Experiment set8IT073 for Shewanella oneidensis MR-1

Compare to:

Sodium fumarate electron acceptor

200 most detrimental genes:

  gene name fitness t score description  
SO2746 +1.5 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO1372 +1.5 3.1 conserved hypothetical protein (NCBI ptt file) compare
SO0216 +1.2 1.9 hypothetical protein (NCBI ptt file) compare
SO2986 +1.1 1.6 hypothetical protein (NCBI ptt file) compare
SO2430 ruvA +1.1 1.3 Holliday junction DNA helicase RuvA (NCBI ptt file) compare
SO_0419 +1.0 2.1 no description compare
SO1860 +1.0 4.0 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO0637 +1.0 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO2753.2 +0.9 3.0 hypothetical sodium-type flagellar protein MotY (NCBI ptt file) compare
SO3217 fliQ +0.9 4.8 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO3229 fliE +0.9 1.2 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SO_3457 +0.9 6.3 hybrid sensory histidine kinase BarA (RefSeq) compare
SO2181 +0.9 1.8 hypothetical protein (NCBI ptt file) compare
SO3261 +0.8 4.8 polysaccharide biosynthesis related-protein (NCBI ptt file) compare
SO3263 +0.8 5.0 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file) compare
SO3225 fliI +0.8 4.6 flagellum-specific ATP synthase FliI (NCBI ptt file) compare
SO3254 flgM +0.8 3.1 negative regulator of flagellin synthesis FlgM (NCBI ptt file) compare
SO2947 +0.8 2.2 hypothetical protein (NCBI ptt file) compare
SO1530 pomB +0.8 3.3 sodium-driven polar flagellar protein PomB (NCBI ptt file) compare
SO3953 +0.8 1.7 conserved hypothetical protein TIGR00056 (NCBI ptt file) compare
SO_2754 +0.8 2.8 no description compare
SO3648 +0.8 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3262 ilvB +0.8 5.9 acetolactate synthase isozyme I, large subunit (NCBI ptt file) compare
SO2987 +0.8 2.7 hypothetical protein (NCBI ptt file) compare
SO3270 +0.8 3.6 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO4368 +0.8 2.4 acyl carrier protein, putative (NCBI ptt file) compare
SO2984 +0.7 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO1331 +0.7 1.7 MutT/nudix family protein (NCBI ptt file) compare
SO3223 fliK +0.7 5.0 flagellar hook-length control protein FliK (NCBI ptt file) compare
SO3936 motX +0.7 5.5 sodium-type flagellar protein MotX (NCBI ptt file) compare
SOA0085 +0.7 1.7 ISSod8, transposase (NCBI ptt file) compare
SO3265 +0.7 5.0 conserved hypothetical protein (NCBI ptt file) compare
SO3244 flgG +0.7 3.0 flagellar basal-body rod protein FlgG (NCBI ptt file) compare
SO3249 flgC +0.7 3.2 flagellar basal-body rod protein FlgC (NCBI ptt file) compare
SO3676 +0.7 2.0 hypothetical protein (NCBI ptt file) compare
SOA0104 +0.7 2.1 hypothetical protein (NCBI ptt file) compare
SO4337 +0.7 3.9 transcriptional regulator, AsnC family (NCBI ptt file) compare
SO3239 flgL +0.7 3.5 flagellar hook-associated protein FlgL (NCBI ptt file) compare
SO1105 nqrC-2 +0.7 1.4 NADH:ubiquinone oxidoreductase, Na translocating, gamma subunit (NCBI ptt file) compare
SO2467.1 +0.7 1.8 hypothetical UV repair DNA polymerase (NCBI ptt file) compare
SO3219 fliO +0.7 2.9 flagellar protein FliO (NCBI ptt file) compare
SO3268 +0.7 5.0 alpha amylase domain protein (NCBI ptt file) compare
SO2237 ptsI +0.7 1.5 phosphoenolpyruvate-protein phosphotransferase (NCBI ptt file) compare
SO2332 +0.7 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO3224 fliJ +0.7 3.9 flagellar protein FliJ (NCBI ptt file) compare
SO_2786 +0.7 2.7 no description compare
SO2238 ptsH +0.7 1.2 phosphocarrier protein HPr (NCBI ptt file) compare
SO3243 flgH +0.7 3.6 flagellar L-ring protein FlgH (NCBI ptt file) compare
SO0937 +0.7 2.2 hypothetical protein (NCBI ptt file) compare
SO1529 pomA +0.7 2.3 chemotaxis motA protein (NCBI ptt file) compare
SO_4115 +0.7 4.5 no description compare
SO2658 +0.6 1.2 hypothetical protein (NCBI ptt file) compare
SO1350 recO +0.6 2.0 DNA repair protein RecO (NCBI ptt file) compare
SO2601 +0.6 4.4 carboxyl-terminal protease (NCBI ptt file) compare
SO3273 +0.6 5.9 conserved hypothetical protein (NCBI ptt file) compare
SO2656 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
SO3258 +0.6 5.2 conserved hypothetical protein (NCBI ptt file) compare
SO3216 fliR +0.6 4.4 flagellar biosynthetic protein FliR (NCBI ptt file) compare
SO2014 +0.6 0.9 conserved hypothetical protein TIGR00103 (NCBI ptt file) compare
SO2472 +0.6 1.0 D-alanyl-D-alanine carboxypeptidase-related protein (NCBI ptt file) compare
SO1697 +0.6 2.2 hypothetical protein (NCBI ptt file) compare
SO0560 fhs +0.6 5.2 formate--tetrahydrofolate ligase (NCBI ptt file) compare
SO2510 +0.6 1.1 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO3364 +0.6 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO3253 +0.6 5.1 flagellar basal-body P-ring formation protein FlgA, putative (NCBI ptt file) compare
SO_1210 +0.6 3.5 lipoprotein NlpI (RefSeq) compare
SO4102 mshO +0.6 4.8 MSHA biogenesis protein MshO (NCBI ptt file) compare
SO0472.1 +0.6 2.3 hypothetical mitomycin resistance protein (NCBI ptt file) compare
SO2417 +0.6 1.8 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO3849 +0.6 1.6 conserved domain protein (NCBI ptt file) compare
SO3242 flgI +0.6 3.6 flagellar P-ring protein FlgI (NCBI ptt file) compare
SO0430 +0.6 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO3239.2 +0.6 2.8 hypothetical flagellar protein (NCBI ptt file) compare
SO0559 +0.6 3.0 MaoC domain protein (NCBI ptt file) compare
SO1298.3 +0.6 1.5 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO3983 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO3269 +0.6 4.4 cytidylyltransferase domain protein (NCBI ptt file) compare
SO3215 flhB +0.6 2.8 flagellar biosynthetic protein FlhB (NCBI ptt file) compare
SOA0127 +0.6 2.5 hypothetical protein (NCBI ptt file) compare
SO3213 flhA +0.6 4.2 flagellar biosynthesis protein FlhA (NCBI ptt file) compare
SO1570 +0.6 3.7 GGDEF domain protein (NCBI ptt file) compare
SO4101 mshP +0.6 3.2 MSHA biogenesis protein MshP (NCBI ptt file) compare
SO1669 tyrR +0.6 3.0 transcriptional regulatory protein TyrR (NCBI ptt file) compare
SO2989 +0.6 2.0 prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO3218 fliP +0.6 2.8 flagellar biosynthetic protein FliP (NCBI ptt file) compare
SO3271 +0.6 2.1 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO0769 argR +0.6 1.2 arginine repressor (NCBI ptt file) compare
SO2432 +0.6 3.1 conserved hypothetical protein TIGR01033 (NCBI ptt file) compare
SO1346 lepA +0.5 1.3 GTP-binding protein LepA (NCBI ptt file) compare
SO3221 fliM +0.5 2.0 flagellar motor switch protein FliM (NCBI ptt file) compare
SO4687 ugd +0.5 3.9 UDP-glucose 6-dehydrogenase (NCBI ptt file) compare
SO4112 mshL +0.5 3.5 MSHA biogenesis protein MshL (NCBI ptt file) compare
SO0051 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
SO4686 +0.5 3.5 NAD dependent epimerase/dehydratase family protein (NCBI ptt file) compare
SO3677 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
SO2998 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
SO0448 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
SO3076 +0.5 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO2739.1 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
SO4114 mshJ +0.5 3.0 MSHA biogenesis protein MshJ (NCBI ptt file) compare
SO3813 +0.5 1.6 hypothetical protein (NCBI ptt file) compare
SO1298.4 +0.5 1.8 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO3863 modA +0.5 2.7 molybdenum ABC transporter, periplasmic molybdenum-binding protein (NCBI ptt file) compare
SO2220 +0.5 1.5 MutT/nudix family protein (NCBI ptt file) compare
SO1578 +0.5 2.1 transcriptional regulator, TetR family (NCBI ptt file) compare
SO3169 +0.5 0.9 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO3112 yajC +0.5 1.3 preprotein translocase, YajC subunit (NCBI ptt file) compare
SO2431 ruvC +0.5 0.5 crossover junction endodeoxyribonuclease RuvC (NCBI ptt file) compare
SO1581 phnA +0.5 1.6 phnA protein (NCBI ptt file) compare
SO2983 +0.5 2.3 hypothetical protein (NCBI ptt file) compare
SO2614 +0.5 1.0 conserved hypothetical protein TIGR00247 (NCBI ptt file) compare
SO4109 mshE +0.5 3.8 MSHA biogenesis protein MshE (NCBI ptt file) compare
SO1320 +0.5 1.5 hypothetical protein (NCBI ptt file) compare
SO2476 +0.5 2.0 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO3640 apaG +0.5 1.7 apaG protein (NCBI ptt file) compare
SO2110 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO4369 +0.5 1.7 acyl carrier protein, putative (NCBI ptt file) compare
SO3924 +0.5 2.6 hypothetical protein (NCBI ptt file) compare
SO4100 mshQ +0.5 4.1 MSHA biogenesis protein MshQ (NCBI ptt file) compare
SO3234 +0.5 3.2 hypothetical protein (NCBI ptt file) compare
SO4423 +0.5 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO3245 flgF +0.5 3.2 flagellar basal-body rod protein FlgF (NCBI ptt file) compare
SO3952 +0.5 1.3 mce-related protein (NCBI ptt file) compare
SO1556 +0.5 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO3459 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
SO3151 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO4103 mshD +0.5 2.2 MSHA pilin protein MshD (NCBI ptt file) compare
SO2720 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO3226 fliH +0.5 2.9 flagellar assembly protein FliH (NCBI ptt file) compare
SO1152 +0.5 0.7 hypothetical protein (NCBI ptt file) compare
SO2627 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO2208 +0.5 1.2 phosphotyrosine protein phosphatase (NCBI ptt file) compare
SO4114.2 +0.5 3.3 hypothetical biogenesis protein MshI (NCBI ptt file) compare
SO3250 flgB +0.5 2.3 flagellar basal-body rod protein FlgB (NCBI ptt file) compare
SO4177 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
SO1050 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
SO2436 +0.5 1.5 methyltransferase, putative (NCBI ptt file) compare
SO0797 +0.5 2.0 hypothetical protein (NCBI ptt file) compare
SO3868 +0.5 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO_3118 +0.5 1.1 no description compare
SOA0108 +0.4 4.0 hypothetical protein (NCBI ptt file) compare
SO3623 +0.4 2.1 tetraheme cytochrome c (NCBI ptt file) compare
SO0849 napD +0.4 1.6 napD protein (NCBI ptt file) compare
SO2982 +0.4 2.9 hypothetical protein (NCBI ptt file) compare
SO2448 +0.4 1.6 MutT/nudix family protein (NCBI ptt file) compare
SO2659 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO1537 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO1170 +0.4 1.1 iojap domain protein (NCBI ptt file) compare
SO4002 +0.4 3.8 sensory transduction histidine kinase (NCBI ptt file) compare
SO2270 rimK-2 +0.4 2.2 ribosomal protein S6 modification protein (NCBI ptt file) compare
SO0453 fkbP-1 +0.4 2.1 peptidyl-prolyl cis-trans isomerase FkbP (NCBI ptt file) compare
SO1062 def-2 +0.4 1.0 polypeptide deformylase (NCBI ptt file) compare
SO3313 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO4631 greB +0.4 2.3 transcription elongation factor GreB (NCBI ptt file) compare
SO2207 +0.4 2.2 hypothetical protein (NCBI ptt file) compare
SO3003 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO2992 +0.4 2.4 hypothetical protein (NCBI ptt file) compare
SO2976 +0.4 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO1843 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO3205 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO0171 gspI +0.4 0.7 general secretion pathway protein I (NCBI ptt file) compare
SO4374 +0.4 3.2 histidine ammonia-lyase, putative (NCBI ptt file) compare
SO4547 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO0714 +0.4 2.4 monoheme cytochrome c (NCBI ptt file) compare
SO3884 +0.4 2.8 site-specific recombinase, phage integrase family (NCBI ptt file) compare
SO2484 +0.4 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO3227 fliG +0.4 2.6 flagellar motor switch protein FliG (NCBI ptt file) compare
SO2689 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2254 +0.4 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO2640 +0.4 2.1 transcriptional regulator, MarR family (NCBI ptt file) compare
SOA0057 +0.4 0.5 hypothetical protein (NCBI ptt file) compare
SO0695 +0.4 3.3 glutathione-regulated potassium-efflux system protein KefC, putative (NCBI ptt file) compare
SO3027 +0.4 2.2 hypothetical protein (NCBI ptt file) compare
SO0083 +0.4 1.9 carboxymuconolactone decarboxylase family protein (NCBI ptt file) compare
SO0198.1 +0.4 1.6 putative transposase (NCBI ptt file) compare
SO2759 upp +0.4 2.1 uracil phosphoribosyltransferase (NCBI ptt file) compare
SO1169 +0.4 1.8 conserved hypothetical protein TIGR00246 (NCBI ptt file) compare
SO_A0134 +0.4 3.0 no description compare
SO4108 mshG +0.4 2.9 MSHA biogenesis protein MshG (NCBI ptt file) compare
SO3210 fliA +0.4 2.4 RNA polymerase sigma-27 factor (NCBI ptt file) compare
SO2111 +0.4 1.1 hypothetical protein (NCBI ptt file) compare
SO0600 amiB +0.4 1.3 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
SO2968 +0.4 1.7 hypothetical phage terminase, small subunit (NCBI ptt file) compare
SO4585 ftsE +0.4 2.2 cell division ABC transporter, ATP-binding protein FtsE (NCBI ptt file) compare
SO4073 +0.4 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO1434.2 +0.4 1.2 hypothetical integrase (NCBI ptt file) compare
SO3367 +0.4 1.2 conserved hypothetical protein TIGR00091 (NCBI ptt file) compare
SO4672 glpE +0.4 1.0 glpE protein (NCBI ptt file) compare
SO_3139 +0.4 2.9 no description compare
SO2311 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO0306 +0.4 2.9 hypothetical protein (NCBI ptt file) compare
SO2286 +0.4 2.5 sulfate permease family protein (NCBI ptt file) compare
SO0347 +0.4 1.9 acyltransferase family protein (NCBI ptt file) compare
SO3016 +0.4 1.7 Sua5/YciO/YrdC/YwlC family protein (NCBI ptt file) compare
SO2177 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO1899 +0.4 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO2203 dgkA +0.4 1.8 diacylglycerol kinase (NCBI ptt file) compare
SO3972 +0.4 1.3 hypothetical transposase (NCBI ptt file) compare
SO2557 +0.4 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO_3579 +0.4 1.2 no description compare


Specific Phenotypes

None in this experiment

For Shewanella oneidensis MR-1 in electron acceptor experiments

For electron acceptor Sodium D,L-Lactate across organisms