Experiment set8IT083 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 27-day exudates 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS11965 -9.0 -6.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS18950 -8.9 -6.1 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS20350 -8.6 -8.4 amidophosphoribosyltransferase compare
BWI76_RS23220 -8.4 -8.1 amino-acid N-acetyltransferase compare
BWI76_RS23920 -8.2 -5.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS02995 -8.1 -7.9 aspartate carbamoyltransferase compare
BWI76_RS11855 -8.1 -7.9 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS20895 -8.1 -5.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04465 -7.8 -5.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS05840 -7.6 -5.2 glutamate 5-kinase compare
BWI76_RS18920 -7.5 -5.2 ATP phosphoribosyltransferase compare
BWI76_RS18930 -7.5 -4.2 histidinol-phosphate transaminase compare
BWI76_RS00990 -7.3 -8.7 ketol-acid reductoisomerase compare
BWI76_RS04255 -7.1 -9.8 threonine synthase compare
BWI76_RS04670 -7.1 -10.8 3-isopropylmalate dehydratase large subunit compare
BWI76_RS20965 -7.1 -3.1 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04250 -7.0 -8.2 homoserine kinase compare
BWI76_RS21475 -7.0 -8.3 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04675 -6.9 -7.0 3-isopropylmalate dehydrogenase compare
BWI76_RS01655 -6.9 -7.1 homoserine O-succinyltransferase compare
BWI76_RS25115 -6.9 -8.6 argininosuccinate synthase compare
BWI76_RS03010 -6.9 -11.5 ornithine carbamoyltransferase compare
BWI76_RS23360 -6.8 -4.7 diaminopimelate decarboxylase compare
BWI76_RS00855 -6.8 -10.4 argininosuccinate lyase compare
BWI76_RS00785 -6.7 -6.6 cystathionine gamma-synthase compare
BWI76_RS09760 -6.7 -5.3 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS04665 -6.7 -21.6 3-isopropylmalate dehydratase small subunit compare
BWI76_RS07065 -6.7 -7.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS18935 -6.7 -5.9 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS25645 -6.6 -7.9 shikimate dehydrogenase compare
BWI76_RS21265 -6.6 -14.4 phosphoribosylformylglycinamidine synthase compare
BWI76_RS09755 -6.6 -8.9 phosphoserine transaminase compare
BWI76_RS18925 -6.5 -7.7 histidinol dehydrogenase compare
BWI76_RS04160 -6.5 -8.8 phosphoserine phosphatase compare
BWI76_RS01615 -6.5 -10.8 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS10990 -6.4 -3.9 dihydroorotase compare
BWI76_RS27385 -6.4 -7.4 orotate phosphoribosyltransferase compare
BWI76_RS18940 -6.4 -7.6 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS26085 -6.4 -4.4 3-dehydroquinate synthase compare
BWI76_RS22755 -6.3 -8.7 phosphoadenosine phosphosulfate reductase compare
BWI76_RS04470 -6.3 -12.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS11850 -6.3 -7.8 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS04245 -6.2 -15.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS18955 -6.1 -6.9 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS13920 -6.1 -7.5 magnesium-translocating P-type ATPase compare
BWI76_RS26570 -6.0 -4.2 anion permease compare
BWI76_RS04685 -6.0 -10.4 putative leucine operon leader peptide compare
BWI76_RS00985 -6.0 -8.9 transcriptional regulator IlvY compare
BWI76_RS00850 -5.9 -7.3 acetylglutamate kinase compare
BWI76_RS22765 -5.9 -14.2 sulfite reductase subunit alpha compare
BWI76_RS00805 -5.9 -6.6 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS00980 -5.8 -11.6 PLP-dependent threonine dehydratase compare
BWI76_RS00845 -5.7 -7.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01610 -5.6 -5.4 phosphoribosylamine--glycine ligase compare
BWI76_RS20355 -5.6 -3.5 colicin V production protein compare
BWI76_RS00965 -5.5 -2.3 acetolactate synthase 2 small subunit compare
BWI76_RS00835 -5.5 -16.1 phosphoenolpyruvate carboxylase compare
BWI76_RS01200 -5.5 -3.8 diaminopimelate epimerase compare
BWI76_RS09910 -5.4 -16.1 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS00975 -5.4 -6.9 dihydroxy-acid dehydratase compare
BWI76_RS07070 -5.3 -5.6 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS24285 -5.3 -9.9 cystathionine beta-lyase compare
BWI76_RS04680 -5.3 -10.6 2-isopropylmalate synthase compare
BWI76_RS02735 -5.2 -7.1 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS11845 -5.1 -2.1 tryptophan synthase subunit beta compare
BWI76_RS11840 -5.1 -4.5 tryptophan synthase subunit alpha compare
BWI76_RS22760 -5.0 -8.3 sulfite reductase subunit beta compare
BWI76_RS05835 -4.8 -3.9 gamma-glutamyl-phosphate reductase compare
BWI76_RS11860 -4.7 -7.1 anthranilate synthase component I compare
BWI76_RS01800 -4.7 -6.5 glucose-6-phosphate isomerase compare
BWI76_RS23365 -4.7 -8.2 LysR family transcriptional regulator compare
BWI76_RS27390 -4.6 -4.5 ribonuclease PH compare
BWI76_RS04645 -4.6 -4.5 3-dehydroquinase compare
BWI76_RS00400 -4.6 -3.1 glutamine synthetase compare
BWI76_RS15115 -4.6 -3.1 MFS transporter compare
BWI76_RS09645 -4.5 -2.7 thioredoxin-disulfide reductase compare
BWI76_RS04240 -4.3 -3.2 thr operon leader peptide compare
BWI76_RS00180 -4.3 -2.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS22690 -4.2 -5.2 adenylyl-sulfate kinase compare
BWI76_RS21465 -4.1 -3.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS23240 -4.1 -2.8 exonuclease V subunit gamma compare
BWI76_RS20435 -4.0 -2.4 chorismate synthase compare
BWI76_RS05015 -3.9 -3.5 transcriptional regulator compare
BWI76_RS23230 -3.4 -2.4 exodeoxyribonuclease V subunit beta compare
BWI76_RS26055 -3.4 -6.3 siroheme synthase compare
BWI76_RS08385 -3.2 -3.6 citrate (Si)-synthase compare
BWI76_RS09660 -3.1 -2.2 DNA translocase FtsK compare
BWI76_RS20650 -3.0 -2.9 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS06525 -2.9 -6.1 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS23480 -2.8 -11.9 EAL domain-containing protein compare
BWI76_RS04510 -2.8 -2.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS24900 -2.7 -2.5 DeoR family transcriptional regulator compare
BWI76_RS01350 -2.6 -1.9 NAD(P)H-flavin reductase compare
BWI76_RS26000 -2.6 -5.5 aspartate aminotransferase family protein compare
BWI76_RS09530 -2.5 -1.8 hypothetical protein compare
BWI76_RS00960 -2.4 -6.0 acetolactate synthase 2 catalytic subunit compare
BWI76_RS02530 -2.4 -2.2 tRNA dimethylallyltransferase compare
BWI76_RS01275 -2.3 -9.4 LysR family transcriptional regulator compare
BWI76_RS15850 -2.2 -1.8 DUF1317 domain-containing protein compare
BWI76_RS20640 -2.2 -4.2 cysteine synthase A compare
BWI76_RS05200 -2.1 -2.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS20380 -1.9 -1.6 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS00355 -1.9 -2.3 DNA polymerase I compare
BWI76_RS15225 -1.9 -1.8 DeoR family transcriptional regulator compare
BWI76_RS09655 -1.9 -5.1 leucine-responsive regulatory protein compare
BWI76_RS25335 -1.9 -3.4 stringent starvation protein A compare
BWI76_RS01210 -1.8 -2.5 tyrosine recombinase XerC compare
BWI76_RS13915 -1.8 -3.7 magnesium transport protein MgtC compare
BWI76_RS21165 -1.7 -2.1 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS11440 -1.7 -1.6 hypothetical protein compare
BWI76_RS19375 -1.7 -1.3 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS04100 -1.7 -5.3 peptide chain release factor 3 compare
BWI76_RS25870 -1.6 -2.3 elongation factor Tu compare
BWI76_RS23265 -1.6 -1.6 hypothetical protein compare
BWI76_RS21075 -1.6 -1.6 membrane protein compare
BWI76_RS05450 -1.6 -2.2 ribonuclease HI compare
BWI76_RS00140 -1.5 -1.7 phosphate transport system regulator PhoU compare
BWI76_RS16470 -1.5 -1.7 transcriptional repressor NemR compare
BWI76_RS01630 -1.5 -1.7 16S ribosomal RNA compare
BWI76_RS22695 -1.5 -2.9 sulfate adenylyltransferase compare
BWI76_RS13595 -1.5 -3.0 transcriptional regulator compare
BWI76_RS23885 -1.4 -1.5 2-octaprenylphenol hydroxylase compare
BWI76_RS00380 -1.4 -5.6 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS15660 -1.4 -1.2 hypothetical protein compare
BWI76_RS16275 -1.4 -2.6 fumarate hydratase FumA compare
BWI76_RS15110 -1.4 -7.5 putative excinuclease ABC subunit A compare
BWI76_RS09870 -1.4 -5.7 aromatic amino acid aminotransferase compare
BWI76_RS22700 -1.4 -3.4 sulfate adenylyltransferase subunit 2 compare
BWI76_RS21450 -1.4 -2.7 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS19025 -1.4 -6.7 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS24025 -1.3 -7.0 agmatinase compare
BWI76_RS20900 -1.3 -1.6 outer membrane protein assembly factor BamC compare
BWI76_RS15195 -1.3 -2.3 DUF4186 domain-containing protein compare
BWI76_RS17975 -1.3 -3.0 tail-specific protease compare
BWI76_RS14980 -1.3 -1.9 hypothetical protein compare
BWI76_RS23320 -1.3 -1.8 hypothetical protein compare
BWI76_RS00385 -1.3 -6.8 nitrogen assimilation regulatory protein compare
BWI76_RS09650 -1.3 -4.2 hypothetical protein compare
BWI76_RS06530 -1.3 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS06765 -1.3 -1.9 transcriptional regulator compare
BWI76_RS15835 -1.3 -1.0 hypothetical protein compare
BWI76_RS18885 -1.2 -1.6 nitrogen fixation regulatory protein compare
BWI76_RS21480 -1.2 -2.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS22705 -1.2 -5.1 siroheme synthase compare
BWI76_RS05555 -1.2 -2.7 Crl family RNA polymerase assembly factor compare
BWI76_RS09635 -1.2 -1.7 amino acid ABC transporter ATP-binding protein compare
BWI76_RS00970 -1.2 -1.5 branched chain amino acid aminotransferase compare
BWI76_RS25280 -1.2 -2.2 RNase adaptor protein RapZ compare
BWI76_RS06770 -1.1 -5.6 Hha toxicity attenuator compare
BWI76_RS21000 -1.1 -3.5 exopolyphosphatase compare
BWI76_RS25960 -1.1 -4.0 NUDIX hydrolase compare
BWI76_RS10755 -1.1 -1.4 pyrimidine utilization flavin reductase protein F compare
BWI76_RS06395 -1.1 -3.7 tRNA 4-thiouridine(8) synthase ThiI compare
BWI76_RS01185 -1.1 -1.8 adenylate cyclase compare
BWI76_RS09690 -1.1 -1.9 dimethyl sulfoxide reductase compare
BWI76_RS20360 -1.1 -1.2 cell division protein DedD compare
BWI76_RS07475 -1.1 -1.1 DNA-binding transcriptional regulator RamA compare
BWI76_RS21370 -1.1 -2.1 ATP-dependent RNA helicase SrmB compare
BWI76_RS25320 -1.1 -4.6 glutamate synthase compare
BWI76_RS18715 -1.1 -4.5 hypothetical protein compare
BWI76_RS25425 -1.1 -0.9 arginine repressor compare
BWI76_RS10950 -1.1 -1.6 MFS transporter compare
BWI76_RS19870 -1.1 -2.5 malate:quinone oxidoreductase compare
BWI76_RS04530 -1.0 -1.7 peptidylprolyl isomerase SurA compare
BWI76_RS20970 -1.0 -1.4 phosphoribosylglycinamide formyltransferase compare
BWI76_RS00390 -1.0 -2.2 two-component system sensor histidine kinase NtrB compare
BWI76_RS12145 -1.0 -1.6 hypothetical protein compare
BWI76_RS04705 -1.0 -5.0 DNA-binding transcriptional regulator FruR compare
BWI76_RS15060 -1.0 -2.4 MarR family transcriptional regulator compare
BWI76_RS25065 -1.0 -3.2 polyribonucleotide nucleotidyltransferase compare
BWI76_RS00875 -1.0 -4.3 DNA-binding transcriptional regulator FabR compare
BWI76_RS09150 -1.0 -2.9 DNA-binding transcriptional repressor DeoR compare
BWI76_RS15205 -1.0 -2.3 succinate-semialdehyde dehydrogenase compare
BWI76_RS01580 -1.0 -1.5 hypothetical protein compare
BWI76_RS04845 -1.0 -3.7 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS00600 -1.0 -3.9 LacI family transcriptional regulator compare
BWI76_RS11130 -1.0 -5.3 PTS glucose transporter subunit IIBC compare
BWI76_RS20995 -1.0 -3.9 RNA degradosome polyphosphate kinase compare
BWI76_RS19850 -1.0 -1.3 tRNA-Pro compare
BWI76_RS19845 -1.0 -2.6 phosphatase compare
BWI76_RS20440 -0.9 -1.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS03665 -0.9 -1.3 ABC transporter ATP-binding protein compare
BWI76_RS25315 -0.9 -5.5 glutamate synthase large subunit compare
BWI76_RS12155 -0.9 -2.7 hypothetical protein compare
BWI76_RS02985 -0.9 -3.1 reactive intermediate/imine deaminase compare
BWI76_RS08665 -0.9 -3.4 6-phosphogluconolactonase compare
BWI76_RS15840 -0.9 -1.4 prophage protein compare
BWI76_RS18710 -0.9 -6.0 GGDEF-domain containing protein compare
BWI76_RS23305 -0.9 -2.8 NADP(H)-dependent aldo-keto reductase compare
BWI76_RS24105 -0.9 -2.1 resistance protein compare
BWI76_RS21580 -0.9 -1.4 SsrA-binding protein compare
BWI76_RS12470 -0.9 -1.4 thiosulfate sulfurtransferase PspE compare
BWI76_RS25245 -0.9 -2.5 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS15830 -0.9 -1.4 hypothetical protein compare
BWI76_RS16230 -0.9 -1.9 dihydromonapterin reductase compare
BWI76_RS06800 -0.9 -1.1 DUF2496 domain-containing protein compare
BWI76_RS23485 -0.9 -4.8 hypothetical protein compare
BWI76_RS15620 -0.9 -1.4 hypothetical protein compare
BWI76_RS01935 -0.8 -1.3 thiamin phosphate synthase compare
BWI76_RS02410 -0.8 -1.4 EF-P beta-lysylation protein EpmB compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 27-day exudates across organisms