Experiment set8IT077 for Pseudomonas fluorescens FW300-N2C3

Compare to:

10% P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride

200 most important genes:

  gene name fitness t score description  
AO356_10000 -3.8 -5.1 hypothetical protein compare
AO356_13175 -3.8 -7.5 spermidine/putrescine ABC transporter permease compare
AO356_19925 -3.8 -11.4 AsnC family transcriptional regulator compare
AO356_21495 -3.7 -15.1 gamma-glutamylputrescine oxidase (EC 1.4.3.-) (from data) conserved
AO356_21405 -3.7 -5.8 3-isopropylmalate dehydratase compare
AO356_21415 -3.6 -11.9 3-isopropylmalate dehydrogenase compare
AO356_13165 -3.6 -13.8 transporter compare
AO356_13170 -3.6 -16.7 spermidine/putrescine ABC transporter permease compare
AO356_17020 -3.5 -7.2 cytochrome D ubiquinol oxidase subunit III compare
AO356_19900 -3.5 -11.7 lysine transporter LysE compare
AO356_09525 -3.5 -6.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
AO356_13135 -3.5 -14.8 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) conserved
AO356_09810 -3.4 -5.1 imidazole glycerol phosphate synthase subunit HisH compare
AO356_13145 -3.4 -11.1 glutamine synthetase compare
AO356_09815 -3.4 -6.7 imidazoleglycerol-phosphate dehydratase compare
AO356_21440 -3.3 -9.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
AO356_21465 -3.3 -4.4 amidophosphoribosyltransferase compare
AO356_13155 -3.2 -14.2 spermidine/putrescine ABC transporter substrate-binding protein compare
AO356_13250 -3.2 -10.1 dihydroxy-acid dehydratase compare
AO356_14440 -3.1 -5.0 indole-3-glycerol-phosphate synthase compare
AO356_00555 -3.1 -10.4 sulfite reductase compare
AO356_08635 -3.1 -9.4 ATP phosphoribosyltransferase regulatory subunit compare
AO356_13410 -3.0 -12.1 homoserine O-acetyltransferase compare
AO356_06970 -3.0 -8.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
AO356_21400 -3.0 -7.1 isopropylmalate isomerase compare
AO356_14420 -3.0 -14.8 anthranilate synthase compare
AO356_19520 -2.9 -5.8 isochorismatase compare
AO356_02265 -2.9 -5.3 glyceraldehyde-3-phosphate dehydrogenase compare
AO356_18325 -2.9 -7.7 argininosuccinate synthase compare
AO356_10300 -2.9 -6.2 3-phosphoglycerate dehydrogenase compare
AO356_16075 -2.9 -3.3 Fis family transcriptional regulator compare
AO356_22200 -2.8 -6.7 sirohydrochlorin ferrochelatase compare
AO356_13150 -2.8 -16.9 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
AO356_10720 -2.8 -12.3 succinate-semialdehyde dehydrogenase compare
AO356_16180 -2.8 -14.2 ketol-acid reductoisomerase compare
AO356_08235 -2.8 -8.5 histidine kinase compare
AO356_12580 -2.7 -13.0 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
AO356_14435 -2.7 -7.2 anthranilate phosphoribosyltransferase compare
AO356_09540 -2.7 -1.8 twin-arginine protein translocation system subunit TatC compare
AO356_09520 -2.7 -6.0 phosphoribosyl-AMP cyclohydrolase compare
AO356_06965 -2.6 -7.8 histidinol dehydrogenase compare
AO356_13160 -2.6 -13.2 putrescine ABC transporter, substrate-binding component (from data) conserved
AO356_13405 -2.6 -10.0 methionine biosynthesis protein MetW compare
AO356_09800 -2.5 -5.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
AO356_06550 -2.5 -11.1 2-isopropylmalate synthase compare
AO356_16175 -2.5 -6.1 acetolactate synthase 3 regulatory subunit compare
AO356_21470 -2.5 -7.7 O-succinylhomoserine sulfhydrylase compare
AO356_08735 -2.4 -12.1 phosphoserine phosphatase compare
AO356_18275 -2.4 -8.7 ornithine carbamoyltransferase compare
AO356_10915 -2.4 -8.6 tryptophan synthase subunit beta compare
AO356_16170 -2.4 -6.9 acetolactate synthase 3 catalytic subunit compare
AO356_12780 -2.3 -7.2 argininosuccinate lyase compare
AO356_12620 -2.3 -12.5 amino acid dehydrogenase compare
AO356_08930 -2.3 -3.8 heptose kinase compare
AO356_21320 -2.3 -2.4 tRNA-Asn compare
AO356_02175 -2.3 -8.7 transaldolase compare
AO356_16070 -2.1 -5.9 poly(A) polymerase compare
AO356_13085 -2.1 -4.3 N-acetylglutamate synthase compare
AO356_10910 -2.1 -6.4 tryptophan synthase subunit alpha compare
AO356_00880 -2.1 -1.8 integration host factor subunit alpha compare
AO356_12520 -2.1 -1.4 orotate phosphoribosyltransferase compare
AO356_11055 -2.1 -2.3 long-chain acyl-CoA thioester hydrolase compare
AO356_14430 -2.0 -7.6 anthranilate synthase compare
AO356_10005 -2.0 -8.7 branched-chain amino acid permease (azaleucine resistance) compare
AO356_15735 -2.0 -10.2 ABC transporter ATP-binding protein compare
AO356_03800 -2.0 -2.2 histidine kinase compare
AO356_24845 -2.0 -2.4 ATPase compare
AO356_19795 -2.0 -2.2 glycerol-3-phosphate dehydrogenase compare
AO356_19425 -2.0 -2.6 lipid A biosynthesis lauroyl acyltransferase compare
AO356_00560 -2.0 -2.4 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
AO356_19085 -1.9 -8.4 phosphoribosylglycinamide formyltransferase compare
AO356_10340 -1.9 -11.1 phosphoserine phosphatase compare
AO356_02205 -1.8 -2.9 NADPH-dependent 7-cyano-7-deazaguanine reductase compare
AO356_30345 -1.7 -4.0 IclR family transcriptional regulator compare
AO356_04560 -1.7 -1.9 serine peptidase compare
AO356_10140 -1.7 -9.6 phosphoenolpyruvate carboxykinase [ATP] compare
AO356_13605 -1.7 -4.5 5,10-methylenetetrahydrofolate reductase compare
AO356_21515 -1.7 -2.0 antitoxin compare
AO356_04575 -1.7 -8.2 RNA polymerase subunit sigma compare
AO356_19090 -1.7 -2.0 phosphoribosylaminoimidazole synthetase compare
AO356_01555 -1.7 -7.2 acyl-CoA dehydrogenase compare
AO356_21275 -1.7 -2.5 peptidase compare
AO356_09795 -1.7 -1.5 imidazole glycerol phosphate synthase subunit HisF compare
AO356_12375 -1.7 -9.5 histidine kinase compare
AO356_03070 -1.6 -9.6 histidine kinase compare
AO356_12615 -1.6 -8.9 AsnC family transcriptional regulator compare
AO356_02580 -1.6 -4.1 GntR family transcriptional regulator compare
AO356_12525 -1.6 -2.7 acetylglutamate kinase compare
AO356_07195 -1.6 -5.4 GntR family transcriptional regulator compare
AO356_06690 -1.6 -1.7 queuine tRNA-ribosyltransferase compare
AO356_13140 -1.5 -6.3 Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94) (from data) compare
AO356_26455 -1.5 -2.9 hypothetical protein compare
AO356_20830 -1.5 -2.8 phosphoadenosine phosphosulfate reductase compare
AO356_13455 -1.5 -3.3 uracil phosphoribosyltransferase compare
AO356_22150 -1.5 -7.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
AO356_06960 -1.5 -6.5 histidinol-phosphate aminotransferase compare
AO356_16665 -1.5 -9.7 sulfate adenylyltransferase compare
AO356_16080 -1.4 -8.6 ATPase compare
AO356_14305 -1.4 -11.5 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_17950 -1.4 -5.3 histidine kinase compare
AO356_12715 -1.4 -2.8 hypothetical protein compare
AO356_06695 -1.4 -4.6 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
AO356_20475 -1.4 -1.3 hypothetical protein compare
AO356_07400 -1.4 -4.3 pseudouridine synthase compare
AO356_14310 -1.3 -9.3 yeaH component of nitrogen-related signalling system yeaH (of yeaGH-ycgB) (from data) compare
AO356_11585 -1.3 -1.9 lipid A biosynthesis lauroyl acyltransferase compare
AO356_22950 -1.3 -1.9 peptidylprolyl isomerase compare
AO356_14315 -1.3 -11.0 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
AO356_02465 -1.3 -1.1 carbonate dehydratase compare
AO356_23155 -1.3 -6.8 RpiR family transcriptional regulator compare
AO356_06005 -1.3 -3.4 zinc metallopeptidase RseP compare
AO356_10010 -1.3 -3.2 GCN5 family acetyltransferase compare
AO356_03435 -1.3 -1.8 integration host factor subunit beta compare
AO356_20155 -1.2 -4.4 phosphate acyltransferase compare
AO356_10880 -1.2 -1.6 hypothetical protein compare
AO356_16670 -1.2 -8.1 adenylylsulfate kinase compare
AO356_07210 -1.2 -1.6 histidine kinase compare
AO356_03725 -1.2 -3.0 histidine kinase compare
AO356_26360 -1.2 -3.2 enoyl-CoA hydratase compare
AO356_03095 -1.2 -4.2 protease HtpX compare
AO356_18245 -1.1 -4.7 DeoR family transcriptional regulator compare
AO356_00605 -1.1 -2.9 TetR family transcriptional regulator compare
AO356_18855 -1.1 -1.8 hypothetical protein compare
AO356_26390 -1.1 -2.9 hypothetical protein compare
AO356_27405 -1.1 -1.9 MarR family transcriptional regulator compare
AO356_06075 -1.1 -5.5 cysteine sulfinate desulfinase compare
AO356_05615 -1.1 -2.8 hypothetical protein compare
AO356_06170 -1.1 -4.1 hypothetical protein compare
AO356_08955 -1.1 -3.4 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
AO356_15450 -1.1 -8.5 AMP nucleosidase compare
AO356_02190 -1.1 -6.2 hypothetical protein compare
AO356_09640 -1.1 -3.5 histidine utilization repressor compare
AO356_08890 -1.1 -5.0 glycosyltransferase compare
AO356_06995 -1.1 -5.6 outer membrane lipid asymmetry maintenance protein MlaD compare
AO356_13475 -1.1 -2.5 glutathione synthetase compare
AO356_01245 -1.0 -4.3 glycogen branching protein compare
AO356_25260 -1.0 -1.3 iron transporter compare
AO356_21790 -1.0 -1.8 sulfonate ABC transporter ATP-binding protein compare
AO356_11610 -1.0 -0.9 glycerol acyltransferase compare
AO356_06990 -1.0 -4.7 toluene tolerance protein compare
AO356_07000 -1.0 -3.0 ABC transporter permease compare
AO356_23250 -1.0 -2.5 hypothetical protein compare
AO356_01195 -1.0 -2.1 polysaccharide biosynthesis protein compare
AO356_09425 -1.0 -4.8 malate dehydrogenase compare
AO356_00995 -1.0 -4.2 carbon storage regulator CsrA compare
AO356_12625 -1.0 -2.2 cytochrome C2 compare
AO356_11420 -1.0 -6.4 histidine kinase compare
AO356_15925 -1.0 -2.4 ribosomal large subunit pseudouridine synthase D compare
AO356_17970 -1.0 -7.4 porin compare
AO356_06085 -1.0 -2.2 thiamine biosynthesis protein ThiF compare
AO356_03130 -0.9 -4.3 hypothetical protein compare
AO356_03180 -0.9 -3.2 CysB family transcriptional regulator compare
AO356_18435 -0.9 -2.2 hypothetical protein compare
AO356_02590 -0.9 -1.4 hypothetical protein compare
AO356_18070 -0.9 -3.0 7-cyano-7-deazaguanine synthase compare
AO356_12710 -0.9 -3.0 hypothetical protein compare
AO356_10345 -0.9 -1.9 RNA pyrophosphohydrolase compare
AO356_22145 -0.9 -4.8 ATP-dependent Clp protease adaptor ClpS compare
AO356_03010 -0.9 -1.8 glutaredoxin compare
AO356_18155 -0.9 -1.6 cold-shock protein compare
AO356_19135 -0.9 -2.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
AO356_26180 -0.9 -3.1 hypothetical protein compare
AO356_28090 -0.9 -1.4 ABC transporter ATP-binding protein compare
AO356_05250 -0.9 -1.8 hypothetical protein compare
AO356_19835 -0.9 -1.5 histidine kinase compare
AO356_13345 -0.9 -1.5 cell division ATP-binding protein FtsE compare
AO356_03805 -0.9 -6.2 chemotaxis protein CheY compare
AO356_03420 -0.9 -4.3 UDP-N-acetyl-D-glucosamine dehydrogenase compare
AO356_18740 -0.9 -2.3 succinylglutamate-semialdehyde dehydrogenase compare
AO356_09995 -0.8 -4.1 LysR family transcriptional regulator compare
AO356_08880 -0.8 -2.7 glycosyl transferase compare
AO356_29160 -0.8 -1.9 (2Fe-2S)-binding protein compare
AO356_25150 -0.8 -2.2 molybdenum cofactor biosynthesis protein B compare
AO356_18780 -0.8 -1.2 carbon storage regulator compare
AO356_17890 -0.8 -1.3 H-NS histone compare
AO356_28695 -0.8 -0.9 IclR family transcriptional regulator compare
AO356_08870 -0.8 -3.7 polymerase compare
AO356_22700 -0.8 -4.8 LOG family protein compare
AO356_07480 -0.8 -1.0 carbamoyl phosphate synthase large subunit compare
AO356_03135 -0.8 -3.9 LysR family transcriptional regulator compare
AO356_28560 -0.8 -2.8 transcriptional regulator compare
AO356_12380 -0.8 -2.8 ATP-dependent DNA helicase RecG compare
AO356_13920 -0.8 -2.3 electron transfer flavoprotein subunit beta compare
AO356_30275 -0.8 -1.3 hypothetical protein compare
AO356_14145 -0.8 -2.4 transporter compare
AO356_01745 -0.8 -0.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
AO356_10715 -0.8 -5.0 4-aminobutyrate aminotransferase compare
AO356_15380 -0.8 -3.7 hypothetical protein conserved
AO356_14155 -0.8 -3.4 dethiobiotin synthetase compare
AO356_00385 -0.8 -1.5 peptidylprolyl isomerase compare
AO356_25395 -0.8 -1.4 fimbrial assembly protein FimA compare
AO356_26485 -0.8 -1.0 hypothetical protein compare
AO356_18725 -0.7 -3.8 acetylornithine aminotransferase compare
AO356_22405 -0.7 -1.3 hypothetical protein compare
AO356_06415 -0.7 -2.3 cytochrome C assembly protein compare
AO356_07005 -0.7 -1.4 ABC transporter ATP-binding protein compare
AO356_12885 -0.7 -3.7 hypothetical protein compare
AO356_27180 -0.7 -1.5 hypothetical protein compare
AO356_02270 -0.7 -5.6 transcription-repair coupling factor compare
AO356_01740 -0.7 -1.0 DNA-binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For resistance P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride in Pseudomonas fluorescens FW300-N2C3

For resistance P. fluorescens FW300-N2C3 spent media from growth in 20 mM putrescine dihydrochloride across organisms