Experiment set8IT082 for Herbaspirillum seropedicae SmR1

Compare to:

Vogels_fungal_media 0.5X; growth supplemented with 0.4X LB

200 most detrimental genes:

  gene name fitness t score description  
HSERO_RS18045 +1.9 2.1 hypothetical protein compare
HSERO_RS17570 +1.4 2.3 4-carboxymuconolactone decarboxylase compare
HSERO_RS06655 +1.3 1.2 hypothetical protein compare
HSERO_RS07385 +1.3 2.0 hypothetical protein compare
HSERO_RS05440 +1.3 1.8 hypothetical protein compare
HSERO_RS12215 +1.1 3.2 alpha/beta hydrolase superfamily protein compare
HSERO_RS15240 +1.0 1.6 XRE family transcriptional regulator compare
HSERO_RS04155 +1.0 1.8 hypothetical protein compare
HSERO_RS19970 +1.0 2.5 branched-chain amino acid ABC transporter compare
HSERO_RS14045 +1.0 3.0 aldolase compare
HSERO_RS02610 +1.0 2.3 hypothetical protein compare
HSERO_RS16050 +0.9 0.9 peptidase S41 compare
HSERO_RS13005 +0.9 2.9 histidine kinase compare
HSERO_RS03905 +0.9 2.8 RNA polymerase subunit sigma-24 compare
HSERO_RS06680 +0.9 3.0 6-hydroxynicotinate 3-monooxygenase compare
HSERO_RS02155 +0.9 2.1 chorismate mutase compare
HSERO_RS14170 +0.9 3.0 thioredoxin compare
HSERO_RS18935 +0.8 3.8 LysR family transcriptional regulator compare
HSERO_RS03415 +0.8 2.0 polyisoprenoid-binding protein compare
HSERO_RS14500 +0.8 1.8 murein hydrolase transporter LrgA compare
HSERO_RS05110 +0.8 2.3 RbsD or FucU transport protein compare
HSERO_RS10945 +0.8 2.0 ribonuclease HII compare
HSERO_RS21655 +0.8 2.7 elongation factor G compare
HSERO_RS22525 +0.8 1.4 glyoxalase compare
HSERO_RS23655 +0.8 1.4 phosphonate ABC transporter permease compare
HSERO_RS18690 +0.8 2.2 short-chain dehydrogenase compare
HSERO_RS03965 +0.8 2.4 hypothetical protein compare
HSERO_RS05890 +0.8 1.8 3-hydroxy-2-methylbutyryl-CoA dehydrogenase compare
HSERO_RS12385 +0.8 1.7 endonuclease compare
HSERO_RS05990 +0.8 2.5 hypothetical protein compare
HSERO_RS10555 +0.8 1.0 ribonuclease compare
HSERO_RS10030 +0.8 1.3 acyltransferase compare
HSERO_RS06420 +0.8 1.2 hypothetical protein compare
HSERO_RS11105 +0.7 1.0 beta-lactamase compare
HSERO_RS09075 +0.7 1.9 hypothetical protein compare
HSERO_RS05540 +0.7 0.6 cytochrome C' compare
HSERO_RS10070 +0.7 0.8 hypothetical protein compare
HSERO_RS02450 +0.7 1.3 arsenate reductase compare
HSERO_RS09375 +0.7 1.9 hypothetical protein compare
HSERO_RS13890 +0.7 4.3 LuxR family transcriptional regulator compare
HSERO_RS14315 +0.7 2.5 hypothetical protein compare
HSERO_RS07675 +0.7 1.9 multidrug DMT transporter compare
HSERO_RS04005 +0.7 2.3 type III secretion protein compare
HSERO_RS14985 +0.7 3.9 transcriptional regulator compare
HSERO_RS09235 +0.7 0.8 MarR family transcriptional regulator compare
HSERO_RS06365 +0.7 0.9 hypothetical protein compare
HSERO_RS00270 +0.7 2.0 hypothetical protein compare
HSERO_RS09055 +0.7 1.5 hypothetical protein compare
HSERO_RS01835 +0.7 0.8 hypothetical protein compare
HSERO_RS07460 +0.7 1.4 hypothetical protein compare
HSERO_RS04475 +0.7 1.3 tail fiber assembly protein compare
HSERO_RS18090 +0.7 0.8 II family cellulose-binding protein compare
HSERO_RS10960 +0.7 1.6 PEP synthetase regulatory protein compare
HSERO_RS04525 +0.7 1.4 lysozyme compare
HSERO_RS10105 +0.7 2.5 transcriptional regulator compare
HSERO_RS10355 +0.7 2.3 flagellin compare
HSERO_RS04405 +0.7 1.6 transcriptional regulator compare
HSERO_RS18630 +0.7 1.1 hemerythrin compare
HSERO_RS13700 +0.7 2.3 Fis family transcriptional regulator compare
HSERO_RS11145 +0.7 2.4 sulfate ABC transporter ATP-binding protein compare
HSERO_RS15635 +0.7 1.6 hypothetical protein compare
HSERO_RS02095 +0.7 0.7 Holliday junction DNA helicase RuvB compare
HSERO_RS19885 +0.7 2.1 AsnC family transcriptional regulator compare
HSERO_RS08745 +0.7 1.6 membrane protein compare
HSERO_RS15355 +0.7 1.8 hypothetical protein compare
HSERO_RS05980 +0.7 1.0 aldehyde dehydrogenase compare
HSERO_RS23365 +0.7 2.1 transporter compare
HSERO_RS23185 +0.6 0.4 succinyl-CoA:3-ketoacid-CoA transferase compare
HSERO_RS12820 +0.6 1.7 ABC transporter permease compare
HSERO_RS01000 +0.6 1.6 hypothetical protein compare
HSERO_RS08970 +0.6 0.8 membrane protein compare
HSERO_RS05815 +0.6 1.9 osmotically inducible protein C compare
HSERO_RS21215 +0.6 1.7 hypothetical protein compare
HSERO_RS07630 +0.6 2.5 histidine kinase compare
HSERO_RS08975 +0.6 1.3 membrane protein compare
HSERO_RS07255 +0.6 1.2 glutaminase compare
HSERO_RS21125 +0.6 2.5 malate:quinone oxidoreductase compare
HSERO_RS00965 +0.6 0.7 trehalose-phosphatase compare
HSERO_RS22955 +0.6 1.9 D-amino acid dehydrogenase compare
HSERO_RS11595 +0.6 1.0 ArsR family transcriptional regulator compare
HSERO_RS02945 +0.6 1.6 LysR family transcriptional regulator compare
HSERO_RS05690 +0.6 1.4 hypothetical protein compare
HSERO_RS12360 +0.6 1.4 hypothetical protein compare
HSERO_RS13880 +0.6 0.7 hypothetical protein compare
HSERO_RS15915 +0.6 1.7 hypothetical protein compare
HSERO_RS18470 +0.6 1.3 acyltransferase compare
HSERO_RS13900 +0.6 1.1 transporter compare
HSERO_RS04045 +0.6 1.8 pilus assembly protein compare
HSERO_RS04455 +0.6 1.8 major tail tube protein compare
HSERO_RS16640 +0.6 1.2 ABC transporter substrate-binding protein compare
HSERO_RS05680 +0.6 1.4 DNA-directed RNA polymerase subunit alpha compare
HSERO_RS10620 +0.6 1.6 membrane protein compare
HSERO_RS18790 +0.6 1.2 xylose isomerase compare
HSERO_RS14350 +0.6 1.8 cysteine desulfurase compare
HSERO_RS03995 +0.6 1.5 hypothetical protein compare
HSERO_RS19985 +0.6 1.6 ABC transporter permease compare
HSERO_RS06570 +0.6 1.0 endoribonuclease L-PSP compare
HSERO_RS05705 +0.6 2.4 endoribonuclease L-PSP compare
HSERO_RS11980 +0.6 1.7 hypothetical protein compare
HSERO_RS10275 +0.6 2.6 flagellar motor switch protein FliM compare
HSERO_RS09130 +0.6 2.3 hemolysin D compare
HSERO_RS19995 +0.6 0.4 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS10010 +0.6 1.6 UDP-glucose 6-dehydrogenase compare
HSERO_RS09745 +0.6 0.9 chemotaxis protein CheY compare
HSERO_RS23455 +0.6 1.1 methylcrotonoyl-CoA carboxylase compare
HSERO_RS07890 +0.6 1.3 hypothetical protein compare
HSERO_RS12015 +0.6 0.8 molecular chaperone DnaK compare
HSERO_RS09360 +0.6 1.1 lysine transporter LysE compare
HSERO_RS07400 +0.6 1.9 LysR family transcriptional regulator compare
HSERO_RS09965 +0.6 1.9 cholera toxin secretion EpsM protein compare
HSERO_RS11990 +0.6 2.6 periplasmic or secreted lipoprotein compare
HSERO_RS22625 +0.6 1.1 LysR family transcriptional regulator compare
HSERO_RS20765 +0.6 0.9 membrane protein compare
HSERO_RS16655 +0.6 2.5 ABC transporter ATP-binding protein compare
HSERO_RS20630 +0.6 0.9 phenylacetic acid degradation protein compare
HSERO_RS20030 +0.6 1.6 acetyl-CoA acetyltransferase compare
HSERO_RS16980 +0.5 2.7 nitrate ABC transporter substrate-binding protein compare
HSERO_RS09205 +0.5 1.3 glutathione ABC transporter permease compare
HSERO_RS07980 +0.5 1.8 hypothetical protein compare
HSERO_RS01500 +0.5 1.8 transketolase compare
HSERO_RS00240 +0.5 2.2 LysR family transcription regulator protein compare
HSERO_RS20250 +0.5 0.4 large conductance mechanosensitive channel protein MscL compare
HSERO_RS05415 +0.5 2.4 spermidine/putrescine ABC transporter ATPase compare
HSERO_RS17080 +0.5 1.4 hypothetical protein compare
HSERO_RS22565 +0.5 1.2 AraC family transcriptional regulator compare
HSERO_RS09800 +0.5 1.5 hypothetical protein compare
HSERO_RS22615 +0.5 1.5 transcriptional regulator compare
HSERO_RS08690 +0.5 2.5 alpha/beta hydrolase compare
HSERO_RS16775 +0.5 1.9 hydratase compare
HSERO_RS22665 +0.5 2.6 transcriptional regulator compare
HSERO_RS02800 +0.5 0.8 hypothetical protein compare
HSERO_RS20585 +0.5 1.1 ABC transporter permease compare
HSERO_RS02700 +0.5 0.7 hypothetical protein compare
HSERO_RS07710 +0.5 1.0 hypothetical protein compare
HSERO_RS20595 +0.5 2.3 branched-chain amino acid ABC transporter substrate-binding protein compare
HSERO_RS19950 +0.5 1.3 Rieske (2Fe-2S) protein compare
HSERO_RS08700 +0.5 0.9 hypothetical protein compare
HSERO_RS06770 +0.5 2.0 branched-chain amino acid ABC transporter substrate-binding protein compare
HSERO_RS02885 +0.5 2.7 esterase compare
HSERO_RS22070 +0.5 1.7 CDP-4-keto-6-deoxy-D-glucose-3-dehydrase compare
HSERO_RS15235 +0.5 1.3 MFS transporter compare
HSERO_RS07730 +0.5 1.6 ferredoxin-NADP reductase compare
HSERO_RS03790 +0.5 1.6 hypothetical protein compare
HSERO_RS19010 +0.5 1.4 ketol-acid reductoisomerase compare
HSERO_RS18070 +0.5 1.4 hypothetical protein compare
HSERO_RS05025 +0.5 1.3 hypothetical protein compare
HSERO_RS03540 +0.5 0.4 dimethyladenosine transferase compare
HSERO_RS11760 +0.5 1.5 hypothetical protein compare
HSERO_RS13885 +0.5 2.5 histidine kinase compare
HSERO_RS11630 +0.5 1.5 methionine ABC transporter ATP-binding protein compare
HSERO_RS15130 +0.5 1.6 MaoC family dehydratase compare
HSERO_RS12700 +0.5 1.0 sphingosine kinase compare
HSERO_RS00365 +0.5 1.3 membrane protein compare
HSERO_RS07260 +0.5 1.7 diguanylate cyclase compare
HSERO_RS13790 +0.5 1.9 glycosyl transferase group 1 protein compare
HSERO_RS19630 +0.5 0.2 AMP nucleosidase compare
HSERO_RS19225 +0.5 1.6 peroxiredoxin compare
HSERO_RS23060 +0.5 1.8 hemolysin D compare
HSERO_RS01460 +0.5 1.1 transcriptional regulator compare
HSERO_RS17485 +0.5 1.0 transcription regulator protein compare
HSERO_RS12770 +0.5 0.9 3-oxoacyl-ACP reductase compare
HSERO_RS11505 +0.5 1.6 D-ribose pyranase compare
HSERO_RS18250 +0.5 1.4 ABC transporter ATP-binding protein compare
HSERO_RS07095 +0.5 2.1 ABC transporter permease compare
HSERO_RS00290 +0.5 2.1 nitrate ABC transporter substrate-binding protein compare
HSERO_RS06360 +0.5 0.9 transcription regulator protein compare
HSERO_RS21405 +0.5 1.0 glutathione S-transferase compare
HSERO_RS10305 +0.5 3.0 flagellar motor switch protein FliG compare
HSERO_RS18210 +0.5 1.0 hypothetical protein compare
HSERO_RS00335 +0.5 1.0 hypothetical protein compare
HSERO_RS02810 +0.5 1.4 methyltransferase compare
HSERO_RS04235 +0.5 2.5 C4-dicarboxylate ABC transporter compare
HSERO_RS08465 +0.5 1.7 hypothetical protein compare
HSERO_RS22695 +0.4 1.1 GntR family transcriptional regulator compare
HSERO_RS05620 +0.4 0.5 dehydratase compare
HSERO_RS19665 +0.4 2.2 glycosyl hydrolase compare
HSERO_RS14200 +0.4 2.4 molecular chaperone HscA compare
HSERO_RS21935 +0.4 0.8 cytochrome C compare
HSERO_RS02205 +0.4 0.8 phosphatase compare
HSERO_RS06940 +0.4 1.0 23S rRNA methyltransferase compare
HSERO_RS02170 +0.4 1.3 transcriptional regulator compare
HSERO_RS03090 +0.4 1.3 deoxyadenosine kinase compare
HSERO_RS16290 +0.4 1.4 Fe(II)-dependent oxygenase compare
HSERO_RS12480 +0.4 0.6 membrane protein compare
HSERO_RS07165 +0.4 1.6 nucleotide-binding protein compare
HSERO_RS03015 +0.4 0.8 hypothetical protein compare
HSERO_RS08455 +0.4 1.8 chemotaxis protein CheW compare
HSERO_RS16850 +0.4 1.4 lipoprotein compare
HSERO_RS17900 +0.4 0.7 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
HSERO_RS10055 +0.4 1.8 glycerate kinase compare
HSERO_RS01090 +0.4 1.7 hypothetical protein compare
HSERO_RS02770 +0.4 0.7 hypothetical protein compare
HSERO_RS18255 +0.4 0.8 branched-chain amino acid ABC transporter substrate-binding protein compare
HSERO_RS06160 +0.4 1.7 hypothetical protein compare
HSERO_RS20125 +0.4 1.0 hypothetical protein compare
HSERO_RS20145 +0.4 1.1 type VI secretion protein compare
HSERO_RS06640 +0.4 1.2 N-carbamoylsarcosine amidase compare
HSERO_RS18115 +0.4 0.7 hypothetical protein compare
HSERO_RS21560 +0.4 1.6 L-asparaginase compare
HSERO_RS01165 +0.4 1.5 dihydroneopterin triphosphate pyrophosphatase compare


Specific Phenotypes

None in this experiment

For Herbaspirillum seropedicae SmR1 in supernatant control experiments

For supernatant control Vogels_fungal_media across organisms