Experiment set8IT070 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS18930 -10.3 -4.9 histidinol-phosphate transaminase compare
BWI76_RS20965 -9.8 -4.5 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS23220 -9.0 -6.2 amino-acid N-acetyltransferase compare
BWI76_RS04675 -8.9 -6.1 3-isopropylmalate dehydrogenase compare
BWI76_RS09755 -8.3 -5.7 phosphoserine transaminase compare
BWI76_RS20895 -8.2 -5.7 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS20350 -8.1 -6.2 amidophosphoribosyltransferase compare
BWI76_RS00855 -8.1 -5.6 argininosuccinate lyase compare
BWI76_RS23920 -8.0 -4.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04160 -8.0 -6.7 phosphoserine phosphatase compare
BWI76_RS24285 -7.9 -7.8 cystathionine beta-lyase compare
BWI76_RS00990 -7.8 -7.6 ketol-acid reductoisomerase compare
BWI76_RS04465 -7.7 -4.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS04470 -7.7 -7.5 carbamoyl phosphate synthase large subunit compare
BWI76_RS11965 -7.6 -4.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS04645 -7.5 -5.2 3-dehydroquinase compare
BWI76_RS18950 -7.3 -5.0 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS08385 -7.1 -3.1 citrate (Si)-synthase compare
BWI76_RS11850 -7.1 -7.8 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS11855 -7.1 -6.0 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS04685 -7.0 -10.8 putative leucine operon leader peptide compare
BWI76_RS09760 -7.0 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS18925 -7.0 -4.7 histidinol dehydrogenase compare
BWI76_RS18935 -6.9 -5.6 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS05840 -6.8 -6.1 glutamate 5-kinase compare
BWI76_RS09645 -6.8 -1.9 thioredoxin-disulfide reductase compare
BWI76_RS10990 -6.7 -3.0 dihydroorotase compare
BWI76_RS04665 -6.6 -21.1 3-isopropylmalate dehydratase small subunit compare
BWI76_RS11860 -6.4 -7.7 anthranilate synthase component I compare
BWI76_RS04255 -6.3 -10.2 threonine synthase compare
BWI76_RS00980 -6.3 -11.2 PLP-dependent threonine dehydratase compare
BWI76_RS00785 -6.2 -7.4 cystathionine gamma-synthase compare
BWI76_RS03010 -6.1 -8.5 ornithine carbamoyltransferase compare
BWI76_RS26085 -6.1 -2.9 3-dehydroquinate synthase compare
BWI76_RS18920 -6.1 -4.2 ATP phosphoribosyltransferase compare
BWI76_RS27385 -6.1 -7.0 orotate phosphoribosyltransferase compare
BWI76_RS18955 -6.0 -4.7 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS04670 -6.0 -8.3 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04250 -5.9 -6.6 homoserine kinase compare
BWI76_RS23365 -5.8 -5.4 LysR family transcriptional regulator compare
BWI76_RS00835 -5.8 -10.4 phosphoenolpyruvate carboxylase compare
BWI76_RS26570 -5.8 -4.0 anion permease compare
BWI76_RS02995 -5.7 -7.4 aspartate carbamoyltransferase compare
BWI76_RS13920 -5.7 -6.4 magnesium-translocating P-type ATPase compare
BWI76_RS01630 -5.7 -1.6 16S ribosomal RNA compare
BWI76_RS04510 -5.7 -2.7 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS05835 -5.6 -3.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS20355 -5.6 -3.7 colicin V production protein compare
BWI76_RS01615 -5.5 -10.4 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS25115 -5.5 -7.5 argininosuccinate synthase compare
BWI76_RS01655 -5.4 -4.9 homoserine O-succinyltransferase compare
BWI76_RS04245 -5.4 -13.9 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS00985 -5.4 -7.4 transcriptional regulator IlvY compare
BWI76_RS07065 -5.3 -5.7 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS00850 -5.2 -7.3 acetylglutamate kinase compare
BWI76_RS00965 -5.1 -1.4 acetolactate synthase 2 small subunit compare
BWI76_RS21265 -5.1 -9.3 phosphoribosylformylglycinamidine synthase compare
BWI76_RS07070 -5.1 -4.9 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS04680 -5.0 -10.6 2-isopropylmalate synthase compare
BWI76_RS00975 -5.0 -6.6 dihydroxy-acid dehydratase compare
BWI76_RS21465 -4.9 -4.5 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS22760 -4.9 -6.5 sulfite reductase subunit beta compare
BWI76_RS25600 -4.9 -1.4 tRNA-Thr compare
BWI76_RS00805 -4.8 -4.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS24900 -4.8 -2.6 DeoR family transcriptional regulator compare
BWI76_RS21475 -4.7 -4.7 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18940 -4.7 -2.8 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS09910 -4.7 -12.2 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS11845 -4.5 -2.8 tryptophan synthase subunit beta compare
BWI76_RS22755 -4.5 -7.2 phosphoadenosine phosphosulfate reductase compare
BWI76_RS11840 -4.3 -5.1 tryptophan synthase subunit alpha compare
BWI76_RS22690 -4.1 -4.6 adenylyl-sulfate kinase compare
BWI76_RS22765 -4.1 -7.5 sulfite reductase subunit alpha compare
BWI76_RS20435 -4.1 -1.6 chorismate synthase compare
BWI76_RS01610 -4.1 -5.5 phosphoribosylamine--glycine ligase compare
BWI76_RS00845 -4.0 -8.9 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS23240 -4.0 -2.8 exonuclease V subunit gamma compare
BWI76_RS00180 -3.9 -1.5 F0F1 ATP synthase subunit epsilon compare
BWI76_RS25645 -3.9 -4.4 shikimate dehydrogenase compare
BWI76_RS15115 -3.9 -6.9 MFS transporter compare
BWI76_RS06525 -3.8 -4.3 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS05015 -3.8 -2.4 transcriptional regulator compare
BWI76_RS23480 -3.7 -12.6 EAL domain-containing protein compare
BWI76_RS27390 -3.6 -4.3 ribonuclease PH compare
BWI76_RS25320 -3.6 -5.1 glutamate synthase compare
BWI76_RS18770 -3.5 -1.4 DNA gyrase inhibitor compare
BWI76_RS01200 -3.4 -2.4 diaminopimelate epimerase compare
BWI76_RS01800 -3.4 -2.8 glucose-6-phosphate isomerase compare
BWI76_RS09660 -3.4 -2.1 DNA translocase FtsK compare
BWI76_RS27425 -3.4 -2.6 DNA-directed RNA polymerase subunit omega compare
BWI76_RS26055 -3.4 -5.1 siroheme synthase compare
BWI76_RS23230 -3.4 -2.3 exodeoxyribonuclease V subunit beta compare
BWI76_RS00960 -3.3 -3.5 acetolactate synthase 2 catalytic subunit compare
BWI76_RS26620 -3.2 -1.3 Fe-S biogenesis protein NfuA compare
BWI76_RS25315 -3.2 -7.1 glutamate synthase large subunit compare
BWI76_RS05790 -3.1 -1.7 phage DNA-binding protein compare
BWI76_RS25065 -2.9 -2.9 polyribonucleotide nucleotidyltransferase compare
BWI76_RS20795 -2.9 -1.4 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS04240 -2.9 -2.7 thr operon leader peptide compare
BWI76_RS02735 -2.9 -2.5 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS02530 -2.8 -2.6 tRNA dimethylallyltransferase compare
BWI76_RS09635 -2.6 -2.4 amino acid ABC transporter ATP-binding protein compare
BWI76_RS26000 -2.5 -4.8 aspartate aminotransferase family protein compare
BWI76_RS00400 -2.4 -1.4 glutamine synthetase compare
BWI76_RS05200 -2.4 -2.6 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS00345 -2.3 -3.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS01350 -2.3 -1.1 NAD(P)H-flavin reductase compare
BWI76_RS14320 -2.3 -1.4 hypothetical protein compare
BWI76_RS13915 -2.3 -4.2 magnesium transport protein MgtC compare
BWI76_RS17975 -2.2 -2.3 tail-specific protease compare
BWI76_RS00390 -2.2 -3.6 two-component system sensor histidine kinase NtrB compare
BWI76_RS06530 -2.1 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS20380 -2.1 -1.1 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS15225 -2.1 -1.5 DeoR family transcriptional regulator compare
BWI76_RS01275 -2.0 -4.3 LysR family transcriptional regulator compare
BWI76_RS25425 -2.0 -1.7 arginine repressor compare
BWI76_RS21140 -2.0 -2.1 molecular chaperone HscA compare
BWI76_RS00385 -2.0 -5.7 nitrogen assimilation regulatory protein compare
BWI76_RS20650 -2.0 -1.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS16355 -2.0 -2.1 electron transport complex subunit A compare
BWI76_RS22805 -2.0 -5.9 GTP diphosphokinase compare
BWI76_RS26175 -1.9 -2.4 DeoR/GlpR family transcriptional regulator compare
BWI76_RS11060 -1.9 -1.5 septum formation inhibitor Maf compare
BWI76_RS15110 -1.9 -7.1 putative excinuclease ABC subunit A compare
BWI76_RS08405 -1.9 -1.4 succinate dehydrogenase flavoprotein subunit compare
BWI76_RS20440 -1.8 -1.0 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS23360 -1.8 -1.0 diaminopimelate decarboxylase compare
BWI76_RS20640 -1.8 -2.2 cysteine synthase A compare
BWI76_RS06765 -1.8 -1.6 transcriptional regulator compare
BWI76_RS20970 -1.8 -1.3 phosphoribosylglycinamide formyltransferase compare
BWI76_RS12070 -1.8 -1.1 hypothetical protein compare
BWI76_RS27165 -1.8 -2.9 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS25300 -1.8 -2.1 hybrid sensor histidine kinase/response regulator compare
BWI76_RS00970 -1.8 -2.4 branched chain amino acid aminotransferase compare
BWI76_RS15835 -1.8 -1.4 hypothetical protein compare
BWI76_RS23265 -1.8 -1.6 hypothetical protein compare
BWI76_RS11335 -1.7 -1.2 tautomerase compare
BWI76_RS14325 -1.7 -2.1 maturase compare
BWI76_RS15060 -1.7 -2.1 MarR family transcriptional regulator compare
BWI76_RS26075 -1.7 -2.5 DNA adenine methylase compare
BWI76_RS04100 -1.6 -1.9 peptide chain release factor 3 compare
BWI76_RS24100 -1.6 -2.8 YggS family pyridoxal phosphate enzyme compare
BWI76_RS01115 -1.5 -2.7 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS13595 -1.5 -2.9 transcriptional regulator compare
BWI76_RS04525 -1.5 -1.1 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS06770 -1.5 -5.3 Hha toxicity attenuator compare
BWI76_RS24025 -1.5 -5.8 agmatinase compare
BWI76_RS05450 -1.5 -1.2 ribonuclease HI compare
BWI76_RS25505 -1.5 -4.5 RNase E specificity factor CsrD compare
BWI76_RS15850 -1.4 -1.1 DUF1317 domain-containing protein compare
BWI76_RS15035 -1.4 -1.6 metal ABC transporter permease compare
BWI76_RS11440 -1.4 -1.0 hypothetical protein compare
BWI76_RS04705 -1.4 -3.5 DNA-binding transcriptional regulator FruR compare
BWI76_RS07595 -1.4 -1.8 putative oxidoreductase compare
BWI76_RS22935 -1.4 -1.5 L-fucose mutarotase compare
BWI76_RS08665 -1.4 -5.3 6-phosphogluconolactonase compare
BWI76_RS21370 -1.4 -1.6 ATP-dependent RNA helicase SrmB compare
BWI76_RS16235 -1.4 -3.5 membrane protein compare
BWI76_RS11430 -1.4 -0.9 lipoprotein compare
BWI76_RS16230 -1.4 -2.4 dihydromonapterin reductase compare
BWI76_RS00380 -1.4 -4.6 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS06185 -1.3 -3.2 shikimate kinase II compare
BWI76_RS16275 -1.3 -1.9 fumarate hydratase FumA compare
BWI76_RS09655 -1.3 -1.9 leucine-responsive regulatory protein compare
BWI76_RS09015 -1.3 -2.1 aldo/keto reductase compare
BWI76_RS26590 -1.3 -1.9 transcriptional regulator compare
BWI76_RS18715 -1.3 -3.2 hypothetical protein compare
BWI76_RS01380 -1.3 -2.5 YigZ family protein compare
BWI76_RS14670 -1.3 -1.7 hypothetical protein compare
BWI76_RS22700 -1.3 -2.0 sulfate adenylyltransferase subunit 2 compare
BWI76_RS15840 -1.2 -2.1 prophage protein compare
BWI76_RS21450 -1.2 -1.7 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS22420 -1.2 -1.5 LacI family transcriptional regulator compare
BWI76_RS21165 -1.2 -1.2 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS06635 -1.2 -1.4 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS01330 -1.2 -2.0 twin-arginine translocase subunit TatC compare
BWI76_RS16965 -1.2 -1.3 murein lipoprotein compare
BWI76_RS07450 -1.2 -2.0 transcriptional regulator compare
BWI76_RS25870 -1.2 -1.1 elongation factor Tu compare
BWI76_RS16470 -1.2 -1.1 transcriptional repressor NemR compare
BWI76_RS22185 -1.2 -1.8 hypothetical protein compare
BWI76_RS12755 -1.2 -2.7 hypothetical protein compare
BWI76_RS21480 -1.1 -1.8 phospho-2-dehydro-3-deoxyheptonate aldolase compare
BWI76_RS21310 -1.1 -0.7 DNA repair protein RecO compare
BWI76_RS27450 -1.1 -1.8 ferredoxin--NADP(+) reductase compare
BWI76_RS12185 -1.1 -1.0 hypothetical protein compare
BWI76_RS24070 -1.1 -1.4 16S rRNA (uracil(1498)-N(3))-methyltransferase compare
BWI76_RS18710 -1.1 -6.0 GGDEF-domain containing protein compare
BWI76_RS25285 -1.1 -0.8 HPr family phosphocarrier protein compare
BWI76_RS24400 -1.1 -2.3 outer membrane channel protein TolC compare
BWI76_RS11775 -1.1 -1.8 2-deoxy-D-gluconate 3-dehydrogenase compare
BWI76_RS09650 -1.1 -2.2 hypothetical protein compare
BWI76_RS26200 -1.1 -2.7 starch synthase compare
BWI76_RS14805 -1.1 -1.5 hypothetical protein compare
BWI76_RS03295 -1.1 -1.0 transposase compare
BWI76_RS25415 -1.1 -1.4 GntR family transcriptional regulator compare
BWI76_RS18455 -1.1 -1.0 tRNA-Ser compare
BWI76_RS24850 -1.0 -3.1 DeoR family transcriptional regulator compare
BWI76_RS05260 -1.0 -1.0 chaperone compare
BWI76_RS04570 -1.0 -3.0 RNA polymerase-associated protein RapA compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms