Experiment set8IT073 for Herbaspirillum seropedicae SmR1

Compare to:

Vogels_fungal_media; pH 5.5

200 most important genes:

  gene name fitness t score description  
HSERO_RS16480 -9.2 -5.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
HSERO_RS07160 -8.2 -5.0 phospho-2-dehydro-3-deoxyheptonate aldolase compare
HSERO_RS08650 -7.9 -9.4 acetolactate synthase compare
HSERO_RS02330 -7.2 -8.4 aspartate carbamoyltransferase compare
HSERO_RS01935 -7.1 -5.4 3-dehydroquinate dehydratase compare
HSERO_RS15565 -6.9 -4.8 sulfate adenylyltransferase subunit 2 compare
HSERO_RS18425 -6.9 -4.4 prephenate dehydrogenase compare
HSERO_RS19445 -6.6 -9.0 anthranilate phosphoribosyltransferase compare
HSERO_RS20310 -6.6 -4.3 phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) (from data) compare
HSERO_RS08660 -6.5 -6.0 ketol-acid reductoisomerase compare
HSERO_RS15555 -6.4 -5.1 oxidoreductase compare
HSERO_RS19805 -6.3 -4.4 glycosyl transferase compare
HSERO_RS16440 -6.3 -6.9 O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) (from data) compare
HSERO_RS16505 -6.2 -6.9 3-isopropylmalate dehydratase small subunit compare
HSERO_RS16515 -6.1 -9.6 isopropylmalate isomerase compare
HSERO_RS20345 -6.0 -5.9 histidinol dehydrogenase compare
HSERO_RS18430 -5.9 -5.7 chorismate mutase compare
HSERO_RS02340 -5.8 -20.4 dihydroorotase compare
HSERO_RS19595 -5.7 -8.8 glutamate synthase compare
HSERO_RS00455 -5.7 -11.7 homoserine O-acetyltransferase compare
HSERO_RS20315 -5.7 -5.2 imidazole glycerol phosphate synthase compare
HSERO_RS02650 -5.6 -8.9 dihydroxy-acid dehydratase compare
HSERO_RS18990 -5.6 -3.9 pyrroline-5-carboxylate reductase compare
HSERO_RS19435 -5.4 -7.6 anthranilate synthase subunit I compare
HSERO_RS20330 -5.4 -5.8 imidazoleglycerol-phosphate dehydratase compare
HSERO_RS17185 -5.3 -7.3 2-isopropylmalate synthase compare
HSERO_RS19510 -5.3 -9.6 threonine dehydratase compare
HSERO_RS11070 -5.1 -6.7 nicotinate-nucleotide pyrophosphorylase compare
HSERO_RS16500 -5.0 -5.1 3-isopropylmalate dehydrogenase compare
HSERO_RS02140 -5.0 -1.7 thiamine-phosphate synthase compare
HSERO_RS15570 -5.0 -6.5 sulfate adenylyltransferase compare
HSERO_RS11065 -5.0 -4.4 quinolinate synthetase compare
HSERO_RS20350 -4.9 -4.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
HSERO_RS01815 -4.8 -4.7 gamma-glutamyl kinase compare
HSERO_RS13660 -4.7 -2.2 membrane protein compare
HSERO_RS02325 -4.7 -7.6 uracil phosphoribosyltransferase compare
HSERO_RS20920 -4.6 -5.2 3-dehydroquinate synthase compare
HSERO_RS00430 -4.5 -2.9 glutamate--cysteine ligase compare
HSERO_RS02160 -4.5 -3.3 DNA-dependent helicase compare
HSERO_RS16475 -4.4 -2.1 tryptophan synthase subunit alpha compare
HSERO_RS20325 -4.4 -5.0 IGP synthase, amidotransferase subunit (EC 4.3.2.10) (from data) compare
HSERO_RS19450 -4.4 -4.6 indole-3-glycerol-phosphate synthase compare
HSERO_RS20320 -4.3 -4.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
HSERO_RS23945 -4.2 -2.8 cobyric acid synthase CobQ compare
HSERO_RS15560 -4.1 -2.7 phosphoadenosine phosphosulfate reductase compare
HSERO_RS13255 -4.1 -3.9 cobyrinic acid a,c-diamide synthase compare
HSERO_RS15575 -4.1 -1.4 uroporphyrin-III C-methyltransferase compare
HSERO_RS16825 -4.0 -2.3 NADP-dependent malic enzyme oxidoreductase compare
HSERO_RS17110 -4.0 -3.3 ribonuclease H compare
HSERO_RS04340 -3.8 -5.6 gamma-glutamyl ligase compare
HSERO_RS13305 -3.8 -6.8 magnesium chelatase compare
HSERO_RS04330 -3.8 -6.7 ATP-dependent exonuclease compare
HSERO_RS02125 -3.8 -8.2 thiamine biosynthesis protein ThiS compare
HSERO_RS20985 -3.5 -1.2 serine acetyltransferase compare
HSERO_RS18455 -3.5 -2.2 phosphoglycolate phosphatase compare
HSERO_RS04325 -3.5 -10.0 helicase I compare
HSERO_RS13645 -3.4 -5.3 membrane protein compare
HSERO_RS11085 -3.4 -7.3 L-aspartate oxidase compare
HSERO_RS13310 -3.3 -10.2 cobaltochelatase compare
HSERO_RS08655 -3.3 -2.0 acetolactate synthase compare
HSERO_RS09050 -3.3 -3.6 2-aminoadipate aminotransferase compare
HSERO_RS15070 -3.3 -1.1 ribosomal large subunit pseudouridine synthase D compare
HSERO_RS13295 -3.3 -4.0 membrane protein compare
HSERO_RS00835 -3.2 -3.5 molybdopterin biosynthesis protein MoeB compare
HSERO_RS17980 -3.2 -2.1 GTP-binding protein compare
HSERO_RS15585 -3.2 -8.0 cobalamin biosynthesis protein CbiX compare
HSERO_RS16840 -3.2 -6.0 competence damage-inducible protein A compare
HSERO_RS10460 -3.1 -1.3 homoserine dehydrogenase compare
HSERO_RS09775 -3.1 -2.1 cobalamin synthase compare
HSERO_RS02130 -3.1 -4.3 thiazole synthase compare
HSERO_RS13280 -3.1 -3.2 precorrin-4 C11-methyltransferase compare
HSERO_RS15550 -3.0 -3.4 sulfite reductase compare
HSERO_RS13260 -3.0 -3.7 cobinamide adenolsyltransferase compare
HSERO_RS13285 -2.9 -2.3 precorrin-2 C20-methyltransferase compare
HSERO_RS02260 -2.9 -3.8 DNA polymerase I compare
HSERO_RS16050 -2.8 -2.2 peptidase S41 compare
HSERO_RS02120 -2.8 -8.4 phosphomethylpyrimidine synthase ThiC compare
HSERO_RS19785 -2.8 -4.7 sensor histidine kinase compare
HSERO_RS02090 -2.8 -1.8 Holliday junction DNA helicase RuvA compare
HSERO_RS05515 -2.8 -0.9 glucose-6-phosphate isomerase compare
HSERO_RS08115 -2.7 -1.8 acyl-CoA-binding protein compare
HSERO_RS16075 -2.7 -2.6 coproporphyrinogen III oxidase compare
HSERO_RS01990 -2.7 -4.1 shikimate 5-dehydrogenase compare
HSERO_RS13650 -2.7 -5.9 high-affinity Fe2+/Pb2+ permease compare
HSERO_RS08605 -2.6 -2.1 Hsp33 chaperonin compare
HSERO_RS03085 -2.6 -2.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
HSERO_RS13655 -2.5 -4.8 hypothetical protein compare
HSERO_RS18010 -2.5 -1.1 pseudouridine synthase compare
HSERO_RS10815 -2.5 -4.1 chromosome segregation protein SMC compare
HSERO_RS09770 -2.5 -2.5 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
HSERO_RS16470 -2.4 -1.9 tryptophan synthase subunit alpha compare
HSERO_RS21150 -2.4 -5.0 aldolase compare
HSERO_RS21640 -2.4 -3.2 recombinase RdgC compare
HSERO_RS13315 -2.3 -1.3 ferredoxin compare
HSERO_RS10455 -2.3 -8.6 aminotransferase compare
HSERO_RS21740 -2.3 -7.6 methionine synthase compare
HSERO_RS16885 -2.3 -0.7 magnesium-transporting ATPase compare
HSERO_RS07970 -2.3 -2.1 formyltetrahydrofolate deformylase compare
HSERO_RS05910 -2.3 -2.1 phosphoribosylglycinamide formyltransferase compare
HSERO_RS15040 -2.3 -6.3 poly(R)-hydroxyalkanoic acid synthase compare
HSERO_RS09730 -2.3 -3.8 glycoside hydrolase family 43 compare
HSERO_RS15835 -2.3 -1.3 aspartate aminotransferase compare
HSERO_RS13270 -2.3 -5.5 bifunctional precorrin-3 methyltransferase/precorrin-6x reductase oxidoreductase compare
HSERO_RS13265 -2.2 -2.9 G3E family GTPase compare
HSERO_RS20235 -2.2 -1.4 cytochrome C compare
HSERO_RS21760 -2.2 -4.6 DSBA oxidoreductase compare
HSERO_RS12920 -2.1 -0.9 trigger factor compare
HSERO_RS20600 -2.1 -5.0 transcription regulator protein compare
HSERO_RS07755 -2.1 -3.7 glutamate racemase compare
HSERO_RS20355 -2.1 -2.3 UDP-N-acetylglucosamine 1-carboxyvinyltransferase compare
HSERO_RS17105 -2.1 -2.1 DNA polymerase III subunit epsilon compare
HSERO_RS02135 -2.1 -5.0 phosphomethylpyrimidine kinase compare
HSERO_RS13240 -2.1 -2.9 cobalamin biosynthesis protein CobD compare
HSERO_RS13320 -2.0 -2.9 membrane protein compare
HSERO_RS21375 -2.0 -1.5 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase compare
HSERO_RS10395 -2.0 -2.1 phosphate transport regulator compare
HSERO_RS04335 -2.0 -1.6 sodium:proton antiporter compare
HSERO_RS01870 -2.0 -4.9 ABC transporter permease compare
HSERO_RS09725 -1.9 -6.4 ABC transporter compare
HSERO_RS03270 -1.8 -5.0 protein RecA compare
HSERO_RS19630 -1.8 -0.6 AMP nucleosidase compare
HSERO_RS05970 -1.8 -1.7 ABC transporter compare
HSERO_RS06165 -1.8 -6.1 ATP-dependent DNA helicase RecG compare
HSERO_RS21765 -1.8 -4.6 cell division protein compare
HSERO_RS19490 -1.8 -1.5 hypothetical protein compare
HSERO_RS16420 -1.8 -4.1 phosphoesterase compare
HSERO_RS17120 -1.7 -4.0 hydroxyacylglutathione hydrolase compare
HSERO_RS08640 -1.6 -1.5 hypothetical protein compare
HSERO_RS17880 -1.6 -3.1 membrane protein compare
HSERO_RS00965 -1.6 -1.0 trehalose-phosphatase compare
HSERO_RS16070 -1.6 -1.6 cytochrome biogenesis protein compare
HSERO_RS02365 -1.6 -4.5 hypothetical protein compare
HSERO_RS00080 -1.6 -5.3 histidine kinase compare
HSERO_RS05460 -1.6 -4.6 LacI family transcription regulator compare
HSERO_RS00975 -1.5 -4.7 alpha,alpha-trehalose-phosphate synthase compare
HSERO_RS09660 -1.5 -2.2 ribonuclease III compare
HSERO_RS19995 -1.5 -0.7 3-oxoadipate CoA-transferase subunit B compare
HSERO_RS09155 -1.5 -5.8 DNA topoisomerase IV subunit B compare
HSERO_RS22455 -1.5 -5.5 AraC family transcriptional regulator compare
HSERO_RS09720 -1.4 -3.0 membrane protein compare
HSERO_RS20370 -1.4 -3.9 ABC transporter ATP-binding protein compare
HSERO_RS14855 -1.4 -7.1 helicase compare
HSERO_RS15695 -1.4 -3.9 sulfurtransferase compare
HSERO_RS14840 -1.4 -3.1 protein-L-isoaspartate O-methyltransferase compare
HSERO_RS23640 -1.3 -2.0 Ni/Fe hydrogenase compare
HSERO_RS22720 -1.3 -5.3 histidine kinase compare
HSERO_RS22460 -1.3 -3.1 xylose ABC transporter substrate-binding protein compare
HSERO_RS20365 -1.3 -2.8 metal-dependent hydrolase compare
HSERO_RS22040 -1.3 -2.0 CDP-glucose 4,6-dehydratase compare
HSERO_RS04135 -1.3 -1.4 amidohydrolase compare
HSERO_RS05630 -1.3 -1.4 AsnC family transcriptional regulator compare
HSERO_RS19575 -1.3 -1.4 50S ribosomal protein L25 compare
HSERO_RS22175 -1.3 -1.1 hypothetical protein compare
HSERO_RS02145 -1.3 -1.2 ferritin compare
HSERO_RS05190 -1.3 -6.0 sugar ABC transporter substrate-binding protein compare
HSERO_RS10400 -1.2 -5.2 inorganic phosphate transporter compare
HSERO_RS03880 -1.2 -1.2 hypothetical protein compare
HSERO_RS09455 -1.2 -2.0 NAD synthetase compare
HSERO_RS09145 -1.2 -3.3 DNA topoisomerase IV subunit A compare
HSERO_RS13230 -1.2 -0.9 cobyric acid synthase compare
HSERO_RS01720 -1.2 -2.1 membrane protein compare
HSERO_RS14670 -1.2 -6.3 phosphoenolpyruvate carboxylase compare
HSERO_RS05195 -1.2 -4.7 xylose ABC transporter ATP-binding protein compare
HSERO_RS11465 -1.2 -1.6 sodium:proton antiporter compare
HSERO_RS09745 -1.2 -1.0 chemotaxis protein CheY compare
HSERO_RS09690 -1.2 -4.6 excinuclease ABC subunit C compare
HSERO_RS19590 -1.2 -0.5 dihydropyrimidine dehydrogenase subunit A compare
HSERO_RS10020 -1.2 -1.4 flippase compare
HSERO_RS12975 -1.2 -0.9 phytoene synthase compare
HSERO_RS11185 -1.1 -1.8 amino acid dehydrogenase compare
HSERO_RS11090 -1.1 -3.7 phosphoribosylglycinamide formyltransferase compare
HSERO_RS20260 -1.1 -2.1 2-alkenal reductase compare
HSERO_RS22730 -1.1 -3.6 sugar ABC transporter substrate-binding protein compare
HSERO_RS20820 -1.1 -0.8 ABC transporter ATP-binding protein compare
HSERO_RS15360 -1.1 -2.6 regulator of disulfide bond formation redox protein compare
HSERO_RS10405 -1.1 -1.9 phosphate starvation protein PhoH compare
HSERO_RS02215 -1.1 -0.3 D-arabinitol 4-dehydrogenase compare
HSERO_RS13960 -1.1 -2.3 hypothetical protein compare
HSERO_RS09735 -1.1 -1.6 hypothetical protein compare
HSERO_RS21340 -1.1 -3.0 septum formation inhibitor protein compare
HSERO_RS13275 -1.1 -1.1 cobalamin biosynthesis protein CbiG compare
HSERO_RS09500 -1.1 -4.0 cell division protein FtsK compare
HSERO_RS14835 -1.1 -3.1 peptidase M23 compare
HSERO_RS07600 -1.0 -2.8 threonine-phosphate decarboxylase compare
HSERO_RS05325 -1.0 -1.4 ribose ABC transporter permease compare
HSERO_RS10410 -1.0 -1.5 alkyl hydroperoxide reductase compare
HSERO_RS11830 -1.0 -1.3 hypothetical protein compare
HSERO_RS02575 -1.0 -2.9 diguanylate cyclase compare
HSERO_RS03780 -1.0 -2.3 type VI secretion protein compare
HSERO_RS00315 -1.0 -1.8 amino acid ABC transporter permease compare
HSERO_RS07470 -1.0 -1.1 ketosteroid isomerase compare
HSERO_RS08150 -1.0 -3.5 phasin family protein compare
HSERO_RS21450 -1.0 -1.5 lipid A biosynthesis acyltransferase compare
HSERO_RS10805 -1.0 -1.3 succinyldiaminopimelate aminotransferase compare
HSERO_RS06015 -1.0 -1.3 hisitidine kinase compare
HSERO_RS09220 -1.0 -1.7 hypothetical protein compare
HSERO_RS10850 -1.0 -1.3 ABC transporter compare
HSERO_RS04860 -1.0 -0.8 sugar ABC transporter permease compare
HSERO_RS18525 -0.9 -2.2 hypothetical protein compare
HSERO_RS03385 -0.9 -2.9 flavin reductase compare


Specific Phenotypes

For 1 genes in this experiment