Experiment set8IT071 for Phaeobacter inhibens DSM 17395

Compare to:

L-Tryptophan nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c23470 +8.1 19.4 transcriptional regulator, MarR family compare
PGA1_c23480 +3.3 5.4 putative D-beta-hydroxybutyrate dehydrogenase conserved
PGA1_c33890 +3.3 23.3 thioesterase-like protein compare
PGA1_c31170 +3.0 14.5 phosphotyrosine protein phosphatase-like protein compare
PGA1_c21890 +2.5 18.8 transcriptional regulator, LysR family compare
PGA1_c07860 +2.4 20.7 alpha-glucosides-binding periplasmic protein AglE compare
PGA1_c07880 +2.4 18.3 alpha-glucoside transport system permease protein AglG compare
PGA1_c07870 +2.3 16.4 alpha-glucoside transport system permease protein AglF compare
PGA1_c07900 +2.3 17.9 alpha-glucoside transport ATP-binding protein AglK compare
PGA1_c30390 +1.5 11.2 putative polyphosphate kinase compare
PGA1_c07890 +1.5 8.5 cytoplasmic trehalase (AlgA) (from data) compare
PGA1_c29060 +1.3 3.7 HTH-type transcriptional regulator PecS compare
PGA1_c10470 +1.2 2.8 hypothetical protein compare
PGA1_65p00280 +1.2 3.8 Protein of unknown function (DUF2793)./Domain of unknown function (DUF3476). compare
PGA1_c22240 +1.1 2.9 hypothetical protein compare
PGA1_c02850 +1.1 0.8 peptidase S49-like protein compare
PGA1_65p00450 +1.0 4.4 UDP-glucose 6-dehydrogenase Ugd compare
PGA1_c03400 +1.0 8.0 acetyl-CoA:acetyl-CoA C-acetyltransferase / acetyl-CoA:propanoyl-CoA 2-C-acetyltransferase (EC 2.3.1.9; EC 2.3.1.16) (from data) compare
PGA1_c21900 +1.0 2.9 Uncharacterized conserved small protein compare
PGA1_c06590 +0.9 3.0 putative transcriptional regulator, AsnC family compare
PGA1_c08890 +0.9 4.3 putative capsule polysaccharide export outer membrane protein compare
PGA1_c24310 +0.9 5.1 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c33870 +0.9 5.5 putative HTH-type transcriptional regulator GntR compare
PGA1_c09900 +0.9 5.8 malate synthase GlcB compare
PGA1_c15050 +0.8 2.4 Uncharacterized enzyme involved in pigment biosynthesis compare
PGA1_c00680 +0.8 1.4 transcriptional regulator, arsR family compare
PGA1_c09990 +0.8 3.4 Uncharacterized protein conserved in bacteria compare
PGA1_c08900 +0.8 4.9 putative capsule polysaccharide export protein KpsS compare
PGA1_c17410 +0.8 5.3 MFS type transporter compare
PGA1_c08590 +0.8 5.2 heme NO binding domain-containing protein compare
PGA1_c31370 +0.8 4.8 homoprotocatechuate degradative operon repressor compare
PGA1_c30580 +0.7 2.0 TIGR02300 family protein compare
PGA1_c05490 +0.7 3.0 ureidoglycolate hydrolase AllA compare
PGA1_65p00180 +0.7 1.8 putative sugar transferase compare
PGA1_c01160 +0.7 6.1 sensor protein ChvG compare
PGA1_65p00310 +0.7 2.4 GDP-mannose 4,6-dehydratase Gmd compare
PGA1_c33900 +0.7 4.7 TRAP transporter, subunit DctM compare
PGA1_c08990 +0.7 2.4 hypothetical protein compare
PGA1_c03390 +0.7 5.1 acetoacetyl-CoA reductase PhaB compare
PGA1_c24320 +0.7 5.2 putative capsule polysaccharide export inner-membrane protein compare
PGA1_65p00350 +0.7 4.6 hemolysin-like protein compare
PGA1_c14710 +0.7 1.9 hypoxanthine-guanine phosphoribosyltransferase Hpt compare
PGA1_c09090 +0.7 1.7 thiamine biosynthesis protein ThiS compare
PGA1_c09050 +0.7 3.1 thiamine-phosphate pyrophosphorylase ThiE compare
PGA1_c00610 +0.7 1.3 acetyltransferase, GNAT family compare
PGA1_c34890 +0.7 5.0 putative histidine-containing phosphotransfer protein compare
PGA1_c15040 +0.6 3.0 Uncharacterized conserved protein compare
PGA1_c34510 +0.6 4.4 hypothetical protein compare
PGA1_c01960 +0.6 2.0 putative hydrolase compare
PGA1_c03530 +0.6 2.5 pyridoxamine 5'-phosphate oxidase-like protein compare
PGA1_c26300 +0.6 2.3 ABC transporter, ATP-binding protein compare
PGA1_c08550 +0.6 2.2 Protein of unknown function (DUF3572). compare
PGA1_c35770 +0.6 1.0 putative flagella basal body P-ring formation protein FlgA compare
PGA1_c03880 +0.6 5.7 putative transcriptional activator protein RaiR compare
PGA1_c18580 +0.6 2.1 hypothetical protein compare
PGA1_c31760 +0.6 2.0 Uncharacterized protein conserved in bacteria compare
PGA1_c15870 +0.6 4.1 transcriptional regulator, AraC family compare
PGA1_c34880 +0.6 5.0 putative response regulator compare
PGA1_c20600 +0.6 2.4 Protein of unknown function (DUF1826). compare
PGA1_c08600 +0.6 4.3 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c01150 +0.6 4.7 transcriptional regulatory protein ChvI compare
PGA1_c08880 +0.6 4.4 capsule polysaccharide export protein KpsC compare
PGA1_c34470 +0.6 2.5 UDP-glucose 4-epimerase ExoB compare
PGA1_262p02230 +0.6 1.3 zinc uptake regulation protein zur-like protein compare
PGA1_c07110 +0.6 4.2 putative sodium/alanine symporter compare
PGA1_262p02170 +0.6 1.8 putative chemoreceptor glutamine deamidase CheD compare
PGA1_c04700 +0.6 3.6 hypothetical protein compare
PGA1_c14720 +0.6 1.2 Oligoketide cyclase/lipid transport protein compare
PGA1_c28700 +0.5 2.1 LamB/YcsF family protein compare
PGA1_c23490 +0.5 4.2 NADH:flavin oxidoreductase/NADH oxidase, containing FAD binding domain compare
PGA1_c33190 +0.5 3.3 putative anti-sigma-B factor antagonist compare
PGA1_262p00490 +0.5 1.8 hypothetical protein compare
PGA1_c17870 +0.5 1.4 hypothetical protein compare
PGA1_c06200 +0.5 2.3 probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B compare
PGA1_c20910 +0.5 2.0 PHA synthesis repressor protein PhaR compare
PGA1_c35940 +0.5 4.1 Core-2/I-Branching enzyme. compare
PGA1_c33550 +0.5 3.5 putative fatty acid desaturase compare
PGA1_c15310 +0.5 1.9 multidrug transporter EmrE compare
PGA1_c27910 +0.5 2.8 N-acetylglucosamine kinase (EC 2.7.1.59) (from data) compare
PGA1_c23590 +0.5 1.9 hypothetical protein compare
PGA1_c13490 +0.5 3.6 putative cytochrome P450 compare
PGA1_c27900 +0.5 2.0 ligand-binding UTRA domain-containing protein compare
PGA1_262p01510 +0.5 1.5 sarcosine oxidase, delta subunit compare
PGA1_c03500 +0.5 1.9 putative cell division ATP-binding protein FtsE compare
PGA1_c11480 +0.5 1.9 Uncharacterized conserved protein compare
PGA1_c32170 +0.5 2.4 hypothetical protein compare
PGA1_c11390 +0.5 1.7 putative ATP-dependent RNA helicase RhlE compare
PGA1_c12920 +0.5 1.6 nitrilotriacetate monooxygenase component B-like protein compare
PGA1_c23970 +0.5 1.9 hypothetical protein compare
PGA1_c19170 +0.5 2.9 sarcosine oxidase subunit beta compare
PGA1_c11280 +0.5 2.9 Putative hemolysin compare
PGA1_262p01060 +0.5 1.6 Protein of unknown function (DUF995). compare
PGA1_c25190 +0.5 2.5 hypothetical protein compare
PGA1_262p01270 +0.5 1.7 Uncharacterized conserved protein compare
PGA1_c13540 +0.5 3.4 Uncharacterized protein conserved in bacteria compare
PGA1_c15290 +0.5 1.5 Lactoylglutathione lyase and related lyases compare
PGA1_c31740 +0.5 2.9 hypothetical protein compare
PGA1_c11620 +0.5 1.8 Uncharacterized conserved protein compare
PGA1_c17350 +0.5 2.5 3-hydroxyisobutyryl-CoA hydrolase (EC 3.1.2.4) (from data) compare
PGA1_c14960 +0.5 1.8 putative transcriptional regulator compare
PGA1_c04950 +0.5 0.8 GTP-dependent nucleic acid-binding protein EngD compare
PGA1_c33920 +0.5 2.7 TRAP transporter, subunit DctP compare
PGA1_c16110 +0.4 1.7 putative ion channel compare
PGA1_c34110 +0.4 3.3 branched-chain-amino-acid aminotransferase IlvE compare
PGA1_c35950 +0.4 3.8 hypothetical protein compare
PGA1_c31730 +0.4 2.8 hypothetical protein compare
PGA1_c32180 +0.4 2.5 hypothetical protein compare
PGA1_c20140 +0.4 2.6 putative arginine-tRNA-protein transferase compare
PGA1_c31880 +0.4 4.0 signal transduction histidine kinase compare
PGA1_c07980 +0.4 2.0 metallo beta-lactamase domain-containing protein compare
PGA1_c05600 +0.4 2.3 queuosine biosynthesis protein QueC compare
PGA1_c05730 +0.4 0.9 putative methylated-DNA--protein-cysteine methyltransferase compare
PGA1_c10580 +0.4 2.4 ribonuclease J 1 compare
PGA1_c23420 +0.4 3.6 Domain of unknown function. compare
PGA1_c33050 +0.4 2.6 hypothetical protein compare
PGA1_c07650 +0.4 3.1 hypothetical protein compare
PGA1_78p00270 +0.4 1.1 lipoyl synthase LipA compare
PGA1_262p01220 +0.4 2.1 nitric oxide reductase subunit B compare
PGA1_c34460 +0.4 2.7 hypothetical protein compare
PGA1_c24750 +0.4 1.8 uncharacterized protein, YfiH family compare
PGA1_c10800 +0.4 1.4 Uncharacterized protein conserved in bacteria (DUF2199). compare
PGA1_c04900 +0.4 1.3 peptidyl-tRNA hydrolase Pth compare
PGA1_c29760 +0.4 1.5 iojap-like ribosome-associated protein compare
PGA1_c29520 +0.4 3.2 beta-1,6-N-acetylglucosaminyltransferase-like protein compare
PGA1_c02840 +0.4 3.2 inner membrane transport permease compare
PGA1_c02420 +0.4 1.6 V8-like Glu-specific endopeptidase compare
PGA1_c32610 +0.4 2.4 high-affinity branched-chain amino acid transport permease protein compare
PGA1_78p00340 +0.4 1.1 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
PGA1_c36060 +0.4 2.7 putative NAD dependent epimerase compare
PGA1_c06280 +0.4 0.6 cytochrome c oxidase assembly protein CtaG compare
PGA1_c14910 +0.4 1.4 hypothetical protein compare
PGA1_c12740 +0.4 1.8 Predicted transporter component compare
PGA1_c06630 +0.4 1.2 hypothetical protein compare
PGA1_65p00430 +0.4 1.7 putative glycosyl transferase compare
PGA1_c23620 +0.4 2.2 Predicted membrane protein compare
PGA1_c29260 +0.4 1.3 ribosomal RNA small subunit methyltransferase D compare
PGA1_c10030 +0.4 2.7 NAD(P) transhydrogenase subunit alpha compare
PGA1_c05200 +0.4 2.5 putative ABC transporter, inner membrane component compare
PGA1_c35600 +0.4 2.2 flagellar P-ring protein FlgI compare
PGA1_262p00460 +0.4 1.6 transcriptional regulator, MerR family compare
PGA1_c31210 +0.4 1.6 Protein of unknown function (DUF2948). compare
PGA1_c33010 +0.4 1.0 glycosyltransferase-like protein compare
PGA1_c19950 +0.4 1.7 protein MazG compare
PGA1_c03250 +0.4 1.7 molybdopterin-guanine dinucleotide biosynthesis protein B compare
PGA1_c19160 +0.4 2.3 sarcosine oxidase 2 subunit delta compare
PGA1_c06960 +0.4 1.0 Uncharacterized protein conserved in bacteria compare
PGA1_c15180 +0.4 1.9 Predicted thioesterase compare
PGA1_c06450 +0.4 1.9 short-chain dehydrogenases/reductase domain-containing protein compare
PGA1_65p00260 +0.4 1.7 putative metallopeptidase compare
PGA1_c27170 +0.4 2.6 TRAP transporter, subunit DctP compare
PGA1_c08755 +0.4 1.7 sarcosine oxidase subunit delta compare
PGA1_c20230 +0.4 2.2 hypothetical protein compare
PGA1_c29020 +0.4 1.8 hypothetical protein compare
PGA1_78p00280 +0.4 1.1 putative sodium/alanine symporter compare
PGA1_262p00810 +0.4 1.6 putative flavoprotein, HFCD family compare
PGA1_c25000 +0.4 1.6 Uncharacterized conserved protein compare
PGA1_c10590 +0.4 0.7 putative ATP-dependent RNA helicase RhlE compare
PGA1_c10020 +0.4 1.3 Putative protein-S-isoprenylcysteine methyltransferase compare
PGA1_c27140 +0.4 2.1 putative N-formylglutamate amidohydrolase compare
PGA1_c16360 +0.3 1.1 putative transriptional regulator, AsnC family compare
PGA1_c21870 +0.3 1.1 transcriptional regulator compare
PGA1_c23430 +0.3 2.4 Domain of unknown function. compare
PGA1_c19720 +0.3 1.9 TfoX C-terminal domain. compare
PGA1_c01060 +0.3 0.9 ribonuclease 3 compare
PGA1_c16830 +0.3 1.4 xanthine phosphoribosyltransferase Gpt compare
PGA1_c25060 +0.3 1.8 putative glutathione-dependent formaldehyde-activating enzyme, GFA compare
PGA1_c20200 +0.3 2.2 two-component signal transduction system, response regulator compare
PGA1_c35930 +0.3 2.0 hypothetical protein compare
PGA1_c06210 +0.3 1.3 probable succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A compare
PGA1_c17190 +0.3 2.0 Predicted membrane protein compare
PGA1_c33230 +0.3 2.0 thioredoxin-like protein compare
PGA1_c17770 +0.3 0.9 Protein of unknown function (DUF3356). compare
PGA1_c17520 +0.3 1.5 putative peptidyl-prolyl cis-trans isomerase A compare
PGA1_c32910 +0.3 0.7 hypothetical protein compare
PGA1_c07210 +0.3 1.8 inositol 2-dehydrogenase IdhA compare
PGA1_c15710 +0.3 1.3 acyl-CoA dehydrogenase compare
PGA1_c13480 +0.3 2.0 hypothetical protein compare
PGA1_65p00170 +0.3 1.6 putative capsular polysaccharide biosynthesis protein compare
PGA1_c03330 +0.3 1.1 tetratricopeptide repeat-containing protein compare
PGA1_c15790 +0.3 0.8 putative phosphate transporter, phosphate-binding protein compare
PGA1_c05110 +0.3 2.1 dihydrodipicolinate synthase domain-containing protein compare
PGA1_c04010 +0.3 0.7 putative universal stress protein compare
PGA1_c16460 +0.3 1.6 2-isopropylmalate synthase/homocitrate synthase-like protein compare
PGA1_c28320 +0.3 1.5 ABC transporter, ATP-binding protein compare
PGA1_c14640 +0.3 1.1 hypothetical protein compare
PGA1_c24140 +0.3 1.6 protein-tyrosine phosphatase compare
PGA1_c31990 +0.3 1.8 peptidase, family S58 compare
PGA1_c04340 +0.3 1.3 hypothetical protein compare
PGA1_c15230 +0.3 1.4 rRNA methyltransferase-like protein compare
PGA1_c15100 +0.3 1.0 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ compare
PGA1_c01940 +0.3 0.8 crcB-like protein compare
PGA1_78p00250 +0.3 0.6 putative HTH-type transcriptional regulator compare
PGA1_c27160 +0.3 2.4 TRAP transporter, subunit DctM compare
PGA1_262p01030 +0.3 1.1 dipeptide transport system permease protein DppB compare
PGA1_c23870 +0.3 1.3 nitrile hydratase subunit beta compare
PGA1_c35760 +0.3 1.4 flagellar L-ring protein FlgH compare
PGA1_c16290 +0.3 1.7 dipeptide transport system permease protein DppC compare
PGA1_c33055 +0.3 1.4 hypothetical protein compare
PGA1_c18380 +0.3 0.4 Phage Head-Tail Attachment. compare
PGA1_c07120 +0.3 1.2 putative universal stress protein compare


Specific Phenotypes

For 4 genes in this experiment

For nitrogen source L-Tryptophan in Phaeobacter inhibens DSM 17395

For nitrogen source L-Tryptophan across organisms