Experiment set8IT078 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS20355 -9.5 -6.6 colicin V production protein compare
BWI76_RS18920 -8.0 -5.5 ATP phosphoribosyltransferase compare
BWI76_RS04465 -8.0 -5.5 carbamoyl-phosphate synthase small subunit compare
BWI76_RS23360 -6.9 -4.8 diaminopimelate decarboxylase compare
BWI76_RS09645 -6.9 -2.8 thioredoxin-disulfide reductase compare
BWI76_RS27385 -6.8 -8.1 orotate phosphoribosyltransferase compare
BWI76_RS04525 -6.8 -4.7 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS04675 -6.7 -6.1 3-isopropylmalate dehydrogenase compare
BWI76_RS07065 -6.7 -7.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS23220 -6.5 -7.8 amino-acid N-acetyltransferase compare
BWI76_RS04645 -6.5 -7.7 3-dehydroquinase compare
BWI76_RS20895 -6.4 -6.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS26085 -6.4 -4.4 3-dehydroquinate synthase compare
BWI76_RS11965 -6.3 -5.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS20350 -6.3 -7.5 amidophosphoribosyltransferase compare
BWI76_RS00805 -6.2 -5.1 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS18955 -6.2 -5.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04685 -6.2 -11.1 putative leucine operon leader peptide compare
BWI76_RS08385 -6.0 -5.9 citrate (Si)-synthase compare
BWI76_RS11855 -6.0 -6.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS13920 -6.0 -10.0 magnesium-translocating P-type ATPase compare
BWI76_RS04670 -6.0 -10.3 3-isopropylmalate dehydratase large subunit compare
BWI76_RS01655 -5.9 -8.8 homoserine O-succinyltransferase compare
BWI76_RS25645 -5.9 -9.1 shikimate dehydrogenase compare
BWI76_RS18940 -5.9 -6.8 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS00990 -5.9 -9.8 ketol-acid reductoisomerase compare
BWI76_RS18950 -5.9 -6.5 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS05835 -5.9 -5.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS04665 -5.8 -19.3 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01615 -5.8 -11.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS18935 -5.7 -8.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS10990 -5.7 -5.5 dihydroorotase compare
BWI76_RS18930 -5.6 -5.7 histidinol-phosphate transaminase compare
BWI76_RS04250 -5.6 -7.5 homoserine kinase compare
BWI76_RS21265 -5.6 -11.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS19845 -5.5 -7.7 phosphatase compare
BWI76_RS09910 -5.5 -17.5 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS07070 -5.5 -6.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS02995 -5.4 -9.0 aspartate carbamoyltransferase compare
BWI76_RS00965 -5.4 -2.2 acetolactate synthase 2 small subunit compare
BWI76_RS09755 -5.4 -10.1 phosphoserine transaminase compare
BWI76_RS00845 -5.3 -11.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS25115 -5.2 -8.2 argininosuccinate synthase compare
BWI76_RS04245 -5.2 -14.2 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS04160 -5.1 -6.8 phosphoserine phosphatase compare
BWI76_RS11845 -5.0 -3.1 tryptophan synthase subunit beta compare
BWI76_RS18925 -5.0 -6.8 histidinol dehydrogenase compare
BWI76_RS00980 -5.0 -11.0 PLP-dependent threonine dehydratase compare
BWI76_RS24285 -5.0 -9.3 cystathionine beta-lyase compare
BWI76_RS21475 -5.0 -5.4 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04680 -5.0 -12.1 2-isopropylmalate synthase compare
BWI76_RS00975 -5.0 -7.4 dihydroxy-acid dehydratase compare
BWI76_RS04255 -5.0 -9.2 threonine synthase compare
BWI76_RS05840 -4.9 -8.3 glutamate 5-kinase compare
BWI76_RS23920 -4.9 -5.7 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS00855 -4.8 -10.6 argininosuccinate lyase compare
BWI76_RS04470 -4.8 -11.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS01610 -4.8 -6.0 phosphoribosylamine--glycine ligase compare
BWI76_RS11850 -4.7 -7.9 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00835 -4.6 -9.7 phosphoenolpyruvate carboxylase compare
BWI76_RS03010 -4.6 -6.9 ornithine carbamoyltransferase compare
BWI76_RS00400 -4.6 -3.1 glutamine synthetase compare
BWI76_RS00850 -4.5 -6.8 acetylglutamate kinase compare
BWI76_RS15115 -4.5 -6.2 MFS transporter compare
BWI76_RS11840 -4.3 -7.8 tryptophan synthase subunit alpha compare
BWI76_RS11860 -4.3 -11.7 anthranilate synthase component I compare
BWI76_RS20965 -4.3 -5.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS23240 -4.2 -2.9 exonuclease V subunit gamma compare
BWI76_RS00180 -4.2 -2.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS20435 -4.2 -2.4 chorismate synthase compare
BWI76_RS23365 -4.2 -9.7 LysR family transcriptional regulator compare
BWI76_RS05015 -4.0 -2.8 transcriptional regulator compare
BWI76_RS20650 -4.0 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS00960 -4.0 -4.9 acetolactate synthase 2 catalytic subunit compare
BWI76_RS26940 -4.0 -10.7 transcriptional regulator compare
BWI76_RS00785 -3.9 -7.0 cystathionine gamma-synthase compare
BWI76_RS09760 -3.8 -4.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS01200 -3.7 -3.6 diaminopimelate epimerase compare
BWI76_RS04240 -3.6 -4.0 thr operon leader peptide compare
BWI76_RS27390 -3.5 -3.1 ribonuclease PH compare
BWI76_RS01210 -3.4 -3.6 tyrosine recombinase XerC compare
BWI76_RS01275 -3.3 -10.9 LysR family transcriptional regulator compare
BWI76_RS26000 -3.2 -6.0 aspartate aminotransferase family protein compare
BWI76_RS23265 -3.1 -4.3 hypothetical protein compare
BWI76_RS23230 -3.1 -3.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS06525 -3.1 -6.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS00985 -3.0 -5.5 transcriptional regulator IlvY compare
BWI76_RS13915 -2.9 -6.2 magnesium transport protein MgtC compare
BWI76_RS09660 -2.7 -2.6 DNA translocase FtsK compare
BWI76_RS17720 -2.7 -1.6 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS17975 -2.7 -6.7 tail-specific protease compare
BWI76_RS21465 -2.7 -1.8 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS06765 -2.5 -3.9 transcriptional regulator compare
BWI76_RS12090 -2.5 -3.8 HNH endonuclease compare
BWI76_RS24850 -2.4 -9.6 DeoR family transcriptional regulator compare
BWI76_RS26570 -2.4 -2.9 anion permease compare
BWI76_RS15225 -2.3 -3.3 DeoR family transcriptional regulator compare
BWI76_RS25320 -2.3 -6.9 glutamate synthase compare
BWI76_RS06530 -2.3 -4.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS22755 -2.2 -5.6 phosphoadenosine phosphosulfate reductase compare
BWI76_RS23480 -2.2 -10.6 EAL domain-containing protein compare
BWI76_RS02735 -2.1 -4.9 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS17980 -2.1 -3.4 RNA chaperone ProQ compare
BWI76_RS05450 -2.1 -2.6 ribonuclease HI compare
BWI76_RS25315 -2.1 -9.9 glutamate synthase large subunit compare
BWI76_RS08580 -2.0 -6.8 quinolinate synthetase compare
BWI76_RS25960 -1.9 -4.0 NUDIX hydrolase compare
BWI76_RS04510 -1.9 -1.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS26460 -1.9 -5.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS19840 -1.9 -1.7 hypothetical protein compare
BWI76_RS22760 -1.8 -5.5 sulfite reductase subunit beta compare
BWI76_RS08525 -1.8 -2.5 colicin transporter compare
BWI76_RS22765 -1.8 -8.8 sulfite reductase subunit alpha compare
BWI76_RS20390 -1.8 -1.2 erythronate-4-phosphate dehydrogenase compare
BWI76_RS15850 -1.7 -1.1 DUF1317 domain-containing protein compare
BWI76_RS15110 -1.7 -9.6 putative excinuclease ABC subunit A compare
BWI76_RS25425 -1.6 -2.1 arginine repressor compare
BWI76_RS09655 -1.6 -4.8 leucine-responsive regulatory protein compare
BWI76_RS25280 -1.6 -2.6 RNase adaptor protein RapZ compare
BWI76_RS01540 -1.5 -2.7 thiamine biosynthesis protein ThiS compare
BWI76_RS02530 -1.5 -2.3 tRNA dimethylallyltransferase compare
BWI76_RS25060 -1.5 -3.9 lipoprotein NlpI compare
BWI76_RS05200 -1.5 -1.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS19375 -1.5 -2.0 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase compare
BWI76_RS22690 -1.5 -2.4 adenylyl-sulfate kinase compare
BWI76_RS21370 -1.4 -2.7 ATP-dependent RNA helicase SrmB compare
BWI76_RS25065 -1.4 -2.6 polyribonucleotide nucleotidyltransferase compare
BWI76_RS20440 -1.4 -1.3 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS04845 -1.4 -6.8 nicotinate-nucleotide pyrophosphorylase compare
BWI76_RS05120 -1.3 -8.0 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS01545 -1.3 -2.7 thiamine biosynthesis protein ThiS compare
BWI76_RS20640 -1.3 -4.3 cysteine synthase A compare
BWI76_RS24925 -1.3 -1.1 DnaA initiator-associating protein DiaA compare
BWI76_RS00380 -1.3 -7.3 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS21140 -1.3 -2.0 molecular chaperone HscA compare
BWI76_RS06675 -1.3 -6.9 nickel/cobalt efflux protein RcnA compare
BWI76_RS01535 -1.3 -3.5 thiazole synthase compare
BWI76_RS21165 -1.3 -2.0 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS15840 -1.3 -1.8 prophage protein compare
BWI76_RS01555 -1.3 -6.4 phosphomethylpyrimidine synthase ThiC compare
BWI76_RS01550 -1.2 -5.2 thiamine phosphate synthase compare
BWI76_RS23915 -1.2 -1.9 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS04705 -1.2 -4.0 DNA-binding transcriptional regulator FruR compare
BWI76_RS00345 -1.2 -3.0 protein disulfide oxidoreductase DsbA compare
BWI76_RS27305 -1.2 -6.9 glycosyl transferase compare
BWI76_RS24075 -1.2 -2.1 glutathione synthase compare
BWI76_RS09190 -1.2 -3.3 hypothetical protein compare
BWI76_RS13595 -1.2 -2.6 transcriptional regulator compare
BWI76_RS21480 -1.1 -3.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS00970 -1.1 -1.5 branched chain amino acid aminotransferase compare
BWI76_RS16965 -1.1 -2.6 murein lipoprotein compare
BWI76_RS16480 -1.1 -3.6 lactoylglutathione lyase compare
BWI76_RS00875 -1.1 -3.8 DNA-binding transcriptional regulator FabR compare
BWI76_RS01870 -1.1 -4.4 diacylglycerol kinase compare
BWI76_RS12470 -1.1 -1.9 thiosulfate sulfurtransferase PspE compare
BWI76_RS04100 -1.1 -3.3 peptide chain release factor 3 compare
BWI76_RS00390 -1.1 -4.1 two-component system sensor histidine kinase NtrB compare
BWI76_RS17290 -1.1 -3.2 formyltetrahydrofolate deformylase compare
BWI76_RS21235 -1.1 -1.5 hypothetical protein compare
BWI76_RS01280 -1.1 -5.9 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS09650 -1.1 -3.7 hypothetical protein compare
BWI76_RS06770 -1.0 -6.5 Hha toxicity attenuator compare
BWI76_RS19380 -1.0 -2.5 hydroxyethylthiazole kinase compare
BWI76_RS08530 -1.0 -2.7 protein TolA compare
BWI76_RS12145 -1.0 -1.8 hypothetical protein compare
BWI76_RS27440 -1.0 -2.2 DNA helicase RecG compare
BWI76_RS01350 -1.0 -1.1 NAD(P)H-flavin reductase compare
BWI76_RS26455 -1.0 -2.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS25335 -1.0 -3.0 stringent starvation protein A compare
BWI76_RS01630 -1.0 -1.3 16S ribosomal RNA compare
BWI76_RS20995 -1.0 -4.6 RNA degradosome polyphosphate kinase compare
BWI76_RS20380 -1.0 -1.2 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS26075 -1.0 -2.9 DNA adenine methylase compare
BWI76_RS21580 -0.9 -0.7 SsrA-binding protein compare
BWI76_RS18715 -0.9 -5.0 hypothetical protein compare
BWI76_RS04530 -0.9 -1.7 peptidylprolyl isomerase SurA compare
BWI76_RS21360 -0.9 -4.5 L-aspartate oxidase compare
BWI76_RS23970 -0.9 -1.7 mechanosensitive ion channel protein MscS compare
BWI76_RS16515 -0.9 -2.2 LysR family transcriptional regulator compare
BWI76_RS27430 -0.9 -1.1 (p)ppGpp synthetase compare
BWI76_RS01900 -0.9 -4.2 tRNA-dihydrouridine synthase A compare
BWI76_RS18270 -0.9 -2.1 hypothetical protein compare
BWI76_RS20910 -0.9 -3.5 glycine cleavage system transcriptional repressor compare
BWI76_RS14650 -0.9 -1.5 helix-turn-helix transcriptional regulator compare
BWI76_RS04270 -0.9 -3.9 transaldolase compare
BWI76_RS27290 -0.9 -5.1 hypothetical protein compare
BWI76_RS11635 -0.9 -1.3 ABC transporter compare
BWI76_RS18710 -0.9 -5.8 GGDEF-domain containing protein compare
BWI76_RS00265 -0.9 -6.4 potassium transporter Kup compare
BWI76_RS15975 -0.9 -1.0 hypothetical protein compare
BWI76_RS26055 -0.9 -4.6 siroheme synthase compare
BWI76_RS01950 -0.9 -6.1 excinuclease ABC subunit A compare
BWI76_RS24900 -0.9 -1.2 DeoR family transcriptional regulator compare
BWI76_RS25505 -0.9 -4.1 RNase E specificity factor CsrD compare
BWI76_RS19775 -0.9 -2.0 phage resistance protein compare
BWI76_RS18855 -0.8 -2.1 cysteine desulfurase NifS compare
BWI76_RS19690 -0.8 -2.3 LysR family transcriptional regulator compare
BWI76_RS08785 -0.8 -4.3 excinuclease ABC subunit B compare
BWI76_RS09970 -0.8 -1.2 porin OmpA compare
BWI76_RS03025 -0.8 -1.7 N-acetyltransferase compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms