Experiment set8IT074 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS20995 +2.9 19.7 RNA degradosome polyphosphate kinase compare
BWI76_RS07465 +2.5 11.8 TetR family transcriptional regulator compare
BWI76_RS00140 +2.2 5.9 phosphate transport system regulator PhoU compare
BWI76_RS26470 +2.2 15.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS26465 +2.1 17.1 4-amino-4-deoxy-L-arabinose lipid A transferase compare
BWI76_RS20640 +2.1 7.1 cysteine synthase A compare
BWI76_RS01890 +2.0 12.9 transcriptional regulator Zur compare
BWI76_RS26685 +1.9 9.5 glutathione-disulfide reductase compare
BWI76_RS27675 +1.9 13.0 EmrB/QacA family drug resistance transporter compare
BWI76_RS26480 +1.9 12.5 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS26455 +1.8 6.8 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS26475 +1.8 11.4 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS26485 +1.7 12.0 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS09825 +1.7 13.5 envelope biogenesis factor ElyC compare
BWI76_RS11275 +1.6 11.7 sensor protein PhoQ compare
BWI76_RS26460 +1.6 9.8 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS00865 +1.5 7.8 DNA-binding transcriptional regulator OxyR compare
BWI76_RS06535 +1.4 5.3 endopeptidase La compare
BWI76_RS24480 +1.4 8.5 undecaprenyl-diphosphatase compare
BWI76_RS01070 +1.3 5.9 thiol reductase thioredoxin compare
BWI76_RS20375 +1.2 2.8 membrane protein compare
BWI76_RS22685 +1.1 5.3 hypothetical protein compare
BWI76_RS24075 +1.1 5.9 glutathione synthase compare
BWI76_RS24575 +1.0 2.5 hypothetical protein compare
BWI76_RS26580 +1.0 3.9 universal stress protein A compare
BWI76_RS01385 +1.0 4.0 potassium transporter compare
BWI76_RS05440 +1.0 5.5 hydroxyacylglutathione hydrolase compare
BWI76_RS05005 +1.0 3.7 polynucleotide adenylyltransferase compare
BWI76_RS03080 +1.0 4.2 (Fe-S)-cluster assembly protein compare
BWI76_RS24585 +0.9 2.5 glycerol dehydrogenase compare
BWI76_RS27425 +0.9 2.2 DNA-directed RNA polymerase subunit omega compare
BWI76_RS06680 +0.9 1.3 hypothetical protein compare
BWI76_RS10345 +0.9 7.5 MFS transporter compare
BWI76_RS18770 +0.9 1.6 DNA gyrase inhibitor compare
BWI76_RS22815 +0.8 6.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS25365 +0.8 5.6 serine endoprotease DegQ compare
BWI76_RS22085 +0.8 3.3 L-valine transporter subunit YgaH compare
BWI76_RS08840 +0.8 1.4 hypothetical protein compare
BWI76_RS18025 +0.8 3.0 spore coat U domain-containing protein compare
BWI76_RS06785 +0.8 3.3 DNA-binding transcriptional repressor AcrR compare
BWI76_RS26205 +0.8 3.1 glucose-1-phosphate adenylyltransferase compare
BWI76_RS09455 +0.8 2.6 YbjN domain-containing protein compare
BWI76_RS10350 +0.8 5.4 EamA family transporter compare
BWI76_RS11150 +0.8 2.3 membrane protein compare
BWI76_RS16195 +0.8 2.0 hypothetical protein compare
BWI76_RS24605 +0.8 6.0 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS04655 +0.8 2.9 shikimate dehydrogenase compare
BWI76_RS22090 +0.8 2.5 transcriptional regulator compare
BWI76_RS09030 +0.8 3.2 transpeptidase compare
BWI76_RS09180 +0.8 3.0 hypothetical protein compare
BWI76_RS24915 +0.8 5.6 penicillin-binding protein activator compare
BWI76_RS25475 +0.7 5.7 TIGR02099 family protein compare
BWI76_RS06745 +0.7 2.2 N-acetyltransferase GCN5 compare
BWI76_RS26125 +0.7 3.8 carboxypeptidase/penicillin-binding protein 1A compare
BWI76_RS05180 +0.7 5.0 serine endoprotease DegQ compare
BWI76_RS14015 +0.7 2.5 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS05075 +0.7 1.1 type II secretion system protein GspG compare
BWI76_RS18335 +0.7 4.0 DNA-binding response regulator compare
BWI76_RS17915 +0.7 4.2 membrane protein compare
BWI76_RS19690 +0.7 2.9 LysR family transcriptional regulator compare
BWI76_RS11525 +0.7 1.3 HNH endonuclease compare
BWI76_RS15075 +0.7 3.5 non-ribosomal peptide synthase compare
BWI76_RS26095 +0.7 1.5 shikimate kinase compare
BWI76_RS23195 +0.7 2.1 ethanolamine utilization protein EutP compare
BWI76_RS15530 +0.7 2.7 hypothetical protein compare
BWI76_RS02800 +0.7 3.3 ABC transporter compare
BWI76_RS20915 +0.7 4.9 peroxiredoxin compare
BWI76_RS20455 +0.7 3.6 multifunctional fatty acid oxidation complex subunit alpha compare
BWI76_RS17965 +0.7 1.7 MFS transporter compare
BWI76_RS17080 +0.7 4.5 hypothetical protein compare
BWI76_RS17770 +0.7 0.9 isomerase/hydrolase compare
BWI76_RS05885 +0.7 2.2 anion permease compare
BWI76_RS00940 +0.7 4.3 transcriptional regulator HdfR compare
BWI76_RS16015 +0.7 1.4 pheromone autoinducer 2 transporter compare
BWI76_RS27200 +0.7 2.8 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL compare
BWI76_RS09625 +0.7 1.5 hypothetical protein compare
BWI76_RS26215 +0.7 4.0 glycogen-branching enzyme compare
BWI76_RS15825 +0.6 1.5 hypothetical protein compare
BWI76_RS18240 +0.6 1.8 L-arabinose ABC transporter permease AraH compare
BWI76_RS13590 +0.6 1.2 hypothetical protein compare
BWI76_RS15080 +0.6 5.4 hypothetical protein compare
BWI76_RS22215 +0.6 1.6 PTS sorbitol transporter subunit IIC compare
BWI76_RS00715 +0.6 1.7 two-component sensor histidine kinase compare
BWI76_RS21075 +0.6 1.2 membrane protein compare
BWI76_RS06520 +0.6 2.3 trigger factor compare
BWI76_RS02440 +0.6 1.8 fumarate reductase subunit D compare
BWI76_RS17910 +0.6 3.0 hypothetical protein compare
BWI76_RS17405 +0.6 2.9 cation transport regulator compare
BWI76_RS12285 +0.6 2.4 hypothetical protein compare
BWI76_RS20230 +0.6 1.5 hypothetical protein compare
BWI76_RS17970 +0.6 2.0 zinc metalloprotease HtpX compare
BWI76_RS05235 +0.6 1.2 hypothetical protein compare
BWI76_RS13240 +0.6 1.5 hypothetical protein compare
BWI76_RS25655 +0.6 1.7 DNA topoisomerase type IA zn finger domain-containing protein compare
BWI76_RS00765 +0.6 3.7 DNA-binding transcriptional regulator CytR compare
BWI76_RS19605 +0.6 2.9 CidB/LrgB family autolysis modulator compare
BWI76_RS15925 +0.6 2.5 dimethyl sulfoxide reductase subunit A compare
BWI76_RS14435 +0.6 1.4 glutamine ABC transporter ATP-binding protein compare
BWI76_RS00725 +0.6 2.7 periplasmic repressor CpxP compare
BWI76_RS23970 +0.6 1.4 mechanosensitive ion channel protein MscS compare
BWI76_RS14770 +0.6 1.3 PTS IIA 2 domain protein compare
BWI76_RS01085 +0.6 1.5 polysaccharide chain length modulation protein compare
BWI76_RS20750 +0.6 0.9 carboxysome structural protein EutK compare
BWI76_RS09560 +0.6 1.1 DoxX family membrane protein compare
BWI76_RS16970 +0.6 2.6 murein L,D-transpeptidase compare
BWI76_RS20845 +0.6 2.9 GDP-mannose pyrophosphatase NudK compare
BWI76_RS04270 +0.6 2.2 transaldolase compare
BWI76_RS07760 +0.6 1.7 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase compare
BWI76_RS12495 +0.6 1.4 2-Cys peroxiredoxin compare
BWI76_RS24600 +0.6 2.6 dihydroxyacetone kinase compare
BWI76_RS14780 +0.6 2.1 phosphotriesterase compare
BWI76_RS27875 +0.6 1.0 membrane protein compare
BWI76_RS05490 +0.6 2.0 Na(+)-translocating NADH-quinone reductase subunit A compare
BWI76_RS15070 +0.6 5.1 non-ribosomal peptide synthetase compare
BWI76_RS01940 +0.6 1.9 hypothetical protein compare
BWI76_RS17300 +0.6 1.0 tRNA-Tyr compare
BWI76_RS02225 +0.6 1.9 phosphonate C-P lyase system protein PhnG compare
BWI76_RS23005 +0.6 2.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS17510 +0.5 2.7 selenium metabolism hydrolase compare
BWI76_RS18110 +0.5 3.2 transcriptional regulator HexR compare
BWI76_RS16675 +0.5 1.3 ABC transporter compare
BWI76_RS06915 +0.5 1.2 membrane protein compare
BWI76_RS08395 +0.5 1.5 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS16150 +0.5 1.1 IclR family transcriptional regulator compare
BWI76_RS15730 +0.5 2.0 hypothetical protein compare
BWI76_RS14615 +0.5 1.1 hypothetical protein compare
BWI76_RS16335 +0.5 1.3 division septum protein Blr compare
BWI76_RS22300 +0.5 1.5 hydrogenase 3 maturation endopeptidase HyCI compare
BWI76_RS23470 +0.5 4.3 hypothetical protein compare
BWI76_RS20000 +0.5 2.8 competence/damage-inducible protein A compare
BWI76_RS02875 +0.5 2.1 membrane protein compare
BWI76_RS22265 +0.5 1.2 NADH:flavorubredoxin oxidoreductase compare
BWI76_RS24770 +0.5 1.1 hypothetical protein compare
BWI76_RS17200 +0.5 1.1 hypothetical protein compare
BWI76_RS09315 +0.5 1.5 hypothetical protein compare
BWI76_RS27880 +0.5 2.5 6-phospho-alpha-glucosidase compare
BWI76_RS08375 +0.5 1.3 pyroglutamyl-peptidase I compare
BWI76_RS16765 +0.5 2.2 spermidine/putrescine ABC transporter permease compare
BWI76_RS17070 +0.5 2.4 phosphoenolpyruvate synthase regulatory protein compare
BWI76_RS20065 +0.5 2.1 1,4-dihydroxy-2-naphthoyl-CoA synthase compare
BWI76_RS02635 +0.5 1.8 3-keto-L-gulonate-6-phosphate decarboxylase compare
BWI76_RS06870 +0.5 3.1 aminoacyl-tRNA deacylase compare
BWI76_RS14835 +0.5 0.6 hypothetical protein compare
BWI76_RS01580 +0.5 1.7 hypothetical protein compare
BWI76_RS21115 +0.5 1.9 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS20565 +0.5 1.0 hypothetical protein compare
BWI76_RS18420 +0.5 3.6 DNA (cytosine-5-)-methyltransferase compare
BWI76_RS17715 +0.5 1.4 murein transglycosylase compare
BWI76_RS19785 +0.5 2.0 microcin C ABC transporter permease YejB compare
BWI76_RS27865 +0.5 1.8 hypothetical protein compare
BWI76_RS16920 +0.5 1.3 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS01170 +0.5 1.5 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS16515 +0.5 1.5 LysR family transcriptional regulator compare
BWI76_RS00225 +0.5 3.1 16S rRNA methyltransferase G compare
BWI76_RS27635 +0.5 1.9 AraC family transcriptional regulator compare
BWI76_RS15190 +0.5 1.9 GGDEF domain-containing protein compare
BWI76_RS14025 +0.5 3.0 NMT1/THI5 like domain-containing protein compare
BWI76_RS09035 +0.5 2.4 protein tyrosine/serine phosphatase compare
BWI76_RS13720 +0.5 1.6 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase compare
BWI76_RS12260 +0.5 1.6 hypothetical protein compare
BWI76_RS08275 +0.5 0.9 LexA regulated protein compare
BWI76_RS21340 +0.5 1.2 SoxR reducing system protein RseC compare
BWI76_RS05645 +0.5 1.6 fructuronate reductase compare
BWI76_RS15695 +0.5 2.9 hypothetical protein compare
BWI76_RS13090 +0.5 1.3 phenylacetate-CoA oxygenase subunit PaaA compare
BWI76_RS14740 +0.5 1.6 LysR family transcriptional regulator compare
BWI76_RS13380 +0.5 1.1 hypothetical protein compare
BWI76_RS12790 +0.5 1.0 lactate dehydrogenase compare
BWI76_RS11165 +0.5 2.9 beta-N-acetylhexosaminidase compare
BWI76_RS17805 +0.5 0.8 membrane protein compare
BWI76_RS10950 +0.5 1.2 MFS transporter compare
BWI76_RS04895 +0.5 0.8 hypothetical protein compare
BWI76_RS16030 +0.5 1.2 malonate decarboxylase acyl carrier protein compare
BWI76_RS01285 +0.5 2.5 amino acid ABC transporter substrate-binding protein compare
BWI76_RS16025 +0.5 1.0 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS25680 +0.5 2.3 16S rRNA m5C967 methyltransferase compare
BWI76_RS14225 +0.5 2.1 anti-ECF sigma factor ChrR compare
BWI76_RS06130 +0.5 1.6 extensin family protein compare
BWI76_RS20695 +0.5 1.1 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS16810 +0.5 1.8 RpiR family transcriptional regulator compare
BWI76_RS20635 +0.5 1.9 sulfate transporter CysZ compare
BWI76_RS05790 +0.5 1.0 phage DNA-binding protein compare
BWI76_RS16120 +0.5 1.2 4-carboxymuconolactone decarboxylase compare
BWI76_RS06635 +0.5 1.3 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS08870 +0.5 3.3 inner membrane transport permease YbhS compare
BWI76_RS12555 +0.5 1.3 hypothetical protein compare
BWI76_RS15540 +0.5 2.5 hypothetical protein compare
BWI76_RS09540 +0.5 1.3 hypothetical protein compare
BWI76_RS11455 +0.5 2.2 AraC family transcriptional regulator compare
BWI76_RS21375 +0.5 1.0 autonomous glycyl radical cofactor GrcA compare
BWI76_RS10305 +0.5 2.6 transposase compare
BWI76_RS06465 +0.5 1.3 IclR family transcriptional regulator compare
BWI76_RS11750 +0.4 1.7 chitooligosaccharide deacetylase compare
BWI76_RS16420 +0.4 1.1 anhydro-N-acetylmuramic acid kinase compare
BWI76_RS19600 +0.4 3.0 hypothetical protein compare
BWI76_RS26255 +0.4 2.0 oxidoreductase compare
BWI76_RS05880 +0.4 1.2 AraC-type DNA-binding domain-containing protein compare
BWI76_RS04055 +0.4 4.0 GGDEF domain-containing protein compare
BWI76_RS26030 +0.4 2.1 cytosine deaminase compare
BWI76_RS05760 +0.4 2.4 HxlR family transcriptional regulator compare


Specific Phenotypes

For 7 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms