Experiment set8IT073 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS18130 -9.8 -6.0 zinc ABC transporter substrate-binding protein compare
BWI76_RS05835 -7.6 -5.2 gamma-glutamyl-phosphate reductase compare
BWI76_RS09645 -6.9 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS04465 -6.4 -7.1 carbamoyl-phosphate synthase small subunit compare
BWI76_RS13920 -6.3 -10.5 magnesium-translocating P-type ATPase compare
BWI76_RS18135 -5.8 -5.2 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS18935 -5.6 -7.1 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS01330 -5.6 -5.5 twin-arginine translocase subunit TatC compare
BWI76_RS00345 -5.5 -3.8 protein disulfide oxidoreductase DsbA compare
BWI76_RS25230 -5.4 -6.0 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS19845 -5.3 -10.7 phosphatase compare
BWI76_RS18940 -5.3 -5.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS01325 -5.2 -4.2 twin-arginine translocase subunit TatB compare
BWI76_RS04470 -5.0 -10.2 carbamoyl phosphate synthase large subunit compare
BWI76_RS00855 -4.9 -9.6 argininosuccinate lyase compare
BWI76_RS20475 -4.9 -5.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS18930 -4.7 -4.7 histidinol-phosphate transaminase compare
BWI76_RS23265 -4.6 -3.7 hypothetical protein compare
BWI76_RS04665 -4.6 -17.6 3-isopropylmalate dehydratase small subunit compare
BWI76_RS26665 -4.6 -4.4 DNA-binding response regulator compare
BWI76_RS00400 -4.5 -2.8 glutamine synthetase compare
BWI76_RS01210 -4.5 -3.3 tyrosine recombinase XerC compare
BWI76_RS04675 -4.5 -5.5 3-isopropylmalate dehydrogenase compare
BWI76_RS26570 -4.5 -5.3 anion permease compare
BWI76_RS04255 -4.5 -10.5 threonine synthase compare
BWI76_RS15115 -4.5 -6.1 MFS transporter compare
BWI76_RS02815 -4.4 -2.5 fructose-bisphosphatase class I compare
BWI76_RS18955 -4.4 -7.1 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS09755 -4.3 -8.2 phosphoserine transaminase compare
BWI76_RS06780 -4.3 -8.2 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS04685 -4.3 -11.3 putative leucine operon leader peptide compare
BWI76_RS04530 -4.3 -3.0 peptidylprolyl isomerase SurA compare
BWI76_RS03010 -4.3 -7.7 ornithine carbamoyltransferase compare
BWI76_RS00990 -4.3 -12.3 ketol-acid reductoisomerase compare
BWI76_RS04680 -4.2 -12.7 2-isopropylmalate synthase compare
BWI76_RS24400 -4.2 -7.7 outer membrane channel protein TolC compare
BWI76_RS23240 -4.2 -2.9 exonuclease V subunit gamma compare
BWI76_RS00180 -4.2 -2.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS20435 -4.2 -2.1 chorismate synthase compare
BWI76_RS04510 -4.2 -3.3 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS18920 -4.1 -4.2 ATP phosphoribosyltransferase compare
BWI76_RS24850 -4.1 -6.9 DeoR family transcriptional regulator compare
BWI76_RS18140 -4.1 -5.5 zinc ABC transporter permease compare
BWI76_RS05840 -4.0 -5.1 glutamate 5-kinase compare
BWI76_RS04670 -3.9 -8.7 3-isopropylmalate dehydratase large subunit compare
BWI76_RS20650 -3.9 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS25115 -3.9 -8.2 argininosuccinate synthase compare
BWI76_RS26670 -3.8 -7.5 two-component sensor histidine kinase compare
BWI76_RS01615 -3.8 -10.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS07070 -3.8 -3.5 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS26085 -3.8 -2.7 3-dehydroquinate synthase compare
BWI76_RS25225 -3.8 -8.0 ABC transporter permease compare
BWI76_RS00845 -3.7 -10.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS02530 -3.7 -3.9 tRNA dimethylallyltransferase compare
BWI76_RS11845 -3.7 -5.2 tryptophan synthase subunit beta compare
BWI76_RS00805 -3.7 -3.2 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS00975 -3.6 -7.9 dihydroxy-acid dehydratase compare
BWI76_RS01800 -3.6 -4.6 glucose-6-phosphate isomerase compare
BWI76_RS25220 -3.6 -4.1 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS09660 -3.6 -2.5 DNA translocase FtsK compare
BWI76_RS04645 -3.6 -5.4 3-dehydroquinase compare
BWI76_RS25645 -3.6 -9.4 shikimate dehydrogenase compare
BWI76_RS23230 -3.6 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS04160 -3.5 -5.3 phosphoserine phosphatase compare
BWI76_RS18950 -3.5 -3.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS04250 -3.5 -6.9 homoserine kinase compare
BWI76_RS25215 -3.5 -4.7 phospholipid-binding protein MlaC compare
BWI76_RS11850 -3.5 -10.2 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS23365 -3.5 -7.2 LysR family transcriptional regulator compare
BWI76_RS01655 -3.5 -6.0 homoserine O-succinyltransferase compare
BWI76_RS18925 -3.4 -6.8 histidinol dehydrogenase compare
BWI76_RS00965 -3.4 -1.8 acetolactate synthase 2 small subunit compare
BWI76_RS23920 -3.4 -5.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS21465 -3.4 -3.0 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS00960 -3.4 -8.8 acetolactate synthase 2 catalytic subunit compare
BWI76_RS23360 -3.3 -3.1 diaminopimelate decarboxylase compare
BWI76_RS20895 -3.3 -3.6 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS04305 -3.3 -1.7 molecular chaperone DnaJ compare
BWI76_RS07065 -3.3 -6.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS11840 -3.3 -3.3 tryptophan synthase subunit alpha compare
BWI76_RS23480 -3.3 -12.3 EAL domain-containing protein compare
BWI76_RS20355 -3.3 -3.3 colicin V production protein compare
BWI76_RS08385 -3.2 -2.9 citrate (Si)-synthase compare
BWI76_RS04245 -3.1 -10.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00850 -3.1 -12.4 acetylglutamate kinase compare
BWI76_RS10990 -3.1 -4.4 dihydroorotase compare
BWI76_RS06525 -3.1 -5.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS19905 -3.1 -5.8 OmpK36 porin compare
BWI76_RS24285 -3.1 -10.8 cystathionine beta-lyase compare
BWI76_RS11860 -3.0 -8.4 anthranilate synthase component I compare
BWI76_RS19805 -2.9 -4.2 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS20350 -2.9 -9.4 amidophosphoribosyltransferase compare
BWI76_RS04705 -2.9 -9.4 DNA-binding transcriptional regulator FruR compare
BWI76_RS21265 -2.9 -12.1 phosphoribosylformylglycinamidine synthase compare
BWI76_RS23220 -2.9 -6.1 amino-acid N-acetyltransferase compare
BWI76_RS11855 -2.9 -8.1 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS01610 -2.9 -7.9 phosphoribosylamine--glycine ligase compare
BWI76_RS06775 -2.8 -12.7 multidrug efflux RND transporter permease subunit compare
BWI76_RS07185 -2.8 -2.7 hypothetical protein compare
BWI76_RS00785 -2.8 -5.8 cystathionine gamma-synthase compare
BWI76_RS09910 -2.7 -14.5 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS21475 -2.7 -3.6 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS15225 -2.7 -1.9 DeoR family transcriptional regulator compare
BWI76_RS26620 -2.7 -1.7 Fe-S biogenesis protein NfuA compare
BWI76_RS00720 -2.7 -2.8 DNA-binding response regulator compare
BWI76_RS00980 -2.6 -7.7 PLP-dependent threonine dehydratase compare
BWI76_RS01185 -2.6 -3.6 adenylate cyclase compare
BWI76_RS04240 -2.6 -3.9 thr operon leader peptide compare
BWI76_RS21000 -2.6 -6.3 exopolyphosphatase compare
BWI76_RS08500 -2.6 -3.9 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS20965 -2.5 -4.2 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS06530 -2.5 -6.8 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS04715 -2.5 -2.2 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS09760 -2.5 -3.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS01275 -2.4 -6.8 LysR family transcriptional regulator compare
BWI76_RS00835 -2.3 -11.0 phosphoenolpyruvate carboxylase compare
BWI76_RS13915 -2.3 -5.0 magnesium transport protein MgtC compare
BWI76_RS27385 -2.3 -6.7 orotate phosphoribosyltransferase compare
BWI76_RS02995 -2.3 -8.6 aspartate carbamoyltransferase compare
BWI76_RS16535 -2.2 -8.0 MATE family efflux transporter conserved
BWI76_RS05015 -2.2 -2.7 transcriptional regulator compare
BWI76_RS00875 -2.2 -5.3 DNA-binding transcriptional regulator FabR compare
BWI76_RS23885 -2.2 -2.0 2-octaprenylphenol hydroxylase compare
BWI76_RS15955 -2.2 -6.7 transcriptional regulator compare
BWI76_RS16995 -2.1 -6.8 Fe-S cluster assembly protein SufB compare
BWI76_RS26000 -2.1 -8.3 aspartate aminotransferase family protein compare
BWI76_RS11965 -2.1 -6.0 orotidine-5'-phosphate decarboxylase compare
BWI76_RS27165 -2.0 -3.0 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS26175 -2.0 -4.4 DeoR/GlpR family transcriptional regulator compare
BWI76_RS06770 -2.0 -9.8 Hha toxicity attenuator compare
BWI76_RS01115 -2.0 -3.5 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS20170 -2.0 -3.6 NADH-quinone oxidoreductase subunit F compare
BWI76_RS11335 -2.0 -1.9 tautomerase compare
BWI76_RS27290 -2.0 -10.1 hypothetical protein compare
BWI76_RS05200 -1.9 -2.7 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS08040 -1.9 -3.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS21350 -1.9 -4.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS05135 -1.9 -4.4 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS20270 -1.9 -4.4 hypothetical protein compare
BWI76_RS23830 -1.9 -6.8 hypothetical protein compare
BWI76_RS19840 -1.8 -1.5 hypothetical protein compare
BWI76_RS08520 -1.8 -3.6 colicin transporter TolQ compare
BWI76_RS06015 -1.8 -1.3 hypothetical protein compare
BWI76_RS16980 -1.8 -4.1 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS09860 -1.8 -4.3 hypothetical protein compare
BWI76_RS05260 -1.8 -1.9 chaperone compare
BWI76_RS15060 -1.8 -4.5 MarR family transcriptional regulator compare
BWI76_RS01135 -1.8 -4.2 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS06765 -1.8 -2.3 transcriptional regulator compare
BWI76_RS08495 -1.7 -4.7 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS16990 -1.7 -4.9 ABC transporter ATP-binding protein compare
BWI76_RS08210 -1.7 -2.8 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS22240 -1.7 -6.3 transcriptional regulator compare
BWI76_RS17190 -1.7 -2.7 TonB system transport protein TonB compare
BWI76_RS15840 -1.7 -2.7 prophage protein compare
BWI76_RS15110 -1.7 -9.1 putative excinuclease ABC subunit A compare
BWI76_RS01125 -1.6 -4.5 4-alpha-L-fucosyltransferase compare
BWI76_RS20155 -1.6 -2.0 NADH-quinone oxidoreductase subunit I compare
BWI76_RS17290 -1.6 -5.4 formyltetrahydrofolate deformylase compare
BWI76_RS20135 -1.6 -2.3 NADH-quinone oxidoreductase subunit M compare
BWI76_RS01090 -1.6 -4.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS15835 -1.6 -1.2 hypothetical protein compare
BWI76_RS09650 -1.6 -7.3 hypothetical protein compare
BWI76_RS11700 -1.6 -1.8 hypothetical protein compare
BWI76_RS26395 -1.6 -3.0 cell division protein FtsE compare
BWI76_RS21070 -1.6 -1.7 outer membrane protein assembly factor BamB compare
BWI76_RS15850 -1.6 -1.1 DUF1317 domain-containing protein compare
BWI76_RS27390 -1.5 -5.0 ribonuclease PH compare
BWI76_RS01110 -1.5 -4.9 TDP-fucosamine acetyltransferase compare
BWI76_RS16975 -1.5 -5.2 cysteine desufuration protein SufE compare
BWI76_RS01195 -1.5 -2.2 membrane protein compare
BWI76_RS24275 -1.5 -2.9 biopolymer transport protein ExbD compare
BWI76_RS01080 -1.5 -5.4 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS13595 -1.5 -3.5 transcriptional regulator compare
BWI76_RS25300 -1.5 -1.8 hybrid sensor histidine kinase/response regulator compare
BWI76_RS25600 -1.5 -1.2 tRNA-Thr compare
BWI76_RS25065 -1.4 -2.1 polyribonucleotide nucleotidyltransferase compare
BWI76_RS09655 -1.4 -4.1 leucine-responsive regulatory protein compare
BWI76_RS05555 -1.4 -3.1 Crl family RNA polymerase assembly factor compare
BWI76_RS27475 -1.4 -7.3 regulatory protein GntR family protein compare
BWI76_RS24280 -1.4 -2.8 biopolymer transporter ExbB compare
BWI76_RS16485 -1.4 -1.7 ribonuclease T compare
BWI76_RS06735 -1.4 -1.9 50S ribosomal protein L31 compare
BWI76_RS27310 -1.4 -6.6 glycosyltransferase compare
BWI76_RS23825 -1.4 -6.7 hypothetical protein compare
BWI76_RS08525 -1.4 -3.5 colicin transporter compare
BWI76_RS09640 -1.3 -2.5 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS06540 -1.3 -1.9 DNA-binding protein HU-beta compare
BWI76_RS05130 -1.3 -5.6 iron-hydroxamate transporter ATP-binding subunit conserved
BWI76_RS06740 -1.3 -3.2 50S ribosomal protein L36 compare
BWI76_RS12955 -1.3 -7.3 multidrug efflux RND transporter permease subunit OqxB compare
BWI76_RS11900 -1.3 -1.4 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
BWI76_RS19850 -1.3 -2.8 tRNA-Pro compare
BWI76_RS18545 -1.3 -4.4 AMP nucleosidase compare
BWI76_RS27235 -1.3 -7.1 murein hydrolase activator EnvC compare
BWI76_RS22650 -1.3 -2.7 lipoprotein NlpD compare
BWI76_RS20900 -1.3 -1.7 outer membrane protein assembly factor BamC compare
BWI76_RS05140 -1.3 -3.7 Fe3+-hydroxamate ABC transporter permease FhuB conserved
BWI76_RS02180 -1.3 -1.7 hypothetical protein compare
BWI76_RS12470 -1.2 -1.8 thiosulfate sulfurtransferase PspE compare


Specific Phenotypes

For 12 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms