Experiment set8IT070 for Cupriavidus basilensis FW507-4G11

Compare to:

Carbon source 2-Deoxy-D-Ribose 20 mM

200 most important genes:

  gene name fitness t score description  
RR42_RS24980 -5.0 -1.7 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase compare
RR42_RS37400 -4.6 -1.6 6-phosphogluconolactonase compare
RR42_RS04205 -4.2 -2.9 glycine cleavage system regulatory protein compare
RR42_RS27215 -4.0 -3.2 LysR family transcriptional regulator compare
RR42_RS34520 -3.9 -1.3 transposase compare
RR42_RS14320 -3.6 -6.4 O-succinylhomoserine sulfhydrylase compare
RR42_RS15640 -3.6 -1.2 hypothetical protein compare
RR42_RS29335 -3.5 -2.5 integrase compare
RR42_RS23565 -3.5 -1.2 flagellar motor switch protein G compare
RR42_RS01385 -3.5 -2.6 5,10-methylenetetrahydrofolate reductase compare
RR42_RS14390 -3.2 -4.5 3-isopropylmalate dehydratase compare
RR42_RS17375 -3.1 -1.5 hypothetical protein compare
RR42_RS17390 -3.1 -7.2 ATP-dependent DNA helicase RecG compare
RR42_RS06325 -3.0 -1.4 serine O-acetyltransferase compare
RR42_RS16265 -3.0 -3.1 required for sulfate utilization, putative electron transport protein for sulfite reductase (from data) compare
RR42_RS04475 -3.0 -9.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
RR42_RS07615 -2.8 -2.3 3-ketoacyl-ACP reductase compare
RR42_RS04535 -2.8 -3.6 cysteine synthase compare
RR42_RS24550 -2.8 -1.2 hypothetical protein compare
RR42_RS19005 -2.7 -4.6 3-dehydroquinate synthase compare
RR42_RS16245 -2.7 -5.5 uroporphyrin-III methyltransferase compare
RR42_RS01290 -2.6 -6.8 thiamine biosynthesis protein ThiC compare
RR42_RS03080 -2.6 -3.6 recombinase RecA compare
RR42_RS20810 -2.6 -2.1 hypothetical protein compare
RR42_RS16250 -2.6 -4.3 sulfate adenylyltransferase compare
RR42_RS36450 -2.6 -1.2 acyl dehydratase compare
RR42_RS16280 -2.6 -5.7 transcriptional regulator compare
RR42_RS25015 -2.6 -2.1 gluconolactonase compare
RR42_RS17055 -2.5 -7.1 LuxR family transcriptional regulator compare
RR42_RS01845 -2.5 -2.7 glycerol-3-phosphate dehydrogenase compare
RR42_RS07140 -2.5 -1.8 hypothetical protein compare
RR42_RS18305 -2.4 -4.2 anthranilate phosphoribosyltransferase compare
RR42_RS18990 -2.4 -14.3 glutamate synthase compare
RR42_RS35600 -2.4 -2.8 hypothetical protein compare
RR42_RS15525 -2.4 -1.1 hypothetical protein compare
RR42_RS15050 -2.4 -8.6 DNA polymerase I compare
RR42_RS04460 -2.4 -7.9 chorismate mutase compare
RR42_RS11795 -2.3 -1.9 PEP synthetase regulatory protein compare
RR42_RS04895 -2.3 -9.6 serine/threonine protein phosphatase compare
RR42_RS17560 -2.3 -7.2 Fur family transcriptional regulator compare
RR42_RS14365 -2.2 -3.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
RR42_RS05860 -2.2 -3.5 phospho-2-dehydro-3-deoxyheptonate aldolase compare
RR42_RS14400 -2.2 -4.6 isopropylmalate isomerase compare
RR42_RS02775 -2.2 -1.9 molecular chaperone SurA compare
RR42_RS22940 -2.2 -3.1 TetR family transcriptional regulator compare
RR42_RS17565 -2.2 -10.0 LysR family transcriptional regulator compare
RR42_RS16275 -2.2 -3.6 membrane protein compare
RR42_RS02705 -2.2 -2.2 Holliday junction DNA helicase RuvA compare
RR42_RS01160 -2.2 -10.4 homoserine O-acetyltransferase compare
RR42_RS14125 -2.1 -2.0 metal-binding protein compare
RR42_RS00715 -2.1 -1.4 ferritin compare
RR42_RS12040 -2.1 -10.9 MFS transporter compare
RR42_RS31830 -2.1 -1.6 short-chain dehydrogenase compare
RR42_RS29865 -2.1 -2.9 hypothetical protein compare
RR42_RS05715 -2.1 -7.7 acyl-CoA dehydrogenase conserved
RR42_RS06485 -2.0 -5.0 chorismate synthase compare
RR42_RS16255 -2.0 -6.9 sulfate adenylyltransferase compare
RR42_RS23460 -2.0 -2.3 alpha/beta hydrolase compare
RR42_RS16270 -2.0 -6.3 sulfite reductase compare
RR42_RS24930 -2.0 -0.9 AraC family transcriptional regulator compare
RR42_RS14385 -2.0 -4.5 3-isopropylmalate dehydrogenase compare
RR42_RS08110 -2.0 -1.6 hypothetical protein compare
RR42_RS01795 -2.0 -11.5 phosphoenolpyruvate-protein phosphotransferase compare
RR42_RS13800 -2.0 -4.7 formyltetrahydrofolate deformylase compare
RR42_RS07425 -2.0 -6.6 IclR family transcriptional regulator compare
RR42_RS05420 -1.9 -5.3 membrane protein compare
RR42_RS00345 -1.9 -1.8 LysR family transcriptional regulator compare
RR42_RS23970 -1.9 -2.0 hypothetical protein compare
RR42_RS18295 -1.9 -9.7 anthranilate synthase component I compare
RR42_RS17060 -1.9 -11.0 histidine kinase compare
RR42_RS33600 -1.9 -1.5 oxidoreductase compare
RR42_RS28720 -1.8 -1.5 hypothetical protein compare
RR42_RS02555 -1.8 -2.6 transcriptional regulator compare
RR42_RS12580 -1.8 -1.6 phosphate transport regulator compare
RR42_RS15015 -1.8 -0.8 exodeoxyribonuclease VII small subunit compare
RR42_RS18850 -1.8 -2.1 preprotein translocase subunit TatC compare
RR42_RS19765 -1.8 -1.5 arsenate reductase compare
RR42_RS18310 -1.8 -1.3 indole-3-glycerol-phosphate synthase compare
RR42_RS35085 -1.8 -4.1 MarR family transcriptional regulator compare
RR42_RS04850 -1.8 -2.2 hypothetical protein compare
RR42_RS12175 -1.7 -8.6 malate synthase compare
RR42_RS16260 -1.7 -2.7 phosphoadenosine phosphosulfate reductase compare
RR42_RS17645 -1.7 -6.0 shikimate dehydrogenase compare
RR42_RS17385 -1.7 -7.6 LysR family transcriptional regulator compare
RR42_RS17590 -1.7 -1.9 16S rRNA methyltransferase compare
RR42_RS21835 -1.7 -3.2 muconate cycloisomerase compare
RR42_RS07325 -1.7 -5.3 exodeoxyribonuclease III compare
RR42_RS02045 -1.7 -7.2 GTPase compare
RR42_RS19750 -1.7 -1.1 MBL fold metallo-hydrolase compare
RR42_RS19625 -1.7 -2.7 hypothetical protein compare
RR42_RS25400 -1.6 -3.2 MarR family transcriptional regulator compare
RR42_RS21790 -1.6 -1.8 short-chain dehydrogenase compare
RR42_RS21000 -1.6 -2.1 glycosyl transferase compare
RR42_RS35295 -1.6 -1.1 diguanylate cyclase compare
RR42_RS17970 -1.6 -1.2 hypothetical protein compare
RR42_RS12555 -1.6 -4.5 alkyl hydroperoxide reductase compare
RR42_RS16175 -1.6 -1.3 enoyl-CoA hydratase compare
RR42_RS21470 -1.6 -1.0 hypothetical protein compare
RR42_RS16240 -1.6 -0.8 cobalamin biosynthesis protein CbiX compare
RR42_RS09290 -1.6 -1.4 hypothetical protein compare
RR42_RS18300 -1.6 -2.8 anthranilate synthase subunit II compare
RR42_RS33575 -1.6 -2.5 hypothetical protein compare
RR42_RS06250 -1.5 -1.6 dihydrodipicolinate synthase compare
RR42_RS13435 -1.5 -6.2 polyphosphate kinase compare
RR42_RS12050 -1.5 -4.4 DNA polymerase compare
RR42_RS06870 -1.5 -2.2 hypothetical protein compare
RR42_RS08185 -1.5 -1.4 hypothetical protein compare
RR42_RS07955 -1.5 -3.4 allantoate amidohydrolase compare
RR42_RS18985 -1.5 -4.4 glutamate synthase compare
RR42_RS36305 -1.5 -2.0 TetR family transcriptional regulator compare
RR42_RS21755 -1.5 -2.2 shikimate dehydrogenase compare
RR42_RS12545 -1.5 -7.2 aminotransferase compare
RR42_RS25650 -1.5 -1.0 hypothetical protein compare
RR42_RS14930 -1.5 -2.9 biopolymer transporter ExbD compare
RR42_RS05465 -1.5 -6.2 2-isopropylmalate synthase compare
RR42_RS24490 -1.4 -0.9 hypothetical protein compare
RR42_RS23985 -1.4 -2.3 hypothetical protein compare
RR42_RS33510 -1.4 -5.1 permease compare
RR42_RS06355 -1.4 -2.8 Fe-S cluster assembly protein HesB compare
RR42_RS25200 -1.4 -3.3 TetR family transcriptional regulator compare
RR42_RS34385 -1.4 -2.9 glutathione peroxidase compare
RR42_RS05100 -1.4 -2.4 acetaldehyde dehydrogenase compare
RR42_RS11520 -1.4 -2.1 ABC transporter ATP-binding protein compare
RR42_RS01775 -1.4 -3.1 glutamate--cysteine ligase compare
RR42_RS08505 -1.4 -1.5 DNA-binding protein compare
RR42_RS05485 -1.4 -1.2 polynucleotide phosphorylase/polyadenylase compare
RR42_RS23685 -1.4 -5.3 transcriptional regulator compare
RR42_RS18475 -1.3 -2.2 membrane protein compare
RR42_RS23870 -1.3 -1.8 hypothetical protein compare
RR42_RS04470 -1.3 -3.1 prephenate dehydrogenase compare
RR42_RS00875 -1.3 -6.9 isocitrate dehydrogenase compare
RR42_RS00430 -1.3 -1.7 histidine kinase compare
RR42_RS14395 -1.3 -1.3 entericidin compare
RR42_RS32590 -1.3 -1.0 cytochrome o ubiquinol oxidase subunit III compare
RR42_RS25030 -1.3 -1.7 ABC transporter permease compare
RR42_RS01785 -1.3 -2.9 PTS fructose transporter subunit IIA compare
RR42_RS08675 -1.3 -1.5 hypothetical protein compare
RR42_RS26455 -1.3 -1.0 amino acid ABC transporter ATP-binding protein compare
RR42_RS17490 -1.3 -3.3 NADP transhydrogenase subunit alpha compare
RR42_RS21745 -1.3 -2.9 hypothetical protein compare
RR42_RS04545 -1.3 -6.1 deacetylase compare
RR42_RS00250 -1.2 -3.9 GntR family transcriptional regulator compare
RR42_RS32585 -1.2 -1.2 cytochrome C oxidase compare
RR42_RS13500 -1.2 -2.5 membrane protein compare
RR42_RS06585 -1.2 -8.6 GTP pyrophosphokinase compare
RR42_RS05725 -1.2 -2.3 hypothetical protein compare
RR42_RS22495 -1.2 -1.6 hypothetical protein compare
RR42_RS33690 -1.2 -1.2 phosphate acetyltransferase compare
RR42_RS08615 -1.2 -1.9 membrane protein compare
RR42_RS02060 -1.2 -5.9 nucleotide-binding protein compare
RR42_RS23505 -1.2 -3.9 catechol 1,2-dioxygenase compare
RR42_RS15180 -1.2 -2.6 hypothetical protein compare
RR42_RS05385 -1.2 -2.2 LOG family protein compare
RR42_RS31950 -1.2 -3.3 ketoacid CoA transferase compare
RR42_RS09470 -1.2 -2.0 2-dehydro-3-deoxygluconokinase compare
RR42_RS15810 -1.2 -1.8 UDP-N-acetylglucosamine 4,6-dehydratase compare
RR42_RS17150 -1.2 -3.4 hypothetical protein compare
RR42_RS09495 -1.2 -1.7 LacI family transcriptional regulator compare
RR42_RS16685 -1.2 -1.1 tRNA-Leu compare
RR42_RS06930 -1.2 -1.4 hypothetical protein compare
RR42_RS20890 -1.2 -1.8 phosphatase compare
RR42_RS11550 -1.2 -2.2 3-oxoacyl-ACP reductase compare
RR42_RS07555 -1.2 -1.1 potassium transporter Kup compare
RR42_RS14360 -1.1 -1.1 tryptophan synthase subunit alpha compare
RR42_RS05890 -1.1 -4.7 glutamine-synthetase adenylyltransferase compare
RR42_RS04765 -1.1 -1.3 3-oxoacyl-ACP reductase compare
RR42_RS26320 -1.1 -2.8 LysR family transcriptional regulator compare
RR42_RS02785 -1.1 -1.7 dimethyladenosine transferase compare
RR42_RS23355 -1.1 -1.0 flagellar biosynthetic protein FliQ compare
RR42_RS10415 -1.1 -0.8 hypothetical protein compare
RR42_RS13570 -1.1 -5.2 hydroxyacylglutathione hydrolase compare
RR42_RS21295 -1.1 -1.2 L-lactate dehydrogenase, LutA subunit (from data) compare
RR42_RS01435 -1.1 -2.6 short-chain dehydrogenase compare
RR42_RS29610 -1.1 -1.1 cytochrome C2 compare
RR42_RS09260 -1.1 -2.4 TetR family transcriptional regulator compare
RR42_RS34845 -1.1 -2.7 chemotaxis protein compare
RR42_RS17035 -1.1 -2.0 hypothetical protein compare
RR42_RS34535 -1.1 -1.5 membrane protein compare
RR42_RS22490 -1.1 -3.0 IclR family transcriptional regulator compare
RR42_RS05745 -1.1 -5.7 aminoglycoside phosphotransferase conserved
RR42_RS15090 -1.1 -2.4 DNA helicase compare
RR42_RS21825 -1.1 -1.0 hypothetical protein compare
RR42_RS27625 -1.0 -1.8 TetR family transcriptional regulator compare
RR42_RS17505 -1.0 -5.8 NAD synthetase compare
RR42_RS15845 -1.0 -1.3 biotin transporter BioY compare
RR42_RS05920 -1.0 -2.2 HrcA family transcriptional regulator compare
RR42_RS32740 -1.0 -0.7 enoyl-CoA hydratase compare
RR42_RS06875 -1.0 -0.8 hypothetical protein compare
RR42_RS34815 -1.0 -1.6 diguanylate cyclase compare
RR42_RS05970 -1.0 -4.8 endonuclease III compare
RR42_RS01920 -1.0 -1.4 protoheme IX farnesyltransferase compare
RR42_RS08470 -1.0 -1.0 hypothetical protein compare
RR42_RS13125 -1.0 -2.2 pyrrolo-quinoline quinone compare
RR42_RS26920 -1.0 -2.7 TetR family transcriptional regulator compare
RR42_RS27115 -1.0 -2.5 amino acid ABC transporter ATP-binding protein compare
RR42_RS29910 -1.0 -5.6 LacI family transcriptional regulator compare
RR42_RS14495 -1.0 -2.9 hypothetical protein compare
RR42_RS07990 -1.0 -2.1 integrase compare
RR42_RS33660 -1.0 -1.4 dihydrofolate reductase compare
RR42_RS07095 -1.0 -2.1 hypothetical protein compare


Specific Phenotypes

For 7 genes in this experiment

For carbon source 2-Deoxy-D-Ribose in Cupriavidus basilensis FW507-4G11

For carbon source 2-Deoxy-D-Ribose across organisms