Experiment set8IT074 for Shewanella oneidensis MR-1

Compare to:

Sodium fumarate electron acceptor

200 most detrimental genes:

  gene name fitness t score description  
SO2746 +1.6 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO2986 +1.3 2.2 hypothetical protein (NCBI ptt file) compare
SO1568 +1.1 3.1 hypothetical protein (NCBI ptt file) compare
SO2423 +1.1 1.4 hypothetical protein (NCBI ptt file) compare
SO_3457 +1.0 7.3 hybrid sensory histidine kinase BarA (RefSeq) compare
SO0430 +1.0 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO2656 +1.0 2.4 hypothetical protein (NCBI ptt file) compare
SO3254 flgM +1.0 2.8 negative regulator of flagellin synthesis FlgM (NCBI ptt file) compare
SO0776 +1.0 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO1860 +0.9 3.8 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO2298 +0.9 2.0 hypothetical protein (NCBI ptt file) compare
SO4101 mshP +0.9 5.3 MSHA biogenesis protein MshP (NCBI ptt file) compare
SO3936 motX +0.9 6.3 sodium-type flagellar protein MotX (NCBI ptt file) compare
SO3210 fliA +0.8 5.3 RNA polymerase sigma-27 factor (NCBI ptt file) compare
SO2987 +0.8 3.5 hypothetical protein (NCBI ptt file) compare
SO2753.2 +0.8 3.1 hypothetical sodium-type flagellar protein MotY (NCBI ptt file) compare
SO2238 ptsH +0.8 1.5 phosphocarrier protein HPr (NCBI ptt file) compare
SO0309 +0.8 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3225 fliI +0.8 5.1 flagellum-specific ATP synthase FliI (NCBI ptt file) compare
SO1530 pomB +0.8 4.0 sodium-driven polar flagellar protein PomB (NCBI ptt file) compare
SO1152 +0.8 1.1 hypothetical protein (NCBI ptt file) compare
SO3849 +0.8 2.8 conserved domain protein (NCBI ptt file) compare
SO3226 fliH +0.8 4.7 flagellar assembly protein FliH (NCBI ptt file) compare
SO2467.1 +0.8 2.0 hypothetical UV repair DNA polymerase (NCBI ptt file) compare
SO1298.4 +0.8 2.0 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO3229 fliE +0.8 1.6 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SO3261 +0.8 4.9 polysaccharide biosynthesis related-protein (NCBI ptt file) compare
SO2297 +0.7 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO1570 +0.7 5.0 GGDEF domain protein (NCBI ptt file) compare
SO4337 +0.7 3.4 transcriptional regulator, AsnC family (NCBI ptt file) compare
SO3029 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
SO2306 +0.7 1.5 cell division protein FtsK, putative (NCBI ptt file) compare
SO3268 +0.7 5.9 alpha amylase domain protein (NCBI ptt file) compare
SO3217 fliQ +0.7 3.3 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO3263 +0.7 4.3 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file) compare
SO1062 def-2 +0.7 1.2 polypeptide deformylase (NCBI ptt file) compare
SO3220 fliN +0.7 3.9 flagellar motor switch protein FliN (NCBI ptt file) compare
SO3215 flhB +0.7 3.7 flagellar biosynthetic protein FlhB (NCBI ptt file) compare
SO0611 sspA +0.7 1.4 stringent starvation protein a (NCBI ptt file) compare
SO3262 ilvB +0.7 5.8 acetolactate synthase isozyme I, large subunit (NCBI ptt file) compare
SO3393 +0.7 1.8 transcriptional regulator, TetR family (NCBI ptt file) compare
SO3244 flgG +0.7 4.0 flagellar basal-body rod protein FlgG (NCBI ptt file) compare
SO3218 fliP +0.7 3.5 flagellar biosynthetic protein FliP (NCBI ptt file) compare
SO1320 +0.7 2.6 hypothetical protein (NCBI ptt file) compare
SO2245 dnaQ-1 +0.7 1.1 DNA polymerase III, epsilon subunit (NCBI ptt file) compare
SO2830 +0.7 2.7 hypothetical protein (NCBI ptt file) compare
SO1372 +0.7 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO4114 mshJ +0.7 3.9 MSHA biogenesis protein MshJ (NCBI ptt file) compare
SO0051 +0.7 1.2 hypothetical protein (NCBI ptt file) compare
SO2181 +0.7 1.3 hypothetical protein (NCBI ptt file) compare
SO3273 +0.7 6.1 conserved hypothetical protein (NCBI ptt file) compare
SO3953 +0.7 1.5 conserved hypothetical protein TIGR00056 (NCBI ptt file) compare
SO1817 +0.7 1.1 primosomal replication protein n'', putative (NCBI ptt file) compare
SO_1299 +0.7 2.8 no description compare
SO3258 +0.6 4.8 conserved hypothetical protein (NCBI ptt file) compare
SO1169 +0.6 2.7 conserved hypothetical protein TIGR00246 (NCBI ptt file) compare
SO3239.2 +0.6 3.4 hypothetical flagellar protein (NCBI ptt file) compare
SOA0130 +0.6 1.2 ISSod4, transposase (NCBI ptt file) compare
SO3269 +0.6 4.8 cytidylyltransferase domain protein (NCBI ptt file) compare
SO3265 +0.6 4.4 conserved hypothetical protein (NCBI ptt file) compare
SO3219 fliO +0.6 1.3 flagellar protein FliO (NCBI ptt file) compare
SO3270 +0.6 2.4 polysaccharide biosynthesis protein (NCBI ptt file) compare
SOA0121 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
SO3242 flgI +0.6 4.1 flagellar P-ring protein FlgI (NCBI ptt file) compare
SO2601 +0.6 4.0 carboxyl-terminal protease (NCBI ptt file) compare
SO0306 +0.6 3.9 hypothetical protein (NCBI ptt file) compare
SO4007 +0.6 1.9 predicted chromosome partitioning protein (with smc-like SO4008) (from data) compare
SO3249 flgC +0.6 3.0 flagellar basal-body rod protein FlgC (NCBI ptt file) compare
SO1350 recO +0.6 1.9 DNA repair protein RecO (NCBI ptt file) compare
SO_0419 +0.6 1.2 no description compare
SO_3240 +0.6 1.5 no description compare
SO3209 cheY-3 +0.6 2.4 chemotaxis protein CheY (NCBI ptt file) compare
SO2159 +0.6 1.8 TonB domain protein (NCBI ptt file) compare
SO1669 tyrR +0.6 3.2 transcriptional regulatory protein TyrR (NCBI ptt file) compare
SO3247 flgE +0.6 4.5 flagellar hook protein FlgE (NCBI ptt file) compare
SO3223 fliK +0.6 3.7 flagellar hook-length control protein FliK (NCBI ptt file) compare
SO3216 fliR +0.6 3.0 flagellar biosynthetic protein FliR (NCBI ptt file) compare
SO2829 +0.6 1.5 conserved domain protein (NCBI ptt file) compare
SO0347 +0.6 3.2 acyltransferase family protein (NCBI ptt file) compare
SO4006 +0.6 2.7 predicted chromosome partitioning protein (with smc-like SO4008) (from data) compare
SO_4115 +0.6 3.6 no description compare
SO0543 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
SO3003 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
SO3357 +0.6 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO3232 flrA +0.6 3.4 flagellar regulatory protein A (NCBI ptt file) compare
SO2237 ptsI +0.6 1.5 phosphoenolpyruvate-protein phosphotransferase (NCBI ptt file) compare
SO4687 ugd +0.6 4.3 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
SO2840 +0.5 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO2557 +0.5 2.8 conserved hypothetical protein (NCBI ptt file) compare
SO_3118 +0.5 1.2 no description compare
SO0560 fhs +0.5 4.6 formate--tetrahydrofolate ligase (NCBI ptt file) compare
SO3253 +0.5 4.4 flagellar basal-body P-ring formation protein FlgA, putative (NCBI ptt file) compare
SO1298 gspB +0.5 3.0 general secretion pathway protein B (NCBI ptt file) compare
SO2417 +0.5 1.8 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO4100 mshQ +0.5 4.6 MSHA biogenesis protein MshQ (NCBI ptt file) compare
SO_1210 +0.5 2.1 lipoprotein NlpI (RefSeq) compare
SO4109 mshE +0.5 3.5 MSHA biogenesis protein MshE (NCBI ptt file) compare
SO2947 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
SO3271 +0.5 2.8 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO1105 nqrC-2 +0.5 0.9 NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file) compare
SO4057 metJ +0.5 0.9 met repressor (NCBI ptt file) compare
SO_2812 +0.5 1.6 no description compare
SO2208 +0.5 1.3 phosphotyrosine protein phosphatase (NCBI ptt file) compare
SO3779 cydC +0.5 1.9 ABC transporter, ATP-binding protein CydC (NCBI ptt file) compare
SO4672 glpE +0.5 2.0 glpE protein (NCBI ptt file) compare
SO1587 +0.5 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3245 flgF +0.5 3.2 flagellar basal-body rod protein FlgF (NCBI ptt file) compare
SO1556 +0.5 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO2441 thiG +0.5 2.5 thiG protein (NCBI ptt file) compare
SO3012 +0.5 2.5 hypothetical protein (NCBI ptt file) compare
SO1697 +0.5 2.4 hypothetical protein (NCBI ptt file) compare
SO_2786 +0.5 2.0 no description compare
SO0544.1 +0.5 2.4 hypothetical cheY-homologous receiver domain protein (NCBI ptt file) compare
SO3684 +0.5 1.2 transcriptional regulator, TetR family (NCBI ptt file) compare
SO3208 cheZ +0.5 0.6 chemotaxis protein CheZ (NCBI ptt file) compare
SO3243 flgH +0.5 2.4 flagellar L-ring protein FlgH (NCBI ptt file) compare
SO1068 +0.5 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO4112 mshL +0.5 2.9 MSHA biogenesis protein MshL (NCBI ptt file) compare
SO1975 +0.5 1.7 Zinc carboxypeptidase-related protein (NCBI ptt file) compare
SO3224 fliJ +0.5 1.7 flagellar protein FliJ (NCBI ptt file) compare
SO2849 +0.5 2.0 acetyltransferase, GNAT family (NCBI ptt file) compare
SO2983 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
SO0559 +0.5 2.6 MaoC domain protein (NCBI ptt file) compare
SO2487 edd +0.5 0.9 6-phosphogluconate dehydratase (NCBI ptt file) compare
SO3227 fliG +0.5 2.7 flagellar motor switch protein FliG (NCBI ptt file) compare
SO2577 minD +0.5 2.0 septum site-determining protein MinD (NCBI ptt file) compare
SO0924 +0.5 2.4 hypothetical protein (NCBI ptt file) compare
SO3213 flhA +0.5 3.6 flagellar biosynthesis protein FlhA (NCBI ptt file) compare
SO0198 +0.5 3.4 transcriptional regulator, TetR family (NCBI ptt file) compare
SO3239.3 +0.5 3.2 hypothetical flagellar hook-associated protein (NCBI ptt file) compare
SO4108 mshG +0.5 3.4 MSHA biogenesis protein MshG (NCBI ptt file) compare
SO1835 +0.5 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO4002 +0.5 4.2 sensory transduction histidine kinase (NCBI ptt file) compare
SO2254 +0.5 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO3000 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO3277 +0.5 2.0 transcriptional regulator, TetR family (NCBI ptt file) compare
SO4102 mshO +0.5 3.6 MSHA biogenesis protein MshO (NCBI ptt file) compare
SO4035 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
SO0844 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
SO4489 +0.5 1.7 acetyltransferase, GNAT family (NCBI ptt file) compare
SO1652 +0.5 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO1609 syd +0.5 1.8 syd protein (NCBI ptt file) compare
SO2804 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO4562 +0.5 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO2205 +0.4 1.3 hypothetical protein (NCBI ptt file) compare
SO3045.2 +0.4 2.4 hypothetical methyl-accepting chemotaxis protein (NCBI ptt file) compare
SO_A0107 +0.4 3.4 no description compare
SO0208 +0.4 2.2 RNA-binding protein (NCBI ptt file) compare
SOA0108 +0.4 3.9 hypothetical protein (NCBI ptt file) compare
SO2657 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO0474 +0.4 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO0603 hfq +0.4 0.4 host factor-I protein (NCBI ptt file) compare
SO4686 +0.4 3.2 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) compare
SO0853 +0.4 1.9 pilin, putative (NCBI ptt file) compare
SO2529 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO2327 cheB-2 +0.4 1.8 protein-glutamate methylesterase CheB (NCBI ptt file) compare
SO0775 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO3239 flgL +0.4 1.3 flagellar hook-associated protein FlgL (NCBI ptt file) compare
SO3151 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO4335 +0.4 2.8 phosphatidylglycerophosphatase B, putative (NCBI ptt file) compare
SO2988 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO1344 rseB +0.4 1.2 sigma-E factor regulatory protein RseB (NCBI ptt file) compare
SO3228 fliF +0.4 3.0 flagellar M-ring protein FliF (NCBI ptt file) compare
SO_2754 +0.4 1.6 no description compare
SO1703 +0.4 1.2 transcriptional regulator, TetR family (NCBI ptt file) compare
SO1662 +0.4 1.6 hypothetical Ccm2-related protein (NCBI ptt file) compare
SO4110 +0.4 2.8 MSHA biogenesis protein MshN, putative (NCBI ptt file) compare
SO2968 +0.4 2.2 hypothetical phage terminase, small subunit (NCBI ptt file) compare
SO4368 +0.4 1.1 acyl carrier protein, putative (NCBI ptt file) compare
SO1256 +0.4 1.3 hypothetical 4-hydroxybenzoyl-CoA thioesterase (NCBI ptt file) compare
SO4185 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO1155 +0.4 1.9 hypothetical protein (NCBI ptt file) compare
SOA0085 +0.4 0.9 ISSod8, transposase (NCBI ptt file) compare
SO1960 +0.4 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO4004 +0.4 2.7 proton/glutamate symporter, putative (NCBI ptt file) compare
SO3351 pilT +0.4 2.2 twitching motility protein PilT (NCBI ptt file) compare
SO2459 cga +0.4 2.9 glucoamylase (NCBI ptt file) compare
SO1453 +0.4 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO2576 minC +0.4 2.3 septum site-determining protein MinC (NCBI ptt file) compare
SO_3139 +0.4 2.7 no description compare
SO4114.2 +0.4 2.8 hypothetical biogenesis protein MshI (NCBI ptt file) compare
SO3205 +0.4 2.4 hypothetical protein (NCBI ptt file) compare
SO0084 +0.4 2.1 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file) compare
SO0569 +0.4 2.8 sensory box/GGDEF family protein (NCBI ptt file) compare
SO0472.1 +0.4 1.4 hypothetical mitomycin resistance protein (NCBI ptt file) compare
SO3076 +0.4 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO2958 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO3676 +0.4 0.9 hypothetical protein (NCBI ptt file) compare
SO4716 +0.4 1.7 acetyltransferase, GNAT family (NCBI ptt file) compare
SO3715 +0.4 2.5 oxygen-insensitive NAD(P)H nitroreductase (NCBI ptt file) compare
SO3250 flgB +0.4 1.7 flagellar basal-body rod protein FlgB (NCBI ptt file) compare
SO0045 +0.4 0.7 Rrf2 family protein (NCBI ptt file) compare
SO2067 hisI +0.4 0.9 phosphoribosyl-ATP pyrophosphatase/phosphoribosyl-AMP cyclohydrolase (NCBI ptt file) compare
SO3010 +0.4 1.9 hypothetical protein (NCBI ptt file) compare
SO2110 +0.4 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO2957 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO0041 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO4177 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO2985 O +0.4 1.8 prophage LambdaSo, replication protein O (NCBI ptt file) compare
SO3686 +0.4 1.5 curli production assembly/transport component CsgF, putative (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Shewanella oneidensis MR-1 in electron acceptor experiments

For electron acceptor Sodium D,L-Lactate across organisms