Experiment set8IT085 for Herbaspirillum seropedicae SmR1

Compare to:

Vogels_fungal_media 0.2X; growth supplemented with 0.4X LB

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS06655 +2.0 1.9 hypothetical protein compare
HSERO_RS01455 +1.4 2.2 hypothetical protein compare
HSERO_RS17570 +1.4 2.0 4-carboxymuconolactone decarboxylase compare
HSERO_RS13890 +1.3 8.1 LuxR family transcriptional regulator compare
HSERO_RS15240 +1.3 3.0 XRE family transcriptional regulator compare
HSERO_RS00220 +1.2 1.3 hypothetical protein compare
HSERO_RS09435 +1.2 2.4 S-adenosylmethionine-dependent methyltransferase compare
HSERO_RS02275 +1.2 1.6 hypothetical protein compare
HSERO_RS00965 +1.2 1.5 trehalose-phosphatase compare
HSERO_RS10165 +1.2 2.7 flagellar biosynthesis protein compare
HSERO_RS13715 +1.2 1.6 hypothetical protein compare
HSERO_RS08145 +1.2 2.0 damage-inducible protein compare
HSERO_RS18265 +1.1 2.7 ABC transporter permease compare
HSERO_RS13885 +1.1 5.2 histidine kinase compare
HSERO_RS08005 +1.1 3.4 Pb-specific transcription regulator protein compare
HSERO_RS03875 +1.1 1.0 hypothetical protein compare
HSERO_RS18115 +1.0 1.9 hypothetical protein compare
HSERO_RS12735 +1.0 1.7 GNAT family acetyltransferase compare
HSERO_RS14235 +1.0 2.3 ferredoxin compare
HSERO_RS15635 +1.0 2.4 hypothetical protein compare
HSERO_RS14275 +1.0 2.0 nitrogen fixation protein NifX compare
HSERO_RS20630 +1.0 1.2 phenylacetic acid degradation protein compare
HSERO_RS18045 +1.0 0.8 hypothetical protein compare
HSERO_RS06365 +1.0 2.1 hypothetical protein compare
HSERO_RS02610 +1.0 1.9 hypothetical protein compare
HSERO_RS09125 +0.9 3.6 RND transporter compare
HSERO_RS13490 +0.9 2.0 pseudouridine synthase compare
HSERO_RS20265 +0.9 0.9 hypothetical protein compare
HSERO_RS18630 +0.9 1.4 hemerythrin compare
HSERO_RS09235 +0.9 0.8 MarR family transcriptional regulator compare
HSERO_RS14170 +0.9 4.1 thioredoxin compare
HSERO_RS00175 +0.9 1.6 RNA polymerase sigma factor compare
HSERO_RS23205 +0.9 2.4 3-beta hydroxysteroid dehydrogenase compare
HSERO_RS09075 +0.9 2.2 hypothetical protein compare
HSERO_RS19155 +0.9 1.9 LysR family transcriptional regulator compare
HSERO_RS22600 +0.9 1.8 transcriptional regulator compare
HSERO_RS10230 +0.8 2.9 flagellar hook-filament junction protein compare
HSERO_RS19735 +0.8 2.4 acetolactate synthase compare
HSERO_RS03300 +0.8 1.7 molybdenum cofactor biosynthesis protein MoaC compare
HSERO_RS14985 +0.8 4.9 transcriptional regulator compare
HSERO_RS12770 +0.8 1.6 3-oxoacyl-ACP reductase compare
HSERO_RS16045 +0.8 1.5 cytochrome oxidase compare
HSERO_RS10305 +0.8 5.5 flagellar motor switch protein FliG compare
HSERO_RS22955 +0.8 3.1 D-amino acid dehydrogenase compare
HSERO_RS02065 +0.8 3.4 hypothetical protein compare
HSERO_RS10310 +0.8 6.6 flagellar M-ring protein FliF compare
HSERO_RS13900 +0.8 1.5 transporter compare
HSERO_RS11655 +0.8 3.3 hemerythrin compare
HSERO_RS10275 +0.8 5.1 flagellar motor switch protein FliM compare
HSERO_RS16565 +0.8 2.1 hypothetical protein compare
HSERO_RS15065 +0.8 2.1 laccase compare
HSERO_RS18790 +0.8 1.9 xylose isomerase compare
HSERO_RS00365 +0.8 1.5 membrane protein compare
HSERO_RS05500 +0.8 1.5 transaldolase compare
HSERO_RS17220 +0.7 2.3 membrane protein compare
HSERO_RS10250 +0.7 4.1 flagellar biosynthesis protein FliR compare
HSERO_RS01265 +0.7 1.9 acetyl-CoA acetyltransferase compare
HSERO_RS19750 +0.7 2.4 hypothetical protein compare
HSERO_RS11760 +0.7 3.1 hypothetical protein compare
HSERO_RS20815 +0.7 2.5 tRNA methyltransferase compare
HSERO_RS14475 +0.7 1.8 iron ABC transporter ATP-binding protein compare
HSERO_RS02795 +0.7 1.2 alcohol dehydrogenase compare
HSERO_RS10140 +0.7 5.2 flagellar biosynthesis protein FlhB compare
HSERO_RS18835 +0.7 2.0 hypothetical protein compare
HSERO_RS08795 +0.7 1.3 transcriptional regulator compare
HSERO_RS05815 +0.7 1.7 osmotically inducible protein C compare
HSERO_RS04945 +0.7 3.7 murein transglycosylase compare
HSERO_RS14975 +0.7 5.0 flagellar motor protein MotA compare
HSERO_RS14045 +0.7 1.7 aldolase compare
HSERO_RS02450 +0.7 0.9 arsenate reductase compare
HSERO_RS07885 +0.7 2.0 peptide ABC transporter ATP-binding protein compare
HSERO_RS08700 +0.7 1.2 hypothetical protein compare
HSERO_RS04525 +0.7 1.0 lysozyme compare
HSERO_RS23220 +0.7 1.3 hypothetical protein compare
HSERO_RS10555 +0.7 0.9 ribonuclease compare
HSERO_RS10145 +0.7 5.4 flagellar biosynthesis protein FlhA compare
HSERO_RS23185 +0.7 0.4 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS16210 +0.7 2.7 hypothetical protein compare
HSERO_RS02700 +0.7 0.9 hypothetical protein compare
HSERO_RS17080 +0.7 1.7 hypothetical protein compare
HSERO_RS21445 +0.7 1.0 lipid A biosynthesis acyltransferase compare
HSERO_RS07345 +0.7 1.2 hypothetical protein compare
HSERO_RS18010 +0.7 0.6 pseudouridine synthase compare
HSERO_RS18145 +0.7 0.8 membrane protein compare
HSERO_RS17705 +0.7 2.7 chemotaxis protein compare
HSERO_RS11670 +0.7 1.7 ABC transporter substrate-binding protein compare
HSERO_RS05540 +0.7 0.6 cytochrome C' compare
HSERO_RS15055 +0.7 1.0 membrane protein compare
HSERO_RS08975 +0.7 1.6 membrane protein compare
HSERO_RS19885 +0.7 1.6 AsnC family transcriptional regulator compare
HSERO_RS00270 +0.7 1.8 hypothetical protein compare
HSERO_RS05890 +0.7 1.3 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS18070 +0.7 1.6 hypothetical protein compare
HSERO_RS10150 +0.7 5.0 flagellar biosynthesis regulator FlhF compare
HSERO_RS00410 +0.7 0.9 phosphoheptose isomerase compare
HSERO_RS18220 +0.6 3.0 pilus assembly protein compare
HSERO_RS10460 +0.6 0.7 homoserine dehydrogenase compare
HSERO_RS05400 +0.6 2.4 polyamine ABC transporter permease compare
HSERO_RS06660 +0.6 1.4 flavin reductase compare
HSERO_RS10215 +0.6 2.6 flagellar P-ring protein FlgI compare
HSERO_RS10490 +0.6 2.4 gluconate transporter compare
HSERO_RS10260 +0.6 4.8 flagellar biosynthesis protein FliP compare
HSERO_RS10945 +0.6 1.8 ribonuclease HII compare
HSERO_RS18090 +0.6 1.0 II family cellulose-binding protein compare
HSERO_RS20490 +0.6 1.8 XRE family transcriptional regulator compare
HSERO_RS10355 +0.6 2.8 flagellin compare
HSERO_RS13845 +0.6 1.5 hypothetical protein compare
HSERO_RS02000 +0.6 1.1 magnesium transporter compare
HSERO_RS14270 +0.6 0.7 hypothetical protein compare
HSERO_RS09430 +0.6 2.8 peptidase S49 compare
HSERO_RS07800 +0.6 1.6 transcriptional regulator compare
HSERO_RS22525 +0.6 0.8 glyoxalase compare
HSERO_RS01970 +0.6 1.4 esterase compare
HSERO_RS11605 +0.6 2.4 LysR family transcriptional regulator compare
HSERO_RS23210 +0.6 1.1 protein-disulfide isomerase compare
HSERO_RS11660 +0.6 3.6 taurine ABC transporter permease compare
HSERO_RS18210 +0.6 1.2 hypothetical protein compare
HSERO_RS10650 +0.6 1.9 hypothetical protein compare
HSERO_RS15655 +0.6 0.7 methylcitrate synthase compare
HSERO_RS10210 +0.6 1.7 flagellar L-ring protein FlgH compare
HSERO_RS21405 +0.6 1.7 glutathione S-transferase compare
HSERO_RS01985 +0.6 3.3 energy transducer TonB compare
HSERO_RS09210 +0.6 3.8 D-aminopeptidase compare
HSERO_RS03905 +0.6 1.0 RNA polymerase subunit sigma-24 compare
HSERO_RS10280 +0.6 1.2 flagellar basal body protein FliL compare
HSERO_RS14500 +0.6 1.0 murein hydrolase transporter LrgA compare
HSERO_RS05705 +0.6 1.5 endoribonuclease L-PSP compare
HSERO_RS10010 +0.6 1.4 UDP-glucose 6-dehydrogenase compare
HSERO_RS18695 +0.6 2.3 hypothetical protein compare
HSERO_RS10265 +0.6 3.8 flagellar biosynthesis protein FliO compare
HSERO_RS01975 +0.6 1.5 4-hydroxybenzoate synthetase compare
HSERO_RS17240 +0.6 1.7 hypothetical protein compare
HSERO_RS20695 +0.6 3.4 methyltransferase compare
HSERO_RS11680 +0.6 2.1 membrane protein compare
HSERO_RS15050 +0.6 1.8 hypothetical protein compare
HSERO_RS12960 +0.6 1.4 hypothetical protein compare
HSERO_RS15355 +0.6 0.8 hypothetical protein compare
HSERO_RS13125 +0.6 1.1 stress responsive protein compare
HSERO_RS14185 +0.5 0.8 FeS cluster assembly scaffold IscU compare
HSERO_RS08445 +0.5 2.2 chemotaxis protein CheY compare
HSERO_RS10285 +0.5 3.0 flagellar hook-length control protein compare
HSERO_RS10070 +0.5 1.0 hypothetical protein compare
HSERO_RS22420 +0.5 1.4 azoreductase compare
HSERO_RS09260 +0.5 1.5 hypothetical protein compare
HSERO_RS19635 +0.5 2.3 L-asparaginase compare
HSERO_RS00815 +0.5 0.8 sulfurtransferase compare
HSERO_RS08655 +0.5 0.6 acetolactate synthase compare
HSERO_RS18255 +0.5 1.6 branched-chain amino acid ABC transporter substrate-binding protein compare
HSERO_RS03965 +0.5 2.9 hypothetical protein compare
HSERO_RS04335 +0.5 1.4 sodium:proton antiporter compare
HSERO_RS07400 +0.5 1.4 LysR family transcriptional regulator compare
HSERO_RS21265 +0.5 1.1 transcriptional regulator compare
HSERO_RS19055 +0.5 1.7 oxidoreductase compare
HSERO_RS19930 +0.5 2.5 3-carboxy-cis,cis-muconate cycloisomerase compare
HSERO_RS04815 +0.5 2.1 membrane protein compare
HSERO_RS07645 +0.5 1.8 RND transporter MFP subunit compare
HSERO_RS19965 +0.5 2.7 phosphodiesterase compare
HSERO_RS09855 +0.5 0.6 GTP pyrophosphokinase compare
HSERO_RS06565 +0.5 2.2 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
HSERO_RS13440 +0.5 1.0 2-(5''-triphosphoribosyl)-3'-dephospho-CoA synthase compare
HSERO_RS14135 +0.5 1.0 hypothetical protein compare
HSERO_RS13005 +0.5 1.7 histidine kinase compare
HSERO_RS13580 +0.5 1.4 LysR family transcriptional regulator compare
HSERO_RS05095 +0.5 2.0 LacI family transcription regulator compare
HSERO_RS14175 +0.5 1.2 lactoylglutathione lyase compare
HSERO_RS06600 +0.5 0.8 hypothetical protein compare
HSERO_RS21215 +0.5 1.5 hypothetical protein compare
HSERO_RS02030 +0.5 1.3 phospholipid-binding protein compare
HSERO_RS02820 +0.5 2.2 membrane protein compare
HSERO_RS03230 +0.5 2.0 transcriptional regulator compare
HSERO_RS11370 +0.5 1.3 hypothetical protein compare
HSERO_RS07385 +0.5 0.6 hypothetical protein compare
HSERO_RS13545 +0.5 1.2 hypothetical protein compare
HSERO_RS22670 +0.5 2.2 histidine kinase compare
HSERO_RS12880 +0.5 1.2 spore coat protein compare
HSERO_RS15670 +0.5 1.7 major facilitator transporter compare
HSERO_RS20825 +0.5 1.1 ABC transporter permease compare
HSERO_RS03830 +0.5 2.0 hypothetical protein compare
HSERO_RS04230 +0.5 1.3 LuxR family transcriptional regulator compare
HSERO_RS18095 +0.5 1.1 antibiotic biosynthesis monooxygenase compare
HSERO_RS06415 +0.5 2.2 AraC family transcriptional regulator compare
HSERO_RS12385 +0.5 1.3 endonuclease compare
HSERO_RS10020 +0.5 0.7 flippase compare
HSERO_RS08565 +0.5 2.4 RNA helicase compare
HSERO_RS07425 +0.5 1.7 formate dehydrogenase subunit beta compare
HSERO_RS05485 +0.5 1.8 phosphoesterase compare
HSERO_RS00035 +0.5 2.3 4-aminobutyrate aminotransferase compare
HSERO_RS01340 +0.5 2.2 sugar ABC transporter permease compare
HSERO_RS15665 +0.5 0.3 propionate catabolism operon regulatory protein PrpR compare
HSERO_RS01990 +0.5 1.2 shikimate 5-dehydrogenase compare
HSERO_RS13040 +0.5 0.9 hypothetical protein compare
HSERO_RS19110 +0.5 3.3 LysR family transcriptional regulator compare
HSERO_RS14305 +0.5 1.2 chemotaxis protein CheY compare
HSERO_RS14490 +0.5 2.2 LysR family transcriptional regulator compare
HSERO_RS16680 +0.5 1.3 GntR family transcriptional regulator compare
HSERO_RS05245 +0.5 1.4 hypothetical protein compare
HSERO_RS07260 +0.5 0.8 diguanylate cyclase compare
HSERO_RS08045 +0.5 2.1 preprotein translocase subunit TatB compare
HSERO_RS12825 +0.5 1.0 ABC transporter permease compare
HSERO_RS20030 +0.5 1.9 acetyl-CoA acetyltransferase compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in supernatant control experiments

For supernatant control Vogels_fungal_media across organisms