Experiment set8IT076 for Cupriavidus basilensis FW507-4G11

Compare to:

Carbon source 2-Deoxy-D-Ribose 20 mM

200 most important genes:

  gene name fitness t score description  
RR42_RS16245 -4.4 -6.0 uroporphyrin-III methyltransferase compare
RR42_RS16275 -4.3 -4.2 membrane protein compare
RR42_RS08945 -4.3 -1.5 hypothetical protein compare
RR42_RS02420 -3.5 -1.2 SAM-dependent methyltransferase compare
RR42_RS14365 -3.4 -3.7 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS33815 -3.4 -1.2 isochorismatase compare
RR42_RS34215 -3.3 -1.1 ferredoxin compare
RR42_RS04475 -3.3 -12.5 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS29610 -3.3 -2.3 cytochrome C2 compare
RR42_RS01845 -3.2 -2.6 glycerol-3-phosphate dehydrogenase compare
RR42_RS18300 -3.1 -5.1 anthranilate synthase subunit II compare
RR42_RS19005 -3.1 -8.4 3-dehydroquinate synthase compare
RR42_RS31435 -3.1 -1.5 hypothetical protein compare
RR42_RS06875 -3.1 -3.3 hypothetical protein compare
RR42_RS14320 -3.1 -4.9 O-succinylhomoserine sulfhydrylase compare
RR42_RS21955 -3.0 -1.5 hypothetical protein compare
RR42_RS16255 -3.0 -6.7 sulfate adenylyltransferase compare
RR42_RS17720 -2.9 -2.4 sugar kinase compare
RR42_RS17730 -2.8 -2.9 hypothetical protein compare
RR42_RS29040 -2.8 -2.7 histidyl-tRNA synthetase compare
RR42_RS02705 -2.7 -2.3 Holliday junction DNA helicase RuvA compare
RR42_RS16265 -2.7 -3.6 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS06485 -2.7 -7.5 chorismate synthase compare
RR42_RS16250 -2.6 -7.0 sulfate adenylyltransferase compare
RR42_RS00440 -2.6 -1.8 hypothetical protein compare
RR42_RS16240 -2.6 -1.2 cobalamin biosynthesis protein CbiX compare
RR42_RS03080 -2.6 -3.3 recombinase RecA compare
RR42_RS16280 -2.6 -6.6 transcriptional regulator compare
RR42_RS12250 -2.6 -3.7 sulfate ABC transporter ATP-binding protein compare
RR42_RS05860 -2.6 -4.7 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS07555 -2.6 -1.7 potassium transporter Kup compare
RR42_RS17390 -2.6 -6.4 ATP-dependent DNA helicase RecG compare
RR42_RS18425 -2.6 -1.2 hypothetical protein compare
RR42_RS16360 -2.5 -1.7 transposase compare
RR42_RS05420 -2.5 -8.6 membrane protein compare
RR42_RS14390 -2.5 -3.2 3-isopropylmalate dehydratase compare
RR42_RS15050 -2.5 -8.0 DNA polymerase I compare
RR42_RS17565 -2.4 -13.9 LysR family transcriptional regulator compare
RR42_RS16270 -2.4 -8.8 sulfite reductase compare
RR42_RS13620 -2.3 -1.1 ferredoxin compare
RR42_RS18990 -2.3 -14.5 glutamate synthase compare
RR42_RS33510 -2.3 -7.5 permease compare
RR42_RS01385 -2.2 -3.0 5,10-methylenetetrahydrofolate reductase compare
RR42_RS18305 -2.2 -3.9 anthranilate phosphoribosyltransferase compare
RR42_RS04895 -2.2 -7.2 serine/threonine protein phosphatase compare
RR42_RS17560 -2.2 -6.8 Fur family transcriptional regulator compare
RR42_RS10490 -2.2 -3.3 DNA-binding protein compare
RR42_RS00715 -2.2 -1.4 ferritin compare
RR42_RS04535 -2.1 -3.5 cysteine synthase compare
RR42_RS17055 -2.1 -5.0 LuxR family transcriptional regulator compare
RR42_RS14360 -2.1 -1.7 tryptophan synthase subunit alpha compare
RR42_RS17060 -2.1 -10.3 histidine kinase compare
RR42_RS12040 -2.1 -8.8 MFS transporter compare
RR42_RS17645 -2.1 -5.9 shikimate dehydrogenase compare
RR42_RS01290 -2.0 -6.0 thiamine biosynthesis protein ThiC compare
RR42_RS01160 -2.0 -7.4 homoserine O-acetyltransferase compare
RR42_RS04460 -2.0 -8.7 chorismate mutase compare
RR42_RS01795 -2.0 -10.3 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS07225 -2.0 -1.3 hypothetical protein compare
RR42_RS01775 -2.0 -4.9 glutamate--cysteine ligase compare
RR42_RS18295 -2.0 -9.7 anthranilate synthase component I compare
RR42_RS07325 -2.0 -5.5 exodeoxyribonuclease III compare
RR42_RS12240 -2.0 -1.2 hypothetical protein compare
RR42_RS10365 -1.9 -2.4 ABC transporter compare
RR42_RS26455 -1.9 -1.3 amino acid ABC transporter ATP-binding protein compare
RR42_RS33505 -1.9 -3.9 AsnC family transcriptional regulator compare
RR42_RS01780 -1.9 -5.7 glutathione synthetase compare
RR42_RS16640 -1.8 -1.2 LysR family transcriptional regulator compare
RR42_RS21835 -1.8 -3.3 muconate cycloisomerase compare
RR42_RS01435 -1.8 -1.8 short-chain dehydrogenase compare
RR42_RS07425 -1.8 -4.4 IclR family transcriptional regulator compare
RR42_RS14400 -1.8 -1.8 isopropylmalate isomerase compare
RR42_RS33600 -1.8 -1.5 oxidoreductase compare
RR42_RS34570 -1.8 -1.9 hypothetical protein compare
RR42_RS02550 -1.8 -4.0 ABC transporter permease compare
RR42_RS12545 -1.7 -6.9 aminotransferase compare
RR42_RS12050 -1.7 -5.5 DNA polymerase compare
RR42_RS04470 -1.7 -6.7 prephenate dehydrogenase compare
RR42_RS15525 -1.7 -1.0 hypothetical protein compare
RR42_RS02555 -1.7 -2.8 transcriptional regulator compare
RR42_RS17490 -1.7 -3.5 NADP transhydrogenase subunit alpha compare
RR42_RS27060 -1.7 -1.7 cation transporter compare
RR42_RS02045 -1.6 -6.7 GTPase compare
RR42_RS06850 -1.6 -2.7 hypothetical protein compare
RR42_RS05290 -1.6 -1.8 ankyrin compare
RR42_RS17375 -1.6 -1.2 hypothetical protein compare
RR42_RS26275 -1.6 -2.2 CopG family transcriptional regulator compare
RR42_RS02060 -1.6 -8.1 nucleotide-binding protein compare
RR42_RS05725 -1.6 -4.2 hypothetical protein compare
RR42_RS12175 -1.6 -6.8 malate synthase compare
RR42_RS15640 -1.6 -0.9 hypothetical protein compare
RR42_RS34380 -1.6 -6.4 dihydrolipoamide dehydrogenase compare
RR42_RS00790 -1.5 -7.1 chemotaxis protein CheY compare
RR42_RS02785 -1.5 -2.5 dimethyladenosine transferase compare
RR42_RS22590 -1.5 -1.0 organic hydroperoxide resistance protein compare
RR42_RS32585 -1.5 -1.4 cytochrome C oxidase compare
RR42_RS18520 -1.5 -2.1 hypothetical protein compare
RR42_RS05610 -1.5 -2.2 dehydratase compare
RR42_RS05115 -1.5 -2.5 LysR family transcriptional regulator compare
RR42_RS03720 -1.5 -2.9 heat-shock protein compare
RR42_RS18985 -1.4 -4.6 glutamate synthase compare
RR42_RS22645 -1.4 -3.8 GntR family transcriptional regulator compare
RR42_RS16260 -1.4 -1.8 phosphoadenosine phosphosulfate reductase compare
RR42_RS37400 -1.4 -1.2 6-phosphogluconolactonase compare
RR42_RS04320 -1.4 -2.9 cell division protein FtsK compare
RR42_RS31775 -1.4 -3.2 HxlR family transcriptional regulator compare
RR42_RS16835 -1.4 -2.7 6-phosphogluconate dehydrogenase compare
RR42_RS13800 -1.4 -5.0 formyltetrahydrofolate deformylase compare
RR42_RS01785 -1.4 -3.4 PTS fructose transporter subunit IIA compare
RR42_RS05715 -1.4 -5.8 acyl-CoA dehydrogenase conserved
RR42_RS09470 -1.4 -2.2 2-dehydro-3-deoxygluconokinase compare
RR42_RS02775 -1.4 -1.4 molecular chaperone SurA compare
RR42_RS19440 -1.4 -1.9 DNA repair protein compare
RR42_RS00875 -1.4 -8.6 isocitrate dehydrogenase compare
RR42_RS26350 -1.4 -2.0 bleomycin resistance protein compare
RR42_RS17385 -1.4 -6.4 LysR family transcriptional regulator compare
RR42_RS24490 -1.3 -1.5 hypothetical protein compare
RR42_RS27625 -1.3 -1.7 TetR family transcriptional regulator compare
RR42_RS37320 -1.3 -1.6 hypothetical protein compare
RR42_RS16620 -1.3 -2.1 hypothetical protein compare
RR42_RS20260 -1.3 -2.3 hypothetical protein compare
RR42_RS05755 -1.3 -1.7 enoyl-CoA hydratase compare
RR42_RS14395 -1.3 -1.3 entericidin compare
RR42_RS11795 -1.3 -1.8 PEP synthetase regulatory protein compare
RR42_RS22100 -1.3 -2.6 type VI secretion protein VasK compare
RR42_RS29910 -1.3 -7.6 LacI family transcriptional regulator compare
RR42_RS07200 -1.3 -1.6 hypothetical protein compare
RR42_RS14810 -1.3 -2.5 DEAD/DEAH box helicase compare
RR42_RS16930 -1.3 -3.1 sulfonate ABC transporter ATP-binding protein compare
RR42_RS13830 -1.3 -1.0 hypothetical protein compare
RR42_RS22165 -1.3 -1.9 hypothetical protein compare
RR42_RS31885 -1.3 -1.6 sialidase compare
RR42_RS16195 -1.3 -1.4 haloacid dehalogenase compare
RR42_RS28005 -1.2 -1.5 phosphonate/organophosphate ester transporter subunit compare
RR42_RS29005 -1.2 -3.4 membrane protein compare
RR42_RS28885 -1.2 -3.4 membrane protein compare
RR42_RS07945 -1.2 -3.1 ABC transporter permease compare
RR42_RS14495 -1.2 -5.4 hypothetical protein compare
RR42_RS08645 -1.2 -2.1 phage capsid scaffolding protein compare
RR42_RS07360 -1.2 -2.0 ATPase compare
RR42_RS15890 -1.2 -4.7 heme biosynthesis protein HemY compare
RR42_RS08465 -1.2 -2.2 hypothetical protein compare
RR42_RS17665 -1.2 -0.8 chorismate lyase compare
RR42_RS07110 -1.2 -1.6 hypothetical protein compare
RR42_RS17105 -1.2 -7.3 Clp protease ClpX compare
RR42_RS32445 -1.2 -1.4 shikimate dehydrogenase compare
RR42_RS11280 -1.2 -1.3 phenylacetic acid degradation protein compare
RR42_RS18670 -1.2 -2.7 metal-dependent hydrolase compare
RR42_RS23550 -1.2 -2.8 flagellar export protein FliJ compare
RR42_RS09830 -1.2 -2.0 DNA-binding protein compare
RR42_RS27885 -1.2 -2.8 2-keto-4-pentenoate hydratase compare
RR42_RS36360 -1.2 -1.4 pyridine nucleotide-disulfide oxidoreductase compare
RR42_RS06880 -1.2 -1.6 hypothetical protein compare
RR42_RS25550 -1.1 -1.4 Crp/Fnr family transcriptional regulator compare
RR42_RS08030 -1.1 -1.4 hypothetical protein compare
RR42_RS24605 -1.1 -5.4 TetR family transcriptional regulator compare
RR42_RS24395 -1.1 -1.5 hypothetical protein compare
RR42_RS26840 -1.1 -5.8 DNA-binding protein compare
RR42_RS13270 -1.1 -4.4 recombination protein RecR compare
RR42_RS13435 -1.1 -3.9 polyphosphate kinase compare
RR42_RS03085 -1.1 -0.7 RecX family transcriptional regulator compare
RR42_RS03680 -1.1 -1.6 hypothetical protein compare
RR42_RS19635 -1.1 -1.4 hypothetical protein compare
RR42_RS17320 -1.1 -1.4 murein hydrolase transporter LrgA compare
RR42_RS12555 -1.1 -3.4 alkyl hydroperoxide reductase compare
RR42_RS12515 -1.1 -1.6 camphor resistance protein CrcB compare
RR42_RS00250 -1.1 -2.6 GntR family transcriptional regulator compare
RR42_RS17555 -1.1 -1.2 hypothetical protein compare
RR42_RS07815 -1.1 -2.5 glutamine ABC transporter ATP-binding protein compare
RR42_RS07330 -1.1 -3.8 histidine utilization repressor compare
RR42_RS03765 -1.1 -1.8 formate dehydrogenase compare
RR42_RS25715 -1.1 -3.4 hypothetical protein compare
RR42_RS15565 -1.1 -3.0 3,4-dihydroxy-2-butanone 4-phosphate synthase compare
RR42_RS20880 -1.1 -1.2 hypothetical protein compare
RR42_RS00230 -1.1 -3.1 ADP-ribosylglycohydrolase compare
RR42_RS04700 -1.1 -0.8 ribonuclease G compare
RR42_RS30195 -1.1 -1.9 MarR family transcriptional regulator compare
RR42_RS19465 -1.1 -5.4 AsnC family transcriptional regulator compare
RR42_RS19745 -1.1 -1.5 RlpA-like protein compare
RR42_RS15200 -1.1 -1.9 phenazine biosynthesis protein PhzC/PhzF compare
RR42_RS24790 -1.1 -1.1 LysR family transcriptional regulator compare
RR42_RS23490 -1.1 -4.0 NADH oxidase compare
RR42_RS17050 -1.1 -3.7 phosphoribosylglycinamide formyltransferase compare
RR42_RS23685 -1.1 -5.3 transcriptional regulator compare
RR42_RS03940 -1.0 -1.0 membrane protein compare
RR42_RS02350 -1.0 -2.8 VWA domain-containing protein compare
RR42_RS34520 -1.0 -0.8 transposase compare
RR42_RS02540 -1.0 -1.7 taurine ABC transporter permease compare
RR42_RS26725 -1.0 -1.6 diguanylate cyclase compare
RR42_RS03430 -1.0 -2.8 SAM-dependent methyltransferase compare
RR42_RS12185 -1.0 -1.0 LysR family transcriptional regulator compare
RR42_RS28910 -1.0 -2.5 XRE family transcriptional regulator compare
RR42_RS37375 -1.0 -1.5 short-chain dehydrogenase compare
RR42_RS21980 -1.0 -1.5 transporter compare
RR42_RS05945 -1.0 -1.5 thioredoxin compare
RR42_RS18945 -1.0 -4.0 toluene tolerance protein compare
RR42_RS07090 -1.0 -1.4 hypothetical protein compare
RR42_RS12985 -1.0 -3.0 histidine kinase compare
RR42_RS28720 -1.0 -1.0 hypothetical protein compare
RR42_RS21035 -1.0 -2.3 GntR family transcriptional regulator compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Cupriavidus basilensis FW507-4G11

For carbon source 2-Deoxy-D-Ribose across organisms