Experiment set8IT081 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_glucose with Brachypodium distachyon 13-day exudates 1x

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -10.2 -6.3 histidinol-phosphate transaminase compare
BWI76_RS20965 -9.9 -6.0 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS11965 -9.1 -6.3 orotidine-5'-phosphate decarboxylase compare
BWI76_RS18950 -9.0 -6.2 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS18935 -8.3 -8.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS20895 -8.2 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS27390 -8.1 -5.6 ribonuclease PH compare
BWI76_RS18940 -8.1 -5.6 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS04685 -8.0 -9.6 putative leucine operon leader peptide compare
BWI76_RS04670 -8.0 -9.5 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04675 -7.6 -8.7 3-isopropylmalate dehydrogenase compare
BWI76_RS18920 -7.6 -5.3 ATP phosphoribosyltransferase compare
BWI76_RS07070 -7.5 -5.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS11855 -7.5 -8.9 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS27385 -7.4 -7.2 orotate phosphoribosyltransferase compare
BWI76_RS00855 -7.3 -8.7 argininosuccinate lyase compare
BWI76_RS04250 -7.3 -8.7 homoserine kinase compare
BWI76_RS04255 -7.2 -9.9 threonine synthase compare
BWI76_RS18955 -7.2 -6.4 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS20350 -7.1 -6.2 amidophosphoribosyltransferase compare
BWI76_RS01615 -7.0 -10.7 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS00805 -6.9 -5.7 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS23360 -6.9 -4.7 diaminopimelate decarboxylase compare
BWI76_RS21265 -6.9 -15.4 phosphoribosylformylglycinamidine synthase compare
BWI76_RS23220 -6.8 -10.2 amino-acid N-acetyltransferase compare
BWI76_RS09755 -6.7 -8.0 phosphoserine transaminase compare
BWI76_RS04245 -6.6 -15.4 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS02995 -6.6 -8.0 aspartate carbamoyltransferase compare
BWI76_RS10990 -6.5 -3.6 dihydroorotase compare
BWI76_RS26085 -6.5 -4.2 3-dehydroquinate synthase compare
BWI76_RS11860 -6.4 -8.8 anthranilate synthase component I compare
BWI76_RS04465 -6.4 -7.2 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04665 -6.4 -19.2 3-isopropylmalate dehydratase small subunit compare
BWI76_RS00990 -6.3 -9.6 ketol-acid reductoisomerase compare
BWI76_RS11850 -6.3 -9.4 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00850 -6.2 -9.9 acetylglutamate kinase compare
BWI76_RS00980 -6.1 -11.8 PLP-dependent threonine dehydratase compare
BWI76_RS23365 -6.1 -4.9 LysR family transcriptional regulator compare
BWI76_RS00835 -6.0 -15.0 phosphoenolpyruvate carboxylase compare
BWI76_RS18925 -6.0 -8.3 histidinol dehydrogenase compare
BWI76_RS22765 -6.0 -15.2 sulfite reductase subunit alpha compare
BWI76_RS11840 -6.0 -2.8 tryptophan synthase subunit alpha compare
BWI76_RS25115 -5.9 -8.0 argininosuccinate synthase compare
BWI76_RS04510 -5.9 -3.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS04470 -5.8 -11.6 carbamoyl phosphate synthase large subunit compare
BWI76_RS01655 -5.8 -10.6 homoserine O-succinyltransferase compare
BWI76_RS04160 -5.8 -7.4 phosphoserine phosphatase compare
BWI76_RS23920 -5.8 -4.0 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS00845 -5.8 -11.5 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS05840 -5.8 -7.6 glutamate 5-kinase compare
BWI76_RS09910 -5.8 -16.3 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS05835 -5.7 -4.6 gamma-glutamyl-phosphate reductase compare
BWI76_RS00965 -5.6 -2.1 acetolactate synthase 2 small subunit compare
BWI76_RS01200 -5.5 -3.8 diaminopimelate epimerase compare
BWI76_RS21475 -5.5 -4.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04645 -5.4 -7.5 3-dehydroquinase compare
BWI76_RS00985 -5.3 -8.9 transcriptional regulator IlvY compare
BWI76_RS05015 -5.3 -4.0 transcriptional regulator compare
BWI76_RS00785 -5.3 -6.5 cystathionine gamma-synthase compare
BWI76_RS11845 -5.2 -2.0 tryptophan synthase subunit beta compare
BWI76_RS04240 -5.2 -2.2 thr operon leader peptide compare
BWI76_RS01610 -5.1 -6.0 phosphoribosylamine--glycine ligase compare
BWI76_RS22755 -5.0 -8.3 phosphoadenosine phosphosulfate reductase compare
BWI76_RS00975 -5.0 -7.8 dihydroxy-acid dehydratase compare
BWI76_RS25645 -4.9 -10.3 shikimate dehydrogenase compare
BWI76_RS24285 -4.9 -8.4 cystathionine beta-lyase compare
BWI76_RS04680 -4.8 -9.9 2-isopropylmalate synthase compare
BWI76_RS03010 -4.7 -6.5 ornithine carbamoyltransferase compare
BWI76_RS07065 -4.6 -2.9 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS20355 -4.5 -3.3 colicin V production protein compare
BWI76_RS00180 -4.4 -2.3 F0F1 ATP synthase subunit epsilon compare
BWI76_RS22760 -4.3 -8.5 sulfite reductase subunit beta compare
BWI76_RS20435 -4.1 -2.1 chorismate synthase compare
BWI76_RS13920 -4.1 -5.4 magnesium-translocating P-type ATPase compare
BWI76_RS01800 -4.0 -4.3 glucose-6-phosphate isomerase compare
BWI76_RS15115 -4.0 -5.4 MFS transporter compare
BWI76_RS08385 -3.9 -3.5 citrate (Si)-synthase compare
BWI76_RS26000 -3.8 -9.1 aspartate aminotransferase family protein compare
BWI76_RS20650 -3.8 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS21465 -3.7 -3.3 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS26570 -3.5 -4.3 anion permease compare
BWI76_RS02735 -3.4 -4.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS09645 -3.3 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS09660 -3.3 -2.2 DNA translocase FtsK compare
BWI76_RS23240 -3.2 -3.8 exonuclease V subunit gamma compare
BWI76_RS09760 -3.2 -1.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS22690 -3.1 -3.5 adenylyl-sulfate kinase compare
BWI76_RS23230 -3.1 -3.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS00400 -3.0 -2.3 glutamine synthetase compare
BWI76_RS19870 -2.9 -2.7 malate:quinone oxidoreductase compare
BWI76_RS00960 -2.9 -6.7 acetolactate synthase 2 catalytic subunit compare
BWI76_RS26055 -2.8 -6.1 siroheme synthase compare
BWI76_RS23480 -2.7 -11.9 EAL domain-containing protein compare
BWI76_RS02530 -2.6 -4.0 tRNA dimethylallyltransferase compare
BWI76_RS05200 -2.5 -2.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS22700 -2.4 -7.5 sulfate adenylyltransferase subunit 2 compare
BWI76_RS17975 -2.4 -5.7 tail-specific protease compare
BWI76_RS01210 -2.3 -1.7 tyrosine recombinase XerC compare
BWI76_RS06525 -2.3 -6.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS14835 -2.2 -1.6 hypothetical protein compare
BWI76_RS01275 -2.2 -6.2 LysR family transcriptional regulator compare
BWI76_RS23265 -2.2 -2.8 hypothetical protein compare
BWI76_RS13915 -2.1 -4.6 magnesium transport protein MgtC compare
BWI76_RS20640 -2.0 -3.5 cysteine synthase A compare
BWI76_RS27430 -2.0 -1.7 (p)ppGpp synthetase compare
BWI76_RS15225 -2.0 -1.6 DeoR family transcriptional regulator compare
BWI76_RS01350 -1.9 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS00390 -1.8 -7.2 two-component system sensor histidine kinase NtrB compare
BWI76_RS00345 -1.8 -4.1 protein disulfide oxidoreductase DsbA compare
BWI76_RS20970 -1.8 -1.8 phosphoribosylglycinamide formyltransferase compare
BWI76_RS15215 -1.7 -1.4 N-acetyltransferase compare
BWI76_RS00355 -1.6 -2.8 DNA polymerase I compare
BWI76_RS06530 -1.6 -2.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS06800 -1.6 -1.6 DUF2496 domain-containing protein compare
BWI76_RS25065 -1.6 -2.8 polyribonucleotide nucleotidyltransferase compare
BWI76_RS25600 -1.6 -1.3 tRNA-Thr compare
BWI76_RS01550 -1.5 -6.8 thiamine phosphate synthase compare
BWI76_RS00600 -1.5 -5.0 LacI family transcriptional regulator compare
BWI76_RS22695 -1.5 -3.1 sulfate adenylyltransferase compare
BWI76_RS01205 -1.4 -2.4 DUF484 family protein compare
BWI76_RS06765 -1.4 -2.7 transcriptional regulator compare
BWI76_RS01540 -1.4 -2.3 thiamine biosynthesis protein ThiS compare
BWI76_RS01530 -1.4 -6.3 2-iminoacetate synthase ThiH compare
BWI76_RS20155 -1.4 -1.8 NADH-quinone oxidoreductase subunit I compare
BWI76_RS15110 -1.4 -7.4 putative excinuclease ABC subunit A compare
BWI76_RS13595 -1.4 -2.6 transcriptional regulator compare
BWI76_RS25315 -1.4 -7.9 glutamate synthase large subunit compare
BWI76_RS00380 -1.3 -6.2 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS09655 -1.3 -3.3 leucine-responsive regulatory protein compare
BWI76_RS20565 -1.3 -2.5 hypothetical protein compare
BWI76_RS19375 -1.3 -2.5 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS25505 -1.3 -7.6 RNase E specificity factor CsrD compare
BWI76_RS21450 -1.3 -2.5 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS20695 -1.3 -4.0 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS19025 -1.3 -7.0 phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) compare
BWI76_RS12090 -1.3 -1.6 HNH endonuclease compare
BWI76_RS21480 -1.3 -3.2 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS00140 -1.3 -1.4 phosphate transport system regulator PhoU compare
BWI76_RS16090 -1.3 -1.3 two-component system response regulator DcuR compare
BWI76_RS25280 -1.3 -2.2 RNase adaptor protein RapZ compare
BWI76_RS06465 -1.3 -2.2 IclR family transcriptional regulator compare
BWI76_RS24025 -1.3 -6.6 agmatinase compare
BWI76_RS22705 -1.2 -5.2 siroheme synthase compare
BWI76_RS00385 -1.2 -6.2 nitrogen assimilation regulatory protein compare
BWI76_RS08525 -1.2 -1.2 colicin transporter compare
BWI76_RS20440 -1.2 -1.0 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS04270 -1.2 -5.2 transaldolase compare
BWI76_RS04955 -1.2 -1.5 hypoxanthine phosphoribosyltransferase compare
BWI76_RS25320 -1.2 -4.1 glutamate synthase compare
BWI76_RS01195 -1.2 -1.3 membrane protein compare
BWI76_RS09315 -1.1 -1.9 hypothetical protein compare
BWI76_RS12790 -1.1 -1.3 lactate dehydrogenase compare
BWI76_RS19840 -1.1 -1.1 hypothetical protein compare
BWI76_RS00970 -1.1 -1.7 branched chain amino acid aminotransferase compare
BWI76_RS01630 -1.1 -1.4 16S ribosomal RNA compare
BWI76_RS25335 -1.1 -3.3 stringent starvation protein A compare
BWI76_RS13435 -1.1 -1.5 hypothetical protein compare
BWI76_RS04100 -1.1 -2.2 peptide chain release factor 3 compare
BWI76_RS16965 -1.1 -1.3 murein lipoprotein compare
BWI76_RS09870 -1.1 -6.2 aromatic amino acid aminotransferase compare
BWI76_RS01330 -1.1 -2.1 twin-arginine translocase subunit TatC compare
BWI76_RS06340 -1.1 -1.1 hypothetical protein compare
BWI76_RS12170 -1.1 -1.8 hypothetical protein compare
BWI76_RS06185 -1.1 -6.0 shikimate kinase II compare
BWI76_RS08665 -1.1 -3.0 6-phosphogluconolactonase compare
BWI76_RS09190 -1.1 -2.6 hypothetical protein compare
BWI76_RS26175 -1.1 -2.5 DeoR/GlpR family transcriptional regulator compare
BWI76_RS15835 -1.1 -1.1 hypothetical protein compare
BWI76_RS09960 -1.1 -2.3 Lon protease compare
BWI76_RS21165 -1.0 -1.5 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS05165 -1.0 -3.4 cobalamin-binding protein compare
BWI76_RS18710 -1.0 -6.5 GGDEF-domain containing protein compare
BWI76_RS27440 -1.0 -3.5 DNA helicase RecG compare
BWI76_RS21690 -1.0 -1.5 hypothetical protein compare
BWI76_RS14650 -1.0 -1.4 helix-turn-helix transcriptional regulator compare
BWI76_RS03665 -1.0 -1.6 ABC transporter ATP-binding protein compare
BWI76_RS15830 -1.0 -1.6 hypothetical protein compare
BWI76_RS24080 -1.0 -1.8 DUF179 domain-containing protein compare
BWI76_RS26620 -1.0 -1.1 Fe-S biogenesis protein NfuA compare
BWI76_RS09730 -1.0 -1.3 pyruvate formate lyase 1-activating protein compare
BWI76_RS04705 -1.0 -4.3 DNA-binding transcriptional regulator FruR compare
BWI76_RS07725 -1.0 -1.1 iron-enterobactin transporter permease compare
BWI76_RS26390 -1.0 -2.3 cell division protein FtsX compare
BWI76_RS13990 -1.0 -3.0 allophanate hydrolase compare
BWI76_RS18715 -1.0 -4.1 hypothetical protein compare
BWI76_RS06495 -1.0 -4.4 cytochrome ubiquinol oxidase subunit II compare
BWI76_RS13980 -1.0 -1.2 hypothetical protein compare
BWI76_RS15035 -0.9 -1.5 metal ABC transporter permease compare
BWI76_RS15825 -0.9 -0.9 hypothetical protein compare
BWI76_RS11130 -0.9 -3.7 PTS glucose transporter subunit IIBC compare
BWI76_RS14410 -0.9 -2.3 hypothetical protein compare
BWI76_RS17300 -0.9 -1.1 tRNA-Tyr compare
BWI76_RS20995 -0.9 -2.2 RNA degradosome polyphosphate kinase compare
BWI76_RS00875 -0.9 -3.7 DNA-binding transcriptional regulator FabR compare
BWI76_RS06395 -0.9 -1.7 tRNA 4-thiouridine(8) synthase ThiI compare
BWI76_RS19805 -0.9 -1.9 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS24850 -0.9 -4.4 DeoR family transcriptional regulator compare
BWI76_RS09440 -0.9 -1.8 hypothetical protein compare
BWI76_RS06770 -0.9 -4.8 Hha toxicity attenuator compare
BWI76_RS21350 -0.9 -1.6 anti-RNA polymerase sigma factor SigE compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in exudates experiments

For exudates Brachypodium distachyon 13-day exudates across organisms