Experiment set8IT075 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS09645 -6.9 -2.6 thioredoxin-disulfide reductase compare
BWI76_RS20895 -6.4 -6.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS18950 -6.0 -4.2 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04675 -5.9 -6.8 3-isopropylmalate dehydrogenase compare
BWI76_RS13920 -5.6 -9.6 magnesium-translocating P-type ATPase compare
BWI76_RS04670 -5.5 -12.6 3-isopropylmalate dehydratase large subunit compare
BWI76_RS23360 -5.5 -3.6 diaminopimelate decarboxylase compare
BWI76_RS08385 -5.4 -5.8 citrate (Si)-synthase compare
BWI76_RS00855 -5.2 -9.5 argininosuccinate lyase compare
BWI76_RS25230 -5.1 -8.0 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS20965 -5.0 -5.7 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS11840 -5.0 -6.5 tryptophan synthase subunit alpha compare
BWI76_RS18920 -5.0 -4.8 ATP phosphoribosyltransferase compare
BWI76_RS07070 -5.0 -7.7 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS02815 -4.7 -3.3 fructose-bisphosphatase class I compare
BWI76_RS00990 -4.7 -11.4 ketol-acid reductoisomerase compare
BWI76_RS04470 -4.7 -9.4 carbamoyl phosphate synthase large subunit compare
BWI76_RS26085 -4.6 -2.8 3-dehydroquinate synthase compare
BWI76_RS19845 -4.6 -8.7 phosphatase compare
BWI76_RS00400 -4.5 -3.0 glutamine synthetase compare
BWI76_RS24400 -4.5 -9.6 outer membrane channel protein TolC compare
BWI76_RS01325 -4.5 -3.8 twin-arginine translocase subunit TatB compare
BWI76_RS25115 -4.4 -9.0 argininosuccinate synthase compare
BWI76_RS04665 -4.4 -19.5 3-isopropylmalate dehydratase small subunit compare
BWI76_RS25225 -4.4 -6.4 ABC transporter permease compare
BWI76_RS18925 -4.3 -10.3 histidinol dehydrogenase compare
BWI76_RS18935 -4.2 -5.7 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04160 -4.2 -8.8 phosphoserine phosphatase compare
BWI76_RS04465 -4.2 -5.4 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04250 -4.1 -8.4 homoserine kinase compare
BWI76_RS20355 -4.1 -3.8 colicin V production protein compare
BWI76_RS01615 -4.1 -10.1 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS05840 -4.1 -3.8 glutamate 5-kinase compare
BWI76_RS09755 -4.1 -8.7 phosphoserine transaminase compare
BWI76_RS01330 -4.1 -6.4 twin-arginine translocase subunit TatC compare
BWI76_RS03010 -4.0 -8.3 ornithine carbamoyltransferase compare
BWI76_RS26570 -4.0 -4.2 anion permease compare
BWI76_RS15115 -4.0 -7.1 MFS transporter compare
BWI76_RS01800 -3.9 -5.3 glucose-6-phosphate isomerase compare
BWI76_RS20650 -3.9 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS04255 -3.8 -8.3 threonine synthase compare
BWI76_RS25215 -3.8 -6.0 phospholipid-binding protein MlaC compare
BWI76_RS23365 -3.8 -8.8 LysR family transcriptional regulator compare
BWI76_RS24285 -3.7 -8.3 cystathionine beta-lyase compare
BWI76_RS05835 -3.7 -3.2 gamma-glutamyl-phosphate reductase compare
BWI76_RS25220 -3.7 -4.2 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS04685 -3.7 -9.9 putative leucine operon leader peptide compare
BWI76_RS00805 -3.7 -5.1 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS06525 -3.7 -5.0 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS25645 -3.7 -7.2 shikimate dehydrogenase compare
BWI76_RS00975 -3.7 -9.3 dihydroxy-acid dehydratase compare
BWI76_RS11845 -3.7 -5.3 tryptophan synthase subunit beta compare
BWI76_RS02530 -3.6 -4.0 tRNA dimethylallyltransferase compare
BWI76_RS20350 -3.6 -10.4 amidophosphoribosyltransferase compare
BWI76_RS23920 -3.6 -4.1 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS20475 -3.6 -6.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS00345 -3.6 -5.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS21265 -3.6 -11.6 phosphoribosylformylglycinamidine synthase compare
BWI76_RS23220 -3.6 -8.5 amino-acid N-acetyltransferase compare
BWI76_RS09660 -3.6 -2.4 DNA translocase FtsK compare
BWI76_RS10990 -3.6 -4.3 dihydroorotase compare
BWI76_RS18955 -3.6 -4.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS18940 -3.5 -3.6 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS21475 -3.5 -5.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS07065 -3.5 -5.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00965 -3.4 -1.8 acetolactate synthase 2 small subunit compare
BWI76_RS02995 -3.4 -8.4 aspartate carbamoyltransferase compare
BWI76_RS00850 -3.4 -7.4 acetylglutamate kinase compare
BWI76_RS01610 -3.3 -7.2 phosphoribosylamine--glycine ligase compare
BWI76_RS11850 -3.3 -11.4 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00845 -3.3 -11.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS09635 -3.3 -3.6 amino acid ABC transporter ATP-binding protein compare
BWI76_RS26665 -3.3 -3.7 DNA-binding response regulator compare
BWI76_RS04680 -3.3 -14.4 2-isopropylmalate synthase compare
BWI76_RS11860 -3.2 -8.1 anthranilate synthase component I compare
BWI76_RS04240 -3.1 -4.1 thr operon leader peptide compare
BWI76_RS00980 -3.1 -9.4 PLP-dependent threonine dehydratase compare
BWI76_RS04715 -3.1 -2.3 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS11855 -3.0 -7.2 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS18930 -3.0 -5.2 histidinol-phosphate transaminase compare
BWI76_RS00785 -3.0 -4.5 cystathionine gamma-synthase compare
BWI76_RS00960 -3.0 -4.7 acetolactate synthase 2 catalytic subunit compare
BWI76_RS20435 -2.9 -2.1 chorismate synthase compare
BWI76_RS26940 -2.9 -8.6 transcriptional regulator compare
BWI76_RS00835 -2.9 -10.1 phosphoenolpyruvate carboxylase compare
BWI76_RS01655 -2.9 -9.8 homoserine O-succinyltransferase compare
BWI76_RS26670 -2.9 -8.6 two-component sensor histidine kinase compare
BWI76_RS04645 -2.9 -5.8 3-dehydroquinase compare
BWI76_RS06530 -2.8 -5.4 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS09760 -2.8 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS21465 -2.8 -3.2 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS09910 -2.8 -14.0 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS04245 -2.8 -12.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS23480 -2.7 -12.3 EAL domain-containing protein compare
BWI76_RS26620 -2.7 -1.8 Fe-S biogenesis protein NfuA compare
BWI76_RS15225 -2.7 -2.4 DeoR family transcriptional regulator compare
BWI76_RS11965 -2.7 -5.2 orotidine-5'-phosphate decarboxylase compare
BWI76_RS08495 -2.6 -6.1 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS21070 -2.5 -2.3 outer membrane protein assembly factor BamB compare
BWI76_RS04705 -2.5 -6.9 DNA-binding transcriptional regulator FruR compare
BWI76_RS27385 -2.5 -7.1 orotate phosphoribosyltransferase compare
BWI76_RS01275 -2.5 -5.6 LysR family transcriptional regulator compare
BWI76_RS24850 -2.5 -6.9 DeoR family transcriptional regulator compare
BWI76_RS13915 -2.5 -4.8 magnesium transport protein MgtC compare
BWI76_RS24080 -2.5 -2.4 DUF179 domain-containing protein compare
BWI76_RS04530 -2.4 -3.3 peptidylprolyl isomerase SurA compare
BWI76_RS23230 -2.4 -3.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS08500 -2.3 -3.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS17975 -2.2 -4.1 tail-specific protease compare
BWI76_RS18140 -2.2 -2.8 zinc ABC transporter permease compare
BWI76_RS26000 -2.2 -7.0 aspartate aminotransferase family protein compare
BWI76_RS05015 -2.2 -2.7 transcriptional regulator compare
BWI76_RS19840 -2.2 -1.6 hypothetical protein compare
BWI76_RS23240 -2.2 -3.6 exonuclease V subunit gamma compare
BWI76_RS01350 -2.1 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS02410 -2.1 -2.8 EF-P beta-lysylation protein EpmB compare
BWI76_RS27165 -2.1 -5.9 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS21350 -2.1 -4.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS18130 -2.0 -3.0 zinc ABC transporter substrate-binding protein compare
BWI76_RS00985 -2.0 -7.0 transcriptional regulator IlvY compare
BWI76_RS06765 -2.0 -2.9 transcriptional regulator compare
BWI76_RS22240 -2.0 -8.9 transcriptional regulator compare
BWI76_RS04305 -1.9 -1.5 molecular chaperone DnaJ compare
BWI76_RS06780 -1.9 -7.3 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS00875 -1.9 -6.6 DNA-binding transcriptional regulator FabR compare
BWI76_RS06475 -1.9 -2.0 protoheme IX farnesyltransferase compare
BWI76_RS18135 -1.9 -3.8 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS16535 -1.9 -9.9 MATE family efflux transporter conserved
BWI76_RS01210 -1.9 -1.8 tyrosine recombinase XerC compare
BWI76_RS15850 -1.8 -1.3 DUF1317 domain-containing protein compare
BWI76_RS21000 -1.8 -6.3 exopolyphosphatase compare
BWI76_RS00180 -1.8 -1.9 F0F1 ATP synthase subunit epsilon compare
BWI76_RS01185 -1.8 -2.9 adenylate cyclase compare
BWI76_RS23885 -1.8 -1.8 2-octaprenylphenol hydroxylase compare
BWI76_RS01200 -1.8 -1.4 diaminopimelate epimerase compare
BWI76_RS23265 -1.8 -1.5 hypothetical protein compare
BWI76_RS04510 -1.8 -0.9 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS18165 -1.7 -1.1 NUDIX pyrophosphatase compare
BWI76_RS01630 -1.7 -1.7 16S ribosomal RNA compare
BWI76_RS19905 -1.7 -6.4 OmpK36 porin compare
BWI76_RS06775 -1.7 -11.9 multidrug efflux RND transporter permease subunit compare
BWI76_RS01115 -1.7 -3.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS25070 -1.7 -2.0 hypothetical protein compare
BWI76_RS06770 -1.7 -8.0 Hha toxicity attenuator compare
BWI76_RS15110 -1.7 -8.7 putative excinuclease ABC subunit A compare
BWI76_RS04525 -1.7 -1.5 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS15955 -1.7 -3.4 transcriptional regulator compare
BWI76_RS07730 -1.6 -1.7 iron-enterobactin transporter membrane protein compare
BWI76_RS27390 -1.6 -2.2 ribonuclease PH compare
BWI76_RS20160 -1.6 -2.3 NADH-quinone oxidoreductase subunit H compare
BWI76_RS27310 -1.6 -6.7 glycosyltransferase compare
BWI76_RS20180 -1.6 -7.4 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS21165 -1.6 -2.0 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS25065 -1.5 -2.3 polyribonucleotide nucleotidyltransferase compare
BWI76_RS01135 -1.5 -5.1 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS16980 -1.5 -3.4 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS19805 -1.5 -3.0 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS16975 -1.5 -4.7 cysteine desufuration protein SufE compare
BWI76_RS27290 -1.5 -8.4 hypothetical protein compare
BWI76_RS15830 -1.5 -2.5 hypothetical protein compare
BWI76_RS24025 -1.5 -5.9 agmatinase compare
BWI76_RS07740 -1.5 -2.2 Fe2+-enterobactin ABC transporter substrate-binding protein compare
BWI76_RS05260 -1.5 -1.8 chaperone compare
BWI76_RS16215 -1.5 -6.1 hypothetical protein compare
BWI76_RS01095 -1.4 -2.7 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS12950 -1.4 -3.6 acriflavin resistance protein AcrA compare
BWI76_RS17000 -1.4 -4.8 Fe-S cluster assembly scaffold SufA compare
BWI76_RS17155 -1.3 -1.6 hypothetical protein compare
BWI76_RS20440 -1.3 -2.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS26200 -1.3 -3.8 starch synthase compare
BWI76_RS15840 -1.3 -2.1 prophage protein compare
BWI76_RS00970 -1.3 -2.0 branched chain amino acid aminotransferase compare
BWI76_RS13595 -1.3 -3.0 transcriptional regulator compare
BWI76_RS11435 -1.3 -1.2 hypothetical protein compare
BWI76_RS20135 -1.2 -2.1 NADH-quinone oxidoreductase subunit M compare
BWI76_RS26175 -1.2 -3.7 DeoR/GlpR family transcriptional regulator compare
BWI76_RS16990 -1.2 -3.7 ABC transporter ATP-binding protein compare
BWI76_RS01125 -1.2 -3.5 4-alpha-L-fucosyltransferase compare
BWI76_RS16995 -1.2 -5.4 Fe-S cluster assembly protein SufB compare
BWI76_RS20270 -1.2 -4.7 hypothetical protein compare
BWI76_RS20140 -1.2 -4.8 NADH-quinone oxidoreductase subunit L compare
BWI76_RS23320 -1.2 -1.6 hypothetical protein compare
BWI76_RS24900 -1.2 -1.3 DeoR family transcriptional regulator compare
BWI76_RS05135 -1.2 -2.9 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS21245 -1.2 -1.7 nitrogen regulatory protein P-II compare
BWI76_RS20130 -1.2 -4.6 NADH-quinone oxidoreductase subunit N compare
BWI76_RS09640 -1.2 -3.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS01080 -1.2 -5.7 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS08530 -1.1 -2.4 protein TolA compare
BWI76_RS21370 -1.1 -2.3 ATP-dependent RNA helicase SrmB compare
BWI76_RS24280 -1.1 -4.0 biopolymer transporter ExbB compare
BWI76_RS12090 -1.1 -3.6 HNH endonuclease compare
BWI76_RS25960 -1.1 -3.5 NUDIX hydrolase compare
BWI76_RS22645 -1.1 -4.5 RNA polymerase sigma factor RpoS compare
BWI76_RS12420 -1.1 -1.2 peptide ABC transporter substrate-binding protein SapA compare
BWI76_RS20165 -1.1 -2.8 NADH-quinone oxidoreductase subunit G compare
BWI76_RS22650 -1.1 -4.5 lipoprotein NlpD compare
BWI76_RS24275 -1.1 -3.4 biopolymer transport protein ExbD compare
BWI76_RS21310 -1.1 -1.0 DNA repair protein RecO compare
BWI76_RS27305 -1.1 -6.0 glycosyl transferase compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms