Experiment set8IT074 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS13920 -7.0 -9.6 magnesium-translocating P-type ATPase compare
BWI76_RS18940 -6.9 -7.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS01325 -6.8 -4.2 twin-arginine translocase subunit TatB compare
BWI76_RS26085 -6.4 -4.1 3-dehydroquinate synthase compare
BWI76_RS21070 -6.4 -4.0 outer membrane protein assembly factor BamB compare
BWI76_RS08385 -6.1 -5.4 citrate (Si)-synthase compare
BWI76_RS00855 -5.9 -10.5 argininosuccinate lyase compare
BWI76_RS18950 -5.9 -3.7 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS26665 -5.7 -4.5 DNA-binding response regulator compare
BWI76_RS02530 -5.5 -3.8 tRNA dimethylallyltransferase compare
BWI76_RS04465 -5.5 -6.8 carbamoyl-phosphate synthase small subunit compare
BWI76_RS00345 -5.5 -3.8 protein disulfide oxidoreductase DsbA compare
BWI76_RS23360 -5.4 -5.9 diaminopimelate decarboxylase compare
BWI76_RS25220 -5.4 -5.1 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS11840 -5.4 -5.6 tryptophan synthase subunit alpha compare
BWI76_RS26570 -5.2 -5.1 anion permease compare
BWI76_RS23920 -5.0 -7.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS01330 -5.0 -5.2 twin-arginine translocase subunit TatC compare
BWI76_RS19845 -5.0 -8.3 phosphatase compare
BWI76_RS18935 -4.9 -7.6 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04470 -4.7 -11.9 carbamoyl phosphate synthase large subunit compare
BWI76_RS24400 -4.7 -10.7 outer membrane channel protein TolC compare
BWI76_RS07070 -4.7 -6.8 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04250 -4.6 -8.2 homoserine kinase compare
BWI76_RS00400 -4.6 -2.9 glutamine synthetase compare
BWI76_RS25115 -4.6 -6.4 argininosuccinate synthase compare
BWI76_RS00785 -4.6 -6.2 cystathionine gamma-synthase compare
BWI76_RS04665 -4.5 -20.0 3-isopropylmalate dehydratase small subunit compare
BWI76_RS15115 -4.5 -6.1 MFS transporter compare
BWI76_RS11845 -4.5 -4.1 tryptophan synthase subunit beta compare
BWI76_RS20895 -4.4 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04645 -4.4 -5.6 3-dehydroquinase compare
BWI76_RS05260 -4.4 -2.3 chaperone compare
BWI76_RS18140 -4.3 -4.2 zinc ABC transporter permease compare
BWI76_RS04530 -4.3 -3.0 peptidylprolyl isomerase SurA compare
BWI76_RS18930 -4.3 -4.7 histidinol-phosphate transaminase compare
BWI76_RS01615 -4.3 -11.6 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS05835 -4.3 -4.5 gamma-glutamyl-phosphate reductase compare
BWI76_RS23265 -4.3 -4.3 hypothetical protein compare
BWI76_RS25225 -4.2 -10.2 ABC transporter permease compare
BWI76_RS00180 -4.2 -2.2 F0F1 ATP synthase subunit epsilon compare
BWI76_RS23240 -4.2 -2.9 exonuclease V subunit gamma compare
BWI76_RS04670 -4.2 -8.2 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04510 -4.2 -2.4 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS05015 -4.1 -3.7 transcriptional regulator compare
BWI76_RS04685 -4.0 -11.2 putative leucine operon leader peptide compare
BWI76_RS20965 -4.0 -5.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04675 -4.0 -6.4 3-isopropylmalate dehydrogenase compare
BWI76_RS04255 -3.9 -9.6 threonine synthase compare
BWI76_RS00980 -3.9 -11.1 PLP-dependent threonine dehydratase compare
BWI76_RS00975 -3.9 -8.3 dihydroxy-acid dehydratase compare
BWI76_RS05840 -3.9 -6.1 glutamate 5-kinase compare
BWI76_RS25215 -3.9 -6.7 phospholipid-binding protein MlaC compare
BWI76_RS18920 -3.8 -4.1 ATP phosphoribosyltransferase compare
BWI76_RS04680 -3.8 -14.6 2-isopropylmalate synthase compare
BWI76_RS03010 -3.8 -5.4 ornithine carbamoyltransferase compare
BWI76_RS18925 -3.8 -6.8 histidinol dehydrogenase compare
BWI76_RS25230 -3.8 -11.1 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS18955 -3.7 -7.8 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS07065 -3.7 -10.0 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS11850 -3.7 -7.3 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS00850 -3.7 -12.7 acetylglutamate kinase compare
BWI76_RS21265 -3.7 -10.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS09755 -3.6 -9.7 phosphoserine transaminase compare
BWI76_RS09660 -3.6 -2.5 DNA translocase FtsK compare
BWI76_RS23230 -3.6 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS06780 -3.5 -7.5 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS20475 -3.5 -6.9 phospholipid-binding lipoprotein MlaA compare
BWI76_RS00845 -3.4 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01610 -3.4 -8.4 phosphoribosylamine--glycine ligase compare
BWI76_RS11860 -3.4 -6.9 anthranilate synthase component I compare
BWI76_RS04245 -3.4 -13.3 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS21475 -3.4 -4.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS00990 -3.4 -7.4 ketol-acid reductoisomerase compare
BWI76_RS23220 -3.4 -6.3 amino-acid N-acetyltransferase compare
BWI76_RS10990 -3.4 -4.0 dihydroorotase compare
BWI76_RS26670 -3.4 -8.3 two-component sensor histidine kinase compare
BWI76_RS20650 -3.3 -3.2 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS04160 -3.3 -8.6 phosphoserine phosphatase compare
BWI76_RS23480 -3.3 -12.1 EAL domain-containing protein compare
BWI76_RS20350 -3.2 -6.0 amidophosphoribosyltransferase compare
BWI76_RS09645 -3.2 -2.7 thioredoxin-disulfide reductase compare
BWI76_RS21465 -3.2 -4.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS23365 -3.2 -8.2 LysR family transcriptional regulator compare
BWI76_RS20355 -3.2 -3.2 colicin V production protein compare
BWI76_RS18135 -3.1 -5.8 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS06525 -3.1 -6.8 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS00960 -3.0 -7.1 acetolactate synthase 2 catalytic subunit compare
BWI76_RS25645 -3.0 -5.1 shikimate dehydrogenase compare
BWI76_RS24285 -2.9 -7.4 cystathionine beta-lyase compare
BWI76_RS09760 -2.9 -3.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS01800 -2.8 -4.8 glucose-6-phosphate isomerase compare
BWI76_RS06530 -2.8 -5.3 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS00875 -2.8 -8.2 DNA-binding transcriptional regulator FabR compare
BWI76_RS01655 -2.8 -6.1 homoserine O-succinyltransferase compare
BWI76_RS04240 -2.8 -2.5 thr operon leader peptide compare
BWI76_RS00805 -2.8 -6.8 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS02815 -2.8 -3.3 fructose-bisphosphatase class I compare
BWI76_RS19840 -2.8 -1.8 hypothetical protein compare
BWI76_RS11855 -2.7 -6.5 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS06775 -2.7 -13.2 multidrug efflux RND transporter permease subunit compare
BWI76_RS04705 -2.7 -6.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS00835 -2.7 -12.3 phosphoenolpyruvate carboxylase compare
BWI76_RS01210 -2.6 -2.0 tyrosine recombinase XerC compare
BWI76_RS05200 -2.6 -3.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS09910 -2.6 -13.4 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS00720 -2.6 -2.7 DNA-binding response regulator compare
BWI76_RS11965 -2.6 -7.4 orotidine-5'-phosphate decarboxylase compare
BWI76_RS25300 -2.6 -2.8 hybrid sensor histidine kinase/response regulator compare
BWI76_RS24850 -2.6 -6.0 DeoR family transcriptional regulator compare
BWI76_RS13420 -2.6 -3.0 ABC transporter permease compare
BWI76_RS27385 -2.5 -8.5 orotate phosphoribosyltransferase compare
BWI76_RS18130 -2.5 -4.6 zinc ABC transporter substrate-binding protein compare
BWI76_RS04715 -2.5 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS15225 -2.4 -2.0 DeoR family transcriptional regulator compare
BWI76_RS20435 -2.3 -1.8 chorismate synthase compare
BWI76_RS02995 -2.3 -6.2 aspartate carbamoyltransferase compare
BWI76_RS04525 -2.3 -2.9 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS06765 -2.3 -3.3 transcriptional regulator compare
BWI76_RS26620 -2.2 -1.6 Fe-S biogenesis protein NfuA compare
BWI76_RS00965 -2.1 -1.6 acetolactate synthase 2 small subunit compare
BWI76_RS20155 -2.1 -2.5 NADH-quinone oxidoreductase subunit I compare
BWI76_RS08605 -2.1 -3.0 phosphoglyceromutase compare
BWI76_RS26000 -2.0 -6.2 aspartate aminotransferase family protein compare
BWI76_RS19805 -2.0 -4.6 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS01275 -2.0 -6.8 LysR family transcriptional regulator compare
BWI76_RS20150 -2.0 -2.4 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS00970 -2.0 -4.6 branched chain amino acid aminotransferase compare
BWI76_RS16490 -1.9 -2.6 glutaredoxin compare
BWI76_RS16535 -1.9 -6.3 MATE family efflux transporter conserved
BWI76_RS06735 -1.9 -2.3 50S ribosomal protein L31 compare
BWI76_RS09640 -1.9 -4.3 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS17975 -1.9 -3.0 tail-specific protease compare
BWI76_RS20145 -1.9 -2.1 NADH-quinone oxidoreductase subunit K compare
BWI76_RS16990 -1.9 -4.7 ABC transporter ATP-binding protein compare
BWI76_RS27430 -1.9 -1.5 (p)ppGpp synthetase compare
BWI76_RS22650 -1.9 -4.8 lipoprotein NlpD compare
BWI76_RS22240 -1.9 -5.9 transcriptional regulator compare
BWI76_RS19905 -1.9 -5.4 OmpK36 porin compare
BWI76_RS15850 -1.9 -1.4 DUF1317 domain-containing protein compare
BWI76_RS27290 -1.8 -8.1 hypothetical protein compare
BWI76_RS13915 -1.8 -4.2 magnesium transport protein MgtC compare
BWI76_RS00985 -1.8 -5.3 transcriptional regulator IlvY compare
BWI76_RS01350 -1.8 -1.4 NAD(P)H-flavin reductase compare
BWI76_RS06770 -1.8 -9.5 Hha toxicity attenuator compare
BWI76_RS21000 -1.7 -4.3 exopolyphosphatase compare
BWI76_RS16980 -1.7 -5.0 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS27390 -1.7 -3.4 ribonuclease PH compare
BWI76_RS07730 -1.7 -1.7 iron-enterobactin transporter membrane protein compare
BWI76_RS12090 -1.7 -2.0 HNH endonuclease compare
BWI76_RS15955 -1.6 -5.2 transcriptional regulator compare
BWI76_RS08495 -1.6 -3.4 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS23915 -1.6 -1.8 5-formyltetrahydrofolate cyclo-ligase compare
BWI76_RS27440 -1.6 -3.2 DNA helicase RecG compare
BWI76_RS04305 -1.6 -1.3 molecular chaperone DnaJ compare
BWI76_RS08500 -1.6 -2.4 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS23830 -1.5 -6.7 hypothetical protein compare
BWI76_RS17190 -1.5 -2.0 TonB system transport protein TonB compare
BWI76_RS07185 -1.5 -2.2 hypothetical protein compare
BWI76_RS27310 -1.5 -7.4 glycosyltransferase compare
BWI76_RS16090 -1.5 -1.4 two-component system response regulator DcuR compare
BWI76_RS16995 -1.5 -5.6 Fe-S cluster assembly protein SufB compare
BWI76_RS16975 -1.5 -5.2 cysteine desufuration protein SufE compare
BWI76_RS27475 -1.5 -7.1 regulatory protein GntR family protein compare
BWI76_RS20270 -1.4 -4.0 hypothetical protein compare
BWI76_RS21350 -1.4 -2.1 anti-RNA polymerase sigma factor SigE compare
BWI76_RS09860 -1.4 -2.8 hypothetical protein compare
BWI76_RS05555 -1.4 -3.4 Crl family RNA polymerase assembly factor compare
BWI76_RS01090 -1.4 -4.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01195 -1.4 -2.2 membrane protein compare
BWI76_RS05450 -1.3 -1.9 ribonuclease HI compare
BWI76_RS20440 -1.3 -2.2 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS20130 -1.3 -5.4 NADH-quinone oxidoreductase subunit N compare
BWI76_RS12955 -1.3 -8.3 multidrug efflux RND transporter permease subunit OqxB compare
BWI76_RS15840 -1.3 -2.2 prophage protein compare
BWI76_RS15110 -1.3 -7.5 putative excinuclease ABC subunit A compare
BWI76_RS26395 -1.3 -3.1 cell division protein FtsE compare
BWI76_RS27305 -1.3 -5.2 glycosyl transferase compare
BWI76_RS22645 -1.3 -3.6 RNA polymerase sigma factor RpoS compare
BWI76_RS25505 -1.3 -4.9 RNase E specificity factor CsrD compare
BWI76_RS17000 -1.3 -5.6 Fe-S cluster assembly scaffold SufA compare
BWI76_RS05135 -1.3 -3.6 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS26940 -1.3 -6.6 transcriptional regulator compare
BWI76_RS26175 -1.3 -3.0 DeoR/GlpR family transcriptional regulator compare
BWI76_RS01095 -1.3 -2.2 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS02580 -1.3 -1.9 23S rRNA (guanosine(2251)-2'-O)-methyltransferase compare
BWI76_RS13595 -1.2 -3.3 transcriptional regulator compare
BWI76_RS26775 -1.2 -5.2 endo-1,4-D-glucanase compare
BWI76_RS09655 -1.2 -2.7 leucine-responsive regulatory protein compare
BWI76_RS15060 -1.2 -2.5 MarR family transcriptional regulator compare
BWI76_RS05130 -1.2 -3.8 iron-hydroxamate transporter ATP-binding subunit conserved
BWI76_RS22625 -1.2 -1.8 transcriptional regulator compare
BWI76_RS20165 -1.2 -4.0 NADH-quinone oxidoreductase subunit G compare
BWI76_RS05125 -1.2 -7.9 ferrichrome porin FhuA compare
BWI76_RS25065 -1.2 -2.5 polyribonucleotide nucleotidyltransferase compare
BWI76_RS06800 -1.2 -1.3 DUF2496 domain-containing protein compare
BWI76_RS24280 -1.2 -2.8 biopolymer transporter ExbB compare
BWI76_RS20160 -1.2 -2.5 NADH-quinone oxidoreductase subunit H compare
BWI76_RS01185 -1.2 -2.0 adenylate cyclase compare
BWI76_RS08210 -1.2 -2.2 N-acetylglucosamine-6-phosphate deacetylase compare


Specific Phenotypes

For 7 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms