Experiment set8IT076 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.33x; and D-Glucose 74 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS07985 +1.1 2.2 fluoride ion transporter CrcB compare
BWI76_RS16315 +1.0 1.8 SirA-like protein compare
BWI76_RS21340 +0.9 2.3 SoxR reducing system protein RseC compare
BWI76_RS15035 +0.8 0.9 metal ABC transporter permease compare
BWI76_RS12465 +0.8 1.8 phage shock protein D compare
BWI76_RS01585 +0.8 3.5 transcriptional regulator compare
BWI76_RS14415 +0.8 1.5 transcriptional regulator, TetR family protein compare
BWI76_RS19980 +0.7 2.9 2-keto-3-deoxy-L-rhamnonate aldolase compare
BWI76_RS18240 +0.7 1.2 L-arabinose ABC transporter permease AraH compare
BWI76_RS05235 +0.7 1.7 hypothetical protein compare
BWI76_RS12585 +0.7 2.2 transcriptional regulator compare
BWI76_RS01775 +0.7 1.3 hypothetical protein compare
BWI76_RS11170 +0.7 1.6 hypothetical protein compare
BWI76_RS22815 +0.6 5.3 hybrid sensor histidine kinase/response regulator compare
BWI76_RS12885 +0.6 1.5 hypothetical protein compare
BWI76_RS24480 +0.6 4.6 undecaprenyl-diphosphatase compare
BWI76_RS23505 +0.6 5.8 ferrous iron transporter B compare
BWI76_RS27875 +0.6 0.8 membrane protein compare
BWI76_RS23470 +0.6 5.4 hypothetical protein compare
BWI76_RS12125 +0.6 1.2 hypothetical protein compare
BWI76_RS11440 +0.6 1.3 hypothetical protein compare
BWI76_RS27670 +0.6 2.2 LysR family transcriptional regulator compare
BWI76_RS05955 +0.6 1.3 ABC transporter compare
BWI76_RS00440 +0.6 1.5 CopG family transcriptional regulator compare
BWI76_RS01385 +0.6 2.2 potassium transporter compare
BWI76_RS15190 +0.6 3.7 GGDEF domain-containing protein compare
BWI76_RS13380 +0.6 1.5 hypothetical protein compare
BWI76_RS15565 +0.6 1.6 hypothetical protein compare
BWI76_RS13215 +0.6 1.5 type I glyceraldehyde-3-phosphate dehydrogenase compare
BWI76_RS05965 +0.6 2.3 hypothetical protein compare
BWI76_RS11770 +0.6 1.5 hypothetical protein compare
BWI76_RS16950 +0.6 2.2 TetR family transcriptional regulator compare
BWI76_RS20795 +0.6 1.3 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS21810 +0.6 1.5 universal stress protein compare
BWI76_RS16955 +0.6 1.2 hypothetical protein compare
BWI76_RS18605 +0.6 0.8 oxidoreductase molybdopterin-binding protein compare
BWI76_RS10745 +0.6 1.1 hypothetical protein compare
BWI76_RS05645 +0.5 1.6 fructuronate reductase compare
BWI76_RS25245 +0.5 2.3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
BWI76_RS16935 +0.5 1.1 shikimate dehydrogenase compare
BWI76_RS20720 +0.5 1.2 hypothetical protein compare
BWI76_RS27675 +0.5 3.2 EmrB/QacA family drug resistance transporter compare
BWI76_RS10345 +0.5 4.6 MFS transporter compare
BWI76_RS22855 +0.5 2.4 hypothetical protein compare
BWI76_RS20230 +0.5 1.3 hypothetical protein compare
BWI76_RS00025 +0.5 0.8 hypothetical protein compare
BWI76_RS12555 +0.5 2.2 hypothetical protein compare
BWI76_RS04145 +0.5 2.2 purine-nucleoside phosphorylase compare
BWI76_RS06950 +0.5 2.0 ABC transporter ATP-binding protein compare
BWI76_RS23575 +0.5 2.0 hypothetical protein compare
BWI76_RS24035 +0.5 1.8 hypothetical protein compare
BWI76_RS16805 +0.5 1.5 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS16335 +0.5 1.5 division septum protein Blr compare
BWI76_RS17420 +0.5 2.2 hypothetical protein compare
BWI76_RS13445 +0.5 1.6 alpha/beta hydrolase compare
BWI76_RS21485 +0.5 3.9 DUF4154 domain-containing protein compare
BWI76_RS00640 +0.5 1.5 L-rhamnose mutarotase compare
BWI76_RS14725 +0.5 2.0 HxlR family transcriptional regulator compare
BWI76_RS09080 +0.5 1.4 molybdopterin-synthase adenylyltransferase MoeB compare
BWI76_RS05950 +0.5 1.4 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS16795 +0.5 1.6 amino acid ABC transporter ATPase compare
BWI76_RS14805 +0.5 2.3 hypothetical protein compare
BWI76_RS12985 +0.5 1.3 transcriptional regulator compare
BWI76_RS26285 +0.5 1.7 glycerophosphodiester phosphodiesterase compare
BWI76_RS01835 +0.5 2.3 chemotaxis protein CheW compare
BWI76_RS07810 +0.5 2.4 sugar ABC transporter periplasmic sugar-binding protein compare
BWI76_RS00740 +0.5 2.8 ribonuclease E activity regulator RraA compare
BWI76_RS21490 +0.5 3.5 GGDEF domain-containing protein compare
BWI76_RS14665 +0.5 2.1 minor fimbrial subunit YfcQ compare
BWI76_RS13895 +0.5 2.2 LysR family transcriptional regulator compare
BWI76_RS09410 +0.5 2.5 reverse transcriptase compare
BWI76_RS26485 +0.5 3.2 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS06230 +0.5 1.0 DNA-binding response regulator compare
BWI76_RS09455 +0.5 1.7 YbjN domain-containing protein compare
BWI76_RS12155 +0.5 1.9 hypothetical protein compare
BWI76_RS10275 +0.5 1.6 ABC transporter compare
BWI76_RS24955 +0.5 1.7 hypothetical protein compare
BWI76_RS15730 +0.5 1.9 hypothetical protein compare
BWI76_RS09305 +0.5 1.4 hypothetical protein compare
BWI76_RS15620 +0.5 1.3 hypothetical protein compare
BWI76_RS23690 +0.4 1.0 putative glyoxalase/bleomycin resistance protein/dioxygenase compare
BWI76_RS07380 +0.4 0.6 hypothetical protein compare
BWI76_RS25705 +0.4 1.1 hypothetical protein compare
BWI76_RS14435 +0.4 1.1 glutamine ABC transporter ATP-binding protein compare
BWI76_RS10350 +0.4 3.3 EamA family transporter compare
BWI76_RS24070 +0.4 1.6 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS13755 +0.4 1.1 hypothetical protein compare
BWI76_RS15300 +0.4 1.2 multiple antibiotic resistance regulatory periplasmic protein MarB compare
BWI76_RS17500 +0.4 2.5 knotted carbamoyltransferase YgeW compare
BWI76_RS26480 +0.4 3.0 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS03805 +0.4 2.5 porin compare
BWI76_RS22640 +0.4 1.5 hypothetical protein compare
BWI76_RS05655 +0.4 1.8 hypothetical protein compare
BWI76_RS18650 +0.4 1.4 fimbrial protein compare
BWI76_RS27550 +0.4 1.2 hypothetical protein compare
BWI76_RS20380 +0.4 0.8 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS24585 +0.4 1.4 glycerol dehydrogenase compare
BWI76_RS09320 +0.4 1.6 P2 phage tail completion protein R compare
BWI76_RS13315 +0.4 1.4 50S ribosomal protein L7/L12-serine acetyltransferase compare
BWI76_RS05045 +0.4 1.6 general secretion pathway protein GspM compare
BWI76_RS20900 +0.4 1.1 outer membrane protein assembly factor BamC compare
BWI76_RS19710 +0.4 1.3 NupC/NupG family nucleoside CNT transporter compare
BWI76_RS21220 +0.4 1.8 membrane protein compare
BWI76_RS21390 +0.4 2.0 thiol disulfide reductase thioredoxin compare
BWI76_RS16810 +0.4 2.3 RpiR family transcriptional regulator compare
BWI76_RS14750 +0.4 2.3 transcriptional regulator compare
BWI76_RS11150 +0.4 1.1 membrane protein compare
BWI76_RS17165 +0.4 2.1 hypothetical protein compare
BWI76_RS24925 +0.4 1.1 DnaA initiator-associating protein DiaA compare
BWI76_RS14625 +0.4 0.9 protein TolA compare
BWI76_RS16970 +0.4 3.1 murein L,D-transpeptidase compare
BWI76_RS18355 +0.4 1.7 amino acid ABC transporter permease compare
BWI76_RS01905 +0.4 1.9 envelope stress response protein PspG compare
BWI76_RS21560 +0.4 1.1 DNA repair protein RecN compare
BWI76_RS27745 +0.4 1.5 PTS sugar transporter subunit IIB compare
BWI76_RS23195 +0.4 1.6 ethanolamine utilization protein EutP compare
BWI76_RS21690 +0.4 1.1 hypothetical protein compare
BWI76_RS00120 +0.4 1.3 glucosamine-6-phosphate deaminase compare
BWI76_RS20045 +0.4 1.4 hypothetical protein compare
BWI76_RS18335 +0.4 3.0 DNA-binding response regulator compare
BWI76_RS12080 +0.4 2.1 hypothetical protein compare
BWI76_RS20285 +0.4 1.9 glutathione S-transferase compare
BWI76_RS04055 +0.4 3.7 GGDEF domain-containing protein compare
BWI76_RS20060 +0.4 2.6 o-succinylbenzoate synthase compare
BWI76_RS06475 +0.4 0.6 protoheme IX farnesyltransferase compare
BWI76_RS13200 +0.4 2.5 hypothetical protein compare
BWI76_RS10490 +0.4 2.0 vanillate O-demethylase oxygenase subunit compare
BWI76_RS14935 +0.4 0.8 NIPSNAP family containing protein compare
BWI76_RS03080 +0.4 0.9 (Fe-S)-cluster assembly protein compare
BWI76_RS12045 +0.4 1.5 hypothetical protein compare
BWI76_RS27175 +0.4 1.7 hypothetical protein compare
BWI76_RS00655 +0.4 2.1 inner-membrane translocator compare
BWI76_RS05490 +0.4 1.4 Na(+)-translocating NADH-quinone reductase subunit A compare
BWI76_RS10540 +0.4 1.7 allantoinase compare
BWI76_RS07325 +0.4 2.2 aminoimidazole riboside kinase compare
BWI76_RS11490 +0.4 1.7 MltA-interacting protein MipA compare
BWI76_RS20915 +0.4 2.5 peroxiredoxin compare
BWI76_RS17765 +0.4 1.3 hypothetical protein compare
BWI76_RS14505 +0.4 1.5 salicylate synthase Irp9 compare
BWI76_RS26010 +0.4 1.7 cell filamentation protein Fic compare
BWI76_RS05415 +0.4 2.7 LysR family transcriptional regulator compare
BWI76_RS14245 +0.4 1.1 carboxymuconolactone decarboxylase family protein compare
BWI76_RS08445 +0.4 1.7 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS17920 +0.4 1.7 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS25905 +0.4 1.5 hypothetical protein compare
BWI76_RS03845 +0.4 1.7 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase compare
BWI76_RS22435 +0.4 1.5 iron ABC transporter permease AfeC compare
BWI76_RS25015 +0.4 2.3 hypothetical protein compare
BWI76_RS19095 +0.4 3.3 hypothetical protein compare
BWI76_RS17970 +0.4 1.4 zinc metalloprotease HtpX compare
BWI76_RS13775 +0.4 0.9 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS11125 +0.4 0.9 metal-dependent hydrolase compare
BWI76_RS25640 +0.4 1.8 hypothetical protein compare
BWI76_RS25270 +0.4 1.1 ribosome hibernation promoting factor compare
BWI76_RS15925 +0.4 1.6 dimethyl sulfoxide reductase subunit A compare
BWI76_RS26465 +0.4 2.6 4-amino-4-deoxy-L-arabinose lipid A transferase compare
BWI76_RS06130 +0.4 1.1 extensin family protein compare
BWI76_RS16400 +0.4 1.6 pyridoxal kinase compare
BWI76_RS19215 +0.4 1.0 proline-specific peptidase compare
BWI76_RS05425 +0.4 2.0 EEP domain-containing protein compare
BWI76_RS19610 +0.4 2.1 Cytidine deaminase (EC 3.5.4.5) (from data) compare
BWI76_RS19450 +0.4 1.6 hypothetical protein compare
BWI76_RS07465 +0.4 1.6 TetR family transcriptional regulator compare
BWI76_RS21375 +0.4 1.0 autonomous glycyl radical cofactor GrcA compare
BWI76_RS20090 +0.4 2.1 ribonuclease Z compare
BWI76_RS11535 +0.4 1.6 putative oxidoreductase, Zn-dependent and NAD(P)-binding protein compare
BWI76_RS19735 +0.4 1.7 bifunctional PTS fructose transporter subunit IIA/HPr protein compare
BWI76_RS09560 +0.4 1.1 DoxX family membrane protein compare
BWI76_RS02875 +0.4 1.7 membrane protein compare
BWI76_RS19100 +0.4 1.2 putative acid phosphatase compare
BWI76_RS02595 +0.4 2.3 hypothetical protein compare
BWI76_RS17965 +0.4 2.2 MFS transporter compare
BWI76_RS24870 +0.4 2.0 phosphocarrier, HPr family protein compare
BWI76_RS26515 +0.4 1.3 nickel import ATP-binding protein NikD compare
BWI76_RS26330 +0.4 1.1 ABC transporter ATP-binding protein compare
BWI76_RS12040 +0.4 0.8 hypothetical protein compare
BWI76_RS09130 +0.4 1.0 biofilm formation regulatory protein BssR compare
BWI76_RS16070 +0.4 1.8 N-acetylmuramic acid 6-phosphate etherase compare
BWI76_RS20930 +0.4 1.1 arsenate reductase (glutaredoxin) compare
BWI76_RS13055 +0.4 2.3 NmrA family protein compare
BWI76_RS12825 +0.3 1.2 hypothetical protein compare
BWI76_RS19460 +0.3 0.9 lipoprotein compare
BWI76_RS25365 +0.3 3.0 serine endoprotease DegQ compare
BWI76_RS15920 +0.3 0.9 hypothetical protein compare
BWI76_RS19225 +0.3 1.5 AsnC family transcriptional regulator compare
BWI76_RS18070 +0.3 0.5 DNA polymerase III subunit epsilon compare
BWI76_RS07285 +0.3 1.5 LysR family transcriptional regulator compare
BWI76_RS26875 +0.3 1.4 dipeptide ABC transporter permease DppC compare
BWI76_RS14830 +0.3 2.0 hypothetical protein compare
BWI76_RS10640 +0.3 1.3 AraC family transcriptional regulator compare
BWI76_RS05010 +0.3 1.6 tRNA glutamyl-Q synthetase compare
BWI76_RS23535 +0.3 1.1 hypothetical protein compare
BWI76_RS11735 +0.3 1.5 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS14615 +0.3 0.8 hypothetical protein compare
BWI76_RS01065 +0.3 1.7 ATP-dependent RNA helicase RhlB compare
BWI76_RS20215 +0.3 2.4 transcriptional regulator compare
BWI76_RS11820 +0.3 0.7 short-chain dehydrogenase/reductase SDR compare
BWI76_RS13010 +0.3 1.5 LysR family transcriptional regulator compare
BWI76_RS20010 +0.3 1.7 catalase compare
BWI76_RS14970 +0.3 0.9 pyrroline-5-carboxylate reductase compare


Specific Phenotypes

For 3 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms