Experiment set8IT073 for Klebsiella michiganensis M5al

Compare to:

Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS07465 +3.3 16.5 TetR family transcriptional regulator compare
BWI76_RS20995 +3.3 23.2 RNA degradosome polyphosphate kinase compare
BWI76_RS26685 +2.9 20.1 glutathione-disulfide reductase compare
BWI76_RS26465 +2.8 23.9 4-amino-4-deoxy-L-arabinose lipid A transferase compare
BWI76_RS00140 +2.7 7.7 phosphate transport system regulator PhoU compare
BWI76_RS26480 +2.6 19.5 undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase compare
BWI76_RS26475 +2.4 15.3 bifunctional UDP-glucuronic acid oxidase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase compare
BWI76_RS26470 +2.4 16.1 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS20640 +2.3 10.5 cysteine synthase A compare
BWI76_RS01890 +2.3 10.4 transcriptional regulator Zur compare
BWI76_RS27675 +2.3 16.2 EmrB/QacA family drug resistance transporter compare
BWI76_RS26485 +2.2 10.6 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase compare
BWI76_RS11275 +2.2 17.5 sensor protein PhoQ compare
BWI76_RS27425 +1.8 6.8 DNA-directed RNA polymerase subunit omega compare
BWI76_RS09825 +1.7 13.1 envelope biogenesis factor ElyC compare
BWI76_RS00865 +1.7 8.7 DNA-binding transcriptional regulator OxyR compare
BWI76_RS17915 +1.7 9.6 membrane protein compare
BWI76_RS26460 +1.6 7.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS24480 +1.6 11.5 undecaprenyl-diphosphatase compare
BWI76_RS26455 +1.5 8.0 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS24075 +1.5 7.5 glutathione synthase compare
BWI76_RS01070 +1.4 7.3 thiol reductase thioredoxin compare
BWI76_RS20375 +1.4 4.3 membrane protein compare
BWI76_RS06535 +1.4 5.3 endopeptidase La compare
BWI76_RS09030 +1.4 6.5 transpeptidase compare
BWI76_RS03080 +1.3 5.0 (Fe-S)-cluster assembly protein compare
BWI76_RS21375 +1.3 1.3 autonomous glycyl radical cofactor GrcA compare
BWI76_RS05440 +1.3 8.1 hydroxyacylglutathione hydrolase compare
BWI76_RS05235 +1.3 3.1 hypothetical protein compare
BWI76_RS22815 +1.3 8.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS05005 +1.2 4.7 polynucleotide adenylyltransferase compare
BWI76_RS13245 +1.2 1.4 DNA-damage-inducible protein I compare
BWI76_RS12070 +1.1 2.3 hypothetical protein compare
BWI76_RS24915 +1.1 8.6 penicillin-binding protein activator compare
BWI76_RS22085 +1.1 5.7 L-valine transporter subunit YgaH compare
BWI76_RS13785 +1.1 3.3 ABC transporter permease compare
BWI76_RS20915 +1.1 7.7 peroxiredoxin compare
BWI76_RS16525 +1.1 4.9 cyclopropane-fatty-acyl-phospholipid synthase compare
BWI76_RS06785 +1.1 4.8 DNA-binding transcriptional repressor AcrR compare
BWI76_RS05180 +1.0 5.1 serine endoprotease DegQ compare
BWI76_RS15975 +1.0 2.0 hypothetical protein compare
BWI76_RS26125 +1.0 6.2 carboxypeptidase/penicillin-binding protein 1A compare
BWI76_RS24605 +1.0 7.4 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS09335 +1.0 2.2 baseplate assembly protein W compare
BWI76_RS23025 +1.0 1.0 cobalt ABC transporter substrate-binding protein CbiN compare
BWI76_RS00025 +1.0 1.4 hypothetical protein compare
BWI76_RS26580 +1.0 5.4 universal stress protein A compare
BWI76_RS17910 +1.0 4.3 hypothetical protein compare
BWI76_RS10345 +1.0 8.3 MFS transporter compare
BWI76_RS18605 +1.0 2.0 oxidoreductase molybdopterin-binding protein compare
BWI76_RS07995 +1.0 2.1 twin-arginine translocase subunit TatA compare
BWI76_RS01775 +1.0 1.7 hypothetical protein compare
BWI76_RS18335 +0.9 6.2 DNA-binding response regulator compare
BWI76_RS26095 +0.9 1.6 shikimate kinase compare
BWI76_RS17770 +0.9 2.2 isomerase/hydrolase compare
BWI76_RS22685 +0.9 5.5 hypothetical protein compare
BWI76_RS10350 +0.9 5.8 EamA family transporter compare
BWI76_RS01385 +0.9 2.1 potassium transporter compare
BWI76_RS25475 +0.9 6.4 TIGR02099 family protein compare
BWI76_RS07165 +0.9 2.9 hypothetical protein compare
BWI76_RS14075 +0.8 2.6 TetR family transcriptional regulator compare
BWI76_RS11125 +0.8 1.9 metal-dependent hydrolase compare
BWI76_RS10305 +0.8 4.6 transposase compare
BWI76_RS06520 +0.8 3.1 trigger factor compare
BWI76_RS25365 +0.8 6.4 serine endoprotease DegQ compare
BWI76_RS12170 +0.8 0.7 hypothetical protein compare
BWI76_RS08405 +0.8 2.2 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS11300 +0.8 1.4 cupin compare
BWI76_RS15070 +0.8 7.1 non-ribosomal peptide synthetase compare
BWI76_RS15080 +0.8 6.4 hypothetical protein compare
BWI76_RS22135 +0.8 3.3 transport-associated protein compare
BWI76_RS12495 +0.8 2.0 2-Cys peroxiredoxin compare
BWI76_RS18110 +0.8 3.5 transcriptional regulator HexR compare
BWI76_RS26745 +0.7 1.9 antibiotic biosynthesis monooxygenase compare
BWI76_RS21505 +0.7 1.4 hypothetical protein compare
BWI76_RS16445 +0.7 1.5 auxiliary transporter membrane fusion protein compare
BWI76_RS11430 +0.7 1.3 lipoprotein compare
BWI76_RS01170 +0.7 3.3 uroporphyrinogen-III C-methyltransferase compare
BWI76_RS08315 +0.7 2.6 K+-transporting ATPase subunit B compare
BWI76_RS26605 +0.7 4.9 16S rRNA (guanine(1516)-N(2))-methyltransferase compare
BWI76_RS21395 +0.7 2.3 DTW domain-containing protein compare
BWI76_RS26185 +0.7 2.8 thiosulfate sulfurtransferase compare
BWI76_RS26205 +0.7 4.0 glucose-1-phosphate adenylyltransferase compare
BWI76_RS07865 +0.7 2.0 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS17075 +0.7 4.2 3-deoxy-7-phosphoheptulonate synthase compare
BWI76_RS17765 +0.7 2.3 hypothetical protein compare
BWI76_RS22120 +0.7 5.9 glutamate--cysteine ligase compare
BWI76_RS16150 +0.7 1.5 IclR family transcriptional regulator compare
BWI76_RS12270 +0.7 2.0 hypothetical protein compare
BWI76_RS24330 +0.7 2.5 TIGR00156 family protein compare
BWI76_RS19600 +0.7 3.8 hypothetical protein compare
BWI76_RS19555 +0.7 4.2 Beta-glucoside phosphotransferase system, IIA/IIB/IIC components (from data) compare
BWI76_RS24580 +0.7 3.3 PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR compare
BWI76_RS13755 +0.7 0.8 hypothetical protein compare
BWI76_RS13775 +0.7 1.8 putative FMN-dependent luciferase-like monooxygenase compare
BWI76_RS11520 +0.7 1.3 hypothetical protein compare
BWI76_RS21490 +0.7 4.2 GGDEF domain-containing protein compare
BWI76_RS23655 +0.7 3.9 DeoR family transcriptional regulator compare
BWI76_RS11060 +0.7 2.0 septum formation inhibitor Maf compare
BWI76_RS15280 +0.7 3.1 sugar transporter compare
BWI76_RS08945 +0.7 2.8 catecholate siderophore receptor Fiu compare
BWI76_RS05790 +0.7 1.5 phage DNA-binding protein compare
BWI76_RS21535 +0.7 2.6 inner membrane protein YpjD compare
BWI76_RS00240 +0.6 1.9 FMN-binding protein MioC compare
BWI76_RS09100 +0.6 3.6 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS02605 +0.6 2.5 esterase compare
BWI76_RS11635 +0.6 1.7 ABC transporter compare
BWI76_RS15035 +0.6 1.8 metal ABC transporter permease compare
BWI76_RS24585 +0.6 1.7 glycerol dehydrogenase compare
BWI76_RS10900 +0.6 2.0 putative oxidoreductase compare
BWI76_RS22505 +0.6 2.8 3-oxoacyl-ACP reductase compare
BWI76_RS17370 +0.6 1.3 nitrate transporter NasD compare
BWI76_RS23680 +0.6 2.1 ribokinase compare
BWI76_RS22690 +0.6 2.0 adenylyl-sulfate kinase compare
BWI76_RS19605 +0.6 2.7 CidB/LrgB family autolysis modulator compare
BWI76_RS17860 +0.6 1.8 YoaH family protein compare
BWI76_RS20230 +0.6 1.4 hypothetical protein compare
BWI76_RS22350 +0.6 2.1 hydrogenase nickel incorporation protein HypB compare
BWI76_RS22375 +0.6 2.7 pectin acetylesterase compare
BWI76_RS15925 +0.6 3.2 dimethyl sulfoxide reductase subunit A compare
BWI76_RS18090 +0.6 2.4 phosphoribosylglycinamide formyltransferase 2 compare
BWI76_RS06915 +0.6 1.4 membrane protein compare
BWI76_RS25545 +0.6 0.9 hypothetical protein compare
BWI76_RS08875 +0.6 3.6 multidrug ABC transporter ATP-binding protein compare
BWI76_RS26215 +0.6 3.2 glycogen-branching enzyme compare
BWI76_RS16970 +0.6 2.0 murein L,D-transpeptidase compare
BWI76_RS17805 +0.6 1.1 membrane protein compare
BWI76_RS20455 +0.6 3.2 multifunctional fatty acid oxidation complex subunit alpha compare
BWI76_RS06370 +0.6 1.6 phosphatidylglycerophosphatase A compare
BWI76_RS15075 +0.6 3.2 non-ribosomal peptide synthase compare
BWI76_RS21810 +0.6 1.3 universal stress protein compare
BWI76_RS08715 +0.6 3.6 acyl-CoA thioesterase compare
BWI76_RS02310 +0.6 3.1 transcriptional regulator compare
BWI76_RS06870 +0.6 3.9 aminoacyl-tRNA deacylase compare
BWI76_RS04150 +0.6 2.3 lipoate--protein ligase A compare
BWI76_RS06585 +0.6 4.0 multidrug ABC transporter permease/ATP-binding protein compare
BWI76_RS24485 +0.6 1.4 bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase compare
BWI76_RS19785 +0.6 2.2 microcin C ABC transporter permease YejB compare
BWI76_RS16455 +0.6 1.2 superoxide dismutase compare
BWI76_RS21120 +0.6 2.2 enhanced serine sensitivity protein SseB compare
BWI76_RS00940 +0.6 2.6 transcriptional regulator HdfR compare
BWI76_RS00715 +0.6 1.3 two-component sensor histidine kinase compare
BWI76_RS06635 +0.6 1.3 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS18915 +0.6 2.2 NAD(P)-dependent oxidoreductase compare
BWI76_RS22640 +0.6 1.7 hypothetical protein compare
BWI76_RS10760 +0.6 1.8 nitroreductase family protein compare
BWI76_RS18420 +0.6 2.8 DNA (cytosine-5-)-methyltransferase compare
BWI76_RS07790 +0.5 1.6 plasmid stabilization protein compare
BWI76_RS16965 +0.5 1.8 murein lipoprotein compare
BWI76_RS24600 +0.5 2.7 dihydroxyacetone kinase compare
BWI76_RS25660 +0.5 1.4 hypothetical protein compare
BWI76_RS03040 +0.5 1.9 leucyl aminopeptidase compare
BWI76_RS12305 +0.5 2.2 hypothetical protein compare
BWI76_RS15800 +0.5 1.8 transcriptional regulator compare
BWI76_RS27515 +0.5 3.9 glycerol kinase compare
BWI76_RS17920 +0.5 1.3 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS23300 +0.5 3.5 YgdI/YgdR family lipoprotein compare
BWI76_RS04210 +0.5 2.1 hypothetical protein compare
BWI76_RS23705 +0.5 1.0 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS18235 +0.5 2.0 trehalose-phosphatase compare
BWI76_RS20380 +0.5 0.9 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS17080 +0.5 3.3 hypothetical protein compare
BWI76_RS18080 +0.5 2.1 protein YebE compare
BWI76_RS02745 +0.5 0.9 hypothetical protein compare
BWI76_RS10945 +0.5 1.8 SecY/SecA suppressor protein compare
BWI76_RS18540 +0.5 2.8 signal transduction protein PmrD compare
BWI76_RS04850 +0.5 1.5 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS13265 +0.5 1.8 hypothetical protein compare
BWI76_RS19775 +0.5 1.6 phage resistance protein compare
BWI76_RS24295 +0.5 1.9 AraC family transcriptional regulator compare
BWI76_RS09110 +0.5 1.8 glutathione ABC transporter permease GsiD compare
BWI76_RS11980 +0.5 1.3 DeoR family transcriptional regulator compare
BWI76_RS22205 +0.5 1.1 cation ABC transporter ATP-binding protein compare
BWI76_RS24525 +0.5 2.3 urease accessory protein UreG compare
BWI76_RS19190 +0.5 2.2 oligopeptide/dipeptide ABC transporter ATPase compare
BWI76_RS24945 +0.5 0.8 glutamine amidotransferase compare
BWI76_RS04995 +0.5 2.4 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
BWI76_RS04605 +0.5 1.0 thiamine ABC transporter ATP-binding protein compare
BWI76_RS10745 +0.5 0.8 hypothetical protein compare
BWI76_RS22210 +0.5 2.5 murein transglycosylase B compare
BWI76_RS02625 +0.5 1.5 PTS ascorbate transporter subunit IIB compare
BWI76_RS11155 +0.5 1.4 penicillin-binding protein activator LpoB compare
BWI76_RS12575 +0.5 1.3 FAD-dependent oxidoreductase compare
BWI76_RS05945 +0.5 1.8 amino acid ABC transporter permease compare
BWI76_RS24270 +0.5 1.6 membrane protein compare
BWI76_RS10400 +0.5 1.9 hypothetical protein compare
BWI76_RS16370 +0.5 2.7 electron transport complex subunit D compare
BWI76_RS24825 +0.5 0.6 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS19450 +0.5 2.1 hypothetical protein compare
BWI76_RS05950 +0.5 1.1 polar amino acid ABC transporter inner membrane subunit compare
BWI76_RS09090 +0.5 3.0 beta-aspartyl-peptidase compare
BWI76_RS01835 +0.5 2.1 chemotaxis protein CheW compare
BWI76_RS13450 +0.5 1.8 acyl-CoA thioesterase compare
BWI76_RS01585 +0.5 1.7 transcriptional regulator compare
BWI76_RS00120 +0.5 1.6 glucosamine-6-phosphate deaminase compare
BWI76_RS14845 +0.5 1.0 hypothetical protein compare
BWI76_RS10560 +0.5 1.6 gamma-glutamyltransferase compare
BWI76_RS12625 +0.5 3.1 isoflavone reductase compare
BWI76_RS08910 +0.5 1.5 transketolase domain-containing protein compare
BWI76_RS10735 +0.5 1.5 hypothetical protein compare


Specific Phenotypes

For 12 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms