Experiment set8IT070 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS00025 +1.7 2.0 hypothetical protein compare
BWI76_RS18070 +1.5 2.0 DNA polymerase III subunit epsilon compare
BWI76_RS23125 +1.5 3.2 propanediol dehydratase small subunit compare
BWI76_RS06885 +1.4 1.6 TonB family protein compare
BWI76_RS17770 +1.3 3.6 isomerase/hydrolase compare
BWI76_RS05075 +1.3 1.5 type II secretion system protein GspG compare
BWI76_RS01775 +1.3 1.7 hypothetical protein compare
BWI76_RS13420 +1.2 1.7 ABC transporter permease compare
BWI76_RS25915 +1.2 3.2 protein SlyX compare
BWI76_RS00715 +1.2 2.0 two-component sensor histidine kinase compare
BWI76_RS09455 +1.2 3.5 YbjN domain-containing protein compare
BWI76_RS14040 +1.2 1.7 thiaminase compare
BWI76_RS20785 +1.1 1.6 ethanolamine utilization protein EutJ compare
BWI76_RS08720 +1.1 2.1 imidazolonepropionase compare
BWI76_RS09335 +1.1 1.7 baseplate assembly protein W compare
BWI76_RS02410 +1.1 1.4 EF-P beta-lysylation protein EpmB compare
BWI76_RS01715 +1.0 2.8 shikimate 5-dehydrogenase compare
BWI76_RS01185 +1.0 1.9 adenylate cyclase compare
BWI76_RS17720 +1.0 1.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS20715 +1.0 2.6 RpoE-regulated lipoprotein compare
BWI76_RS22815 +1.0 6.2 hybrid sensor histidine kinase/response regulator compare
BWI76_RS18240 +1.0 2.5 L-arabinose ABC transporter permease AraH compare
BWI76_RS11580 +1.0 2.9 L-asparaginase 1 compare
BWI76_RS12550 +1.0 1.8 hypothetical protein compare
BWI76_RS10640 +1.0 2.6 AraC family transcriptional regulator compare
BWI76_RS16555 +1.0 3.0 hypothetical protein compare
BWI76_RS09615 +1.0 2.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS16895 +1.0 1.5 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS14435 +1.0 1.2 glutamine ABC transporter ATP-binding protein compare
BWI76_RS01905 +0.9 3.2 envelope stress response protein PspG compare
BWI76_RS09905 +0.9 2.2 FMN reductase (NADPH) compare
BWI76_RS00080 +0.9 2.4 N-acetylmannosamine kinase compare
BWI76_RS11300 +0.9 1.2 cupin compare
BWI76_RS18335 +0.9 4.4 DNA-binding response regulator compare
BWI76_RS14665 +0.9 1.8 minor fimbrial subunit YfcQ compare
BWI76_RS18410 +0.9 1.7 drug/metabolite exporter YedA compare
BWI76_RS13180 +0.9 2.7 multidrug transporter EmrA compare
BWI76_RS12170 +0.9 3.0 hypothetical protein compare
BWI76_RS18605 +0.9 1.1 oxidoreductase molybdopterin-binding protein compare
BWI76_RS16015 +0.9 1.7 pheromone autoinducer 2 transporter compare
BWI76_RS06520 +0.9 3.3 trigger factor compare
BWI76_RS10670 +0.9 1.7 PTS fructose transporter subunit IIC compare
BWI76_RS20155 +0.9 1.9 NADH-quinone oxidoreductase subunit I compare
BWI76_RS16900 +0.9 1.4 4-hydroxy-2-oxovalerate aldolase compare
BWI76_RS12790 +0.9 1.4 lactate dehydrogenase compare
BWI76_RS16660 +0.9 2.3 SfnB family sulfur acquisition oxidoreductase compare
BWI76_RS06465 +0.9 0.9 IclR family transcriptional regulator compare
BWI76_RS07325 +0.8 2.5 aminoimidazole riboside kinase compare
BWI76_RS11700 +0.8 1.4 hypothetical protein compare
BWI76_RS02745 +0.8 1.2 hypothetical protein compare
BWI76_RS12225 +0.8 1.9 hypothetical protein compare
BWI76_RS04400 +0.8 1.9 alanyl-tRNA synthetase compare
BWI76_RS14825 +0.8 1.7 dienelactone hydrolase family protein compare
BWI76_RS15195 +0.8 2.0 DUF4186 domain-containing protein compare
BWI76_RS19365 +0.8 2.1 ribulokinase compare
BWI76_RS12125 +0.8 1.0 hypothetical protein compare
BWI76_RS25420 +0.8 2.4 malate dehydrogenase compare
BWI76_RS18550 +0.8 1.4 tRNA-Asn compare
BWI76_RS14505 +0.8 1.1 salicylate synthase Irp9 compare
BWI76_RS23535 +0.8 1.6 hypothetical protein compare
BWI76_RS21660 +0.8 1.5 antirestriction protein compare
BWI76_RS17570 +0.8 0.9 iron-sulfur-binding protein compare
BWI76_RS05880 +0.8 1.4 AraC-type DNA-binding domain-containing protein compare
BWI76_RS21345 +0.8 1.5 sigma-E factor regulatory protein RseB compare
BWI76_RS07225 +0.8 3.2 putative oxidoreductase compare
BWI76_RS06175 +0.8 1.5 DUF188 domain-containing protein compare
BWI76_RS13715 +0.8 2.5 2-chlorobenzoate 1 2-dioxygenase electron transfer subunit compare
BWI76_RS10245 +0.8 1.3 aspartate aminotransferase compare
BWI76_RS04440 +0.8 1.9 citrate lyase ACP compare
BWI76_RS00655 +0.7 3.2 inner-membrane translocator compare
BWI76_RS26750 +0.7 3.4 PfkB domain-containing protein compare
BWI76_RS07285 +0.7 2.0 LysR family transcriptional regulator compare
BWI76_RS23000 +0.7 1.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
BWI76_RS20750 +0.7 0.9 carboxysome structural protein EutK compare
BWI76_RS08310 +0.7 1.9 potassium-transporting ATPase subunit C compare
BWI76_RS27510 +0.7 1.9 aquaporin compare
BWI76_RS11285 +0.7 1.1 transcriptional regulator compare
BWI76_RS21715 +0.7 1.8 transcriptional regulator compare
BWI76_RS06810 +0.7 1.5 hypothetical protein compare
BWI76_RS26835 +0.7 3.3 hypothetical protein compare
BWI76_RS08885 +0.7 2.3 transcriptional regulator compare
BWI76_RS20140 +0.7 2.9 NADH-quinone oxidoreductase subunit L compare
BWI76_RS12750 +0.7 1.9 hypothetical protein compare
BWI76_RS24280 +0.7 1.1 biopolymer transporter ExbB compare
BWI76_RS27620 +0.7 1.1 hypothetical protein compare
BWI76_RS23705 +0.7 1.8 2-deoxy-D-ribonyl-CoA 3-dehydrogenase (from data) compare
BWI76_RS13890 +0.7 1.3 LysR family transcriptional regulator compare
BWI76_RS17645 +0.7 1.6 hypothetical protein compare
BWI76_RS05685 +0.7 3.9 dihydrodipicolinate synthase family protein compare
BWI76_RS27075 +0.7 2.3 IclR family transcriptional regulator compare
BWI76_RS14170 +0.7 1.8 hypothetical protein compare
BWI76_RS00095 +0.7 1.7 DNA-binding transcriptional regulator compare
BWI76_RS19585 +0.7 1.6 gentisate 1,2-dioxygenase compare
BWI76_RS07985 +0.7 0.7 fluoride ion transporter CrcB compare
BWI76_RS10575 +0.7 1.1 polar amino acid ABC transporter permease compare
BWI76_RS13640 +0.7 2.7 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS15235 +0.7 2.2 hypothetical protein compare
BWI76_RS13380 +0.7 1.7 hypothetical protein compare
BWI76_RS08535 +0.7 0.5 translocation protein TolB compare
BWI76_RS24110 +0.7 1.4 YggU family protein compare
BWI76_RS24770 +0.7 0.8 hypothetical protein compare
BWI76_RS07455 +0.7 1.7 NAD(P)H nitroreductase compare
BWI76_RS24255 +0.7 1.9 thiol:disulfide oxidoreductase compare
BWI76_RS10835 +0.6 1.1 hypothetical protein compare
BWI76_RS18595 +0.6 1.4 hypothetical protein compare
BWI76_RS11260 +0.6 1.3 hypothetical protein compare
BWI76_RS21890 +0.6 2.4 oxidoreductase compare
BWI76_RS05655 +0.6 1.1 hypothetical protein compare
BWI76_RS10955 +0.6 0.8 hypothetical protein compare
BWI76_RS12865 +0.6 2.0 acetylornithine deacetylase compare
BWI76_RS23575 +0.6 2.3 hypothetical protein compare
BWI76_RS06015 +0.6 1.1 hypothetical protein compare
BWI76_RS04605 +0.6 0.9 thiamine ABC transporter ATP-binding protein compare
BWI76_RS22505 +0.6 2.0 3-oxoacyl-ACP reductase compare
BWI76_RS12500 +0.6 2.2 dipeptide epimerase compare
BWI76_RS07605 +0.6 2.4 N-acetyltransferase GCN5 compare
BWI76_RS17775 +0.6 1.4 hypothetical protein compare
BWI76_RS17315 +0.6 1.3 EamA family transporter compare
BWI76_RS13275 +0.6 1.4 hypothetical protein compare
BWI76_RS15190 +0.6 2.5 GGDEF domain-containing protein compare
BWI76_RS09860 +0.6 1.4 hypothetical protein compare
BWI76_RS16220 +0.6 1.5 hypothetical protein compare
BWI76_RS10820 +0.6 1.6 iron uptake system protein EfeO compare
BWI76_RS21995 +0.6 2.4 transcriptional regulator compare
BWI76_RS20540 +0.6 2.7 NupC/NupG family nucleoside CNT transporter compare
BWI76_RS24275 +0.6 0.9 biopolymer transport protein ExbD compare
BWI76_RS15445 +0.6 1.8 hypothetical protein compare
BWI76_RS13405 +0.6 2.4 spermidine/putrescine ABC transporter substrate-binding protein compare
BWI76_RS15345 +0.6 2.4 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
BWI76_RS22295 +0.6 2.9 6-phospho-beta-glucosidase compare
BWI76_RS00075 +0.6 1.1 N-acetylmannosamine-6-phosphate 2-epimerase compare
BWI76_RS04815 +0.6 1.8 cell division protein ZapD compare
BWI76_RS05645 +0.6 1.2 fructuronate reductase compare
BWI76_RS27850 +0.6 2.0 DNA-binding transcriptional regulator DsdC compare
BWI76_RS23505 +0.6 4.9 ferrous iron transporter B compare
BWI76_RS15350 +0.6 0.9 hypothetical protein compare
BWI76_RS24775 +0.6 3.3 hypothetical protein compare
BWI76_RS11435 +0.6 0.9 hypothetical protein compare
BWI76_RS14460 +0.6 2.0 MurR/RpiR family transcriptional regulator compare
BWI76_RS01325 +0.6 0.6 twin-arginine translocase subunit TatB compare
BWI76_RS16025 +0.6 0.7 triphosphoribosyl-dephospho-CoA synthase compare
BWI76_RS15150 +0.6 2.4 outer membrane efflux protein compare
BWI76_RS21130 +0.6 1.2 Fe-S assembly protein IscX compare
BWI76_RS23330 +0.6 2.0 transcriptional regulator GalR compare
BWI76_RS20915 +0.6 2.8 peroxiredoxin compare
BWI76_RS24295 +0.6 1.3 AraC family transcriptional regulator compare
BWI76_RS07510 +0.6 0.9 hypothetical protein compare
BWI76_RS06080 +0.6 1.6 taurine dioxygenase compare
BWI76_RS05860 +0.6 2.5 alkanesulfonates-binding protein compare
BWI76_RS10530 +0.6 0.9 GntR family transcriptional regulator with compare
BWI76_RS05900 +0.6 2.3 phosphonate ABC transporter, permease protein PhnE compare
BWI76_RS09690 +0.6 1.0 dimethyl sulfoxide reductase compare
BWI76_RS27225 +0.6 2.2 rhodanese-like domain-containing protein compare
BWI76_RS22375 +0.6 1.6 pectin acetylesterase compare
BWI76_RS20090 +0.6 1.5 ribonuclease Z compare
BWI76_RS05955 +0.6 1.3 ABC transporter compare
BWI76_RS12980 +0.6 1.9 AraC family transcriptional regulator compare
BWI76_RS13745 +0.6 2.3 formate dehydrogenase subunit beta compare
BWI76_RS27600 +0.6 1.2 tRNA-Sec compare
BWI76_RS08605 +0.6 1.3 phosphoglyceromutase compare
BWI76_RS06180 +0.6 2.1 hypothetical protein compare
BWI76_RS24610 +0.6 1.4 dihydroxyacetone kinase compare
BWI76_RS25035 +0.6 1.5 malonate transporter subunit MadM compare
BWI76_RS03015 +0.6 1.4 RNase E inhibitor protein compare
BWI76_RS18885 +0.6 1.3 nitrogen fixation regulatory protein compare
BWI76_RS20170 +0.6 2.6 NADH-quinone oxidoreductase subunit F compare
BWI76_RS13600 +0.6 1.5 hypothetical protein compare
BWI76_RS21680 +0.6 2.2 antitoxin of the YeeV-YeeU toxin-antitoxin system compare
BWI76_RS00335 +0.6 1.5 hypothetical protein compare
BWI76_RS21675 +0.6 0.7 hypothetical protein compare
BWI76_RS21495 +0.6 1.6 outer membrane lipoprotein compare
BWI76_RS03835 +0.6 1.1 4-hydroxyphenylacetate catabolism regulatory protein HpaA compare
BWI76_RS23150 +0.6 1.2 propanediol utilization phosphotransacylase compare
BWI76_RS16760 +0.6 1.1 lipase compare
BWI76_RS14775 +0.6 0.7 creatinine amidohydrolase compare
BWI76_RS01995 +0.6 0.7 AraC family transcriptional regulator compare
BWI76_RS23945 +0.6 2.0 methylmalonyl-CoA decarboxylase compare
BWI76_RS09285 +0.6 2.1 hypothetical protein compare
BWI76_RS00745 +0.6 1.8 1,4-dihydroxy-2-naphthoate polyprenyltransferase compare
BWI76_RS05205 +0.6 1.4 type I methionyl aminopeptidase compare
BWI76_RS04165 +0.6 1.7 DNA repair protein RadA compare
BWI76_RS06110 +0.6 3.1 hypothetical protein compare
BWI76_RS16120 +0.6 1.2 4-carboxymuconolactone decarboxylase compare
BWI76_RS19445 +0.6 2.0 hypothetical protein compare
BWI76_RS13415 +0.5 2.0 spermidine/putrescine ABC transporter permease compare
BWI76_RS12040 +0.5 0.9 hypothetical protein compare
BWI76_RS02825 +0.5 1.3 putative acyltransferase domain protein compare
BWI76_RS20565 +0.5 1.0 hypothetical protein compare
BWI76_RS20735 +0.5 1.4 N-acetylmuramoyl-L-alanine amidase compare
BWI76_RS00590 +0.5 1.1 hypothetical protein compare
BWI76_RS04805 +0.5 1.9 8-oxo-dGTP diphosphatase compare
BWI76_RS26290 +0.5 1.1 glycerol-3-phosphate ABC transporter ATP-binding protein compare
BWI76_RS16755 +0.5 1.8 acetoin reductase compare
BWI76_RS23040 +0.5 2.1 sirohydrochlorin cobaltochelatase compare
BWI76_RS26680 +0.5 2.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ compare
BWI76_RS23470 +0.5 3.9 hypothetical protein compare
BWI76_RS05010 +0.5 2.2 tRNA glutamyl-Q synthetase compare
BWI76_RS12985 +0.5 1.0 transcriptional regulator compare
BWI76_RS26235 +0.5 2.4 gluconate transporter compare
BWI76_RS27605 +0.5 0.7 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms