Experiment set8IT069 for Phaeobacter inhibens DSM 17395

Compare to:

L-Methionine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c07110 +1.1 8.8 putative sodium/alanine symporter compare
PGA1_c27900 +1.1 4.9 ligand-binding UTRA domain-containing protein compare
PGA1_c06280 +1.0 2.0 cytochrome c oxidase assembly protein CtaG compare
PGA1_c01200 +1.0 4.6 putative phosphocarrier, HPr family compare
PGA1_65p00310 +1.0 2.9 GDP-mannose 4,6-dehydratase Gmd compare
PGA1_c23500 +0.8 7.2 phosphoenolpyruvate-protein phosphotransferase PtsP compare
PGA1_c02900 +0.8 1.8 putative molybdopterin-converting factor subunit 1 compare
PGA1_c01960 +0.8 3.3 putative hydrolase compare
PGA1_65p00350 +0.8 5.3 hemolysin-like protein compare
PGA1_262p01510 +0.8 2.0 sarcosine oxidase, delta subunit compare
PGA1_c07120 +0.7 3.0 putative universal stress protein compare
PGA1_c17030 +0.7 1.7 peptidoglycan binding domain-containing protein compare
PGA1_c07130 +0.7 4.8 putative leucine-responsive regulatory protein compare
PGA1_78p00560 +0.7 1.7 Uncharacterized conserved protein compare
PGA1_c11190 +0.7 2.2 hypothetical protein compare
PGA1_65p00160 +0.7 2.4 Bacterial putative lipoprotein (DUF940). compare
PGA1_c09410 +0.7 2.0 hypothetical protein compare
PGA1_c36300 +0.7 4.1 HTH-type transcriptional regulator, GntR family compare
PGA1_c33870 +0.7 4.1 putative HTH-type transcriptional regulator GntR compare
PGA1_65p00210 +0.7 1.7 hypothetical protein compare
PGA1_c26030 +0.6 1.6 transcriptional regulator, MarR family compare
PGA1_c16420 +0.6 1.5 putative phospholipase / carboxylesterase compare
PGA1_c24050 +0.6 1.6 hypothetical protein compare
PGA1_c31380 +0.6 2.2 hypothetical protein compare
PGA1_c29020 +0.6 2.4 hypothetical protein compare
PGA1_c03880 +0.6 5.3 putative transcriptional activator protein RaiR compare
PGA1_c04900 +0.6 1.6 peptidyl-tRNA hydrolase Pth compare
PGA1_c29740 +0.6 2.3 hypothetical protein compare
PGA1_c21030 +0.6 2.3 DoxX. compare
PGA1_c10060 +0.6 1.9 putative transcriptional regulator, MerR family compare
PGA1_c14760 +0.6 1.0 bifunctional enzyme IspDF compare
PGA1_c15050 +0.5 1.6 Uncharacterized enzyme involved in pigment biosynthesis compare
PGA1_c22240 +0.5 1.7 hypothetical protein compare
PGA1_c07510 +0.5 4.4 DNA/RNA helicase-like protein compare
PGA1_262p00460 +0.5 2.4 transcriptional regulator, MerR family compare
PGA1_c29320 +0.5 2.2 putative endoribonuclease L-PSP compare
PGA1_c27830 +0.5 3.2 hypothetical protein compare
PGA1_c06480 +0.5 1.0 hypothetical protein compare
PGA1_c17160 +0.5 1.4 Stress-induced morphogen (activity unknown) compare
PGA1_c21820 +0.5 2.0 5-formyltetrahydrofolate cycloligase-like protein compare
PGA1_c01940 +0.5 2.0 crcB-like protein compare
PGA1_c34940 +0.5 2.0 Putative sterol carrier protein compare
PGA1_262p01040 +0.5 2.4 periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP) compare
PGA1_c09900 +0.5 3.3 malate synthase GlcB compare
PGA1_78p00100 +0.5 0.9 flavohemoprotein Hmp compare
PGA1_c01160 +0.5 4.0 sensor protein ChvG compare
PGA1_262p01170 +0.5 2.3 putative nnrS protein compare
PGA1_c33170 +0.5 2.7 putative sensor protein compare
PGA1_65p00370 +0.5 1.5 putative glycosyl transferase compare
PGA1_65p00150 +0.5 1.7 Protein of unknown function (DUF2886). compare
PGA1_262p00770 +0.5 1.4 putative lytic murein transglycosylase compare
PGA1_78p00510 +0.5 1.3 multidrug transporter MdtB compare
PGA1_c24770 +0.5 1.2 putative leucine-responsive regulatory protein compare
PGA1_c14490 +0.5 1.1 Uncharacterized conserved small protein compare
PGA1_c20300 +0.5 3.5 aminotransferase compare
PGA1_c02850 +0.5 0.6 peptidase S49-like protein compare
PGA1_262p01390 +0.5 2.0 hypothetical protein compare
PGA1_c05730 +0.5 1.3 putative methylated-DNA--protein-cysteine methyltransferase compare
PGA1_262p02070 +0.5 1.4 hypothetical protein compare
PGA1_c01170 +0.5 2.9 HPr kinase/phosphorylase-like protein compare
PGA1_c20880 +0.5 2.2 molybdenum hydroxylase family protein, small subunit compare
PGA1_c12920 +0.4 1.7 nitrilotriacetate monooxygenase component B-like protein compare
PGA1_c02030 +0.4 1.3 phosphoglycerate mutase-like protein compare
PGA1_262p01410 +0.4 1.4 malate/L-lactate dehydrogenase-like protein compare
PGA1_262p01220 +0.4 2.0 nitric oxide reductase subunit B compare
PGA1_c02540 +0.4 2.6 Uncharacterized conserved protein compare
PGA1_c04790 +0.4 2.8 Clp protease. compare
PGA1_262p00960 +0.4 4.2 Prephenate dehydratase. compare
PGA1_c06020 +0.4 1.6 thioesterase domain-containing protein compare
PGA1_c19610 +0.4 1.5 Small integral membrane protein compare
PGA1_65p00340 +0.4 1.5 Sulfotransferase family. compare
PGA1_c11390 +0.4 1.6 putative ATP-dependent RNA helicase RhlE compare
PGA1_c30410 +0.4 0.8 HTH-type transcriptional regulator, AsnC family compare
PGA1_c12220 +0.4 1.6 monovalent cation/proton antiporter subunit G compare
PGA1_c10740 +0.4 1.9 Predicted ATPase (AAA+ superfamily) compare
PGA1_c19740 +0.4 1.8 hypothetical protein compare
PGA1_262p02000 +0.4 1.9 putative transcriptional regulator, LysR type compare
PGA1_c22510 +0.4 1.5 hypothetical protein compare
PGA1_c24320 +0.4 2.9 putative capsule polysaccharide export inner-membrane protein compare
PGA1_c36290 +0.4 2.6 putative phenylserine dehydratase compare
PGA1_c18850 +0.4 1.5 Antibiotic biosynthesis monooxygenase. compare
PGA1_c34690 +0.4 1.8 putative HTH-type transcriptional regulator, MarR family compare
PGA1_78p00490 +0.4 0.9 putative HTH-type transcriptional regulator compare
PGA1_c09750 +0.4 2.1 Uncharacterized protein conserved in bacteria compare
PGA1_c15100 +0.4 1.6 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ compare
PGA1_c10800 +0.4 1.1 Uncharacterized protein conserved in bacteria (DUF2199). compare
PGA1_c30100 +0.4 1.2 cytochrome c oxidase subunit 4 compare
PGA1_c31620 +0.4 2.0 Uncharacterized protein conserved in bacteria compare
PGA1_c09960 +0.4 1.7 putative transcriptional regulator, TetR family compare
PGA1_c23680 +0.4 1.7 putative transcriptional regulator, crp family compare
PGA1_c18510 +0.4 1.2 Protein of unknown function (DUF1064). compare
PGA1_c35660 +0.4 1.6 hypothetical protein compare
PGA1_c07710 +0.4 1.1 putative sulfopyruvate decarboxylase subunit alpha compare
PGA1_c14710 +0.4 1.1 hypoxanthine-guanine phosphoribosyltransferase Hpt compare
PGA1_262p00080 +0.4 1.5 hypothetical protein compare
PGA1_c18580 +0.4 1.3 hypothetical protein compare
PGA1_c07800 +0.4 2.5 putative transcriptional regulator, lacI family compare
PGA1_c05490 +0.4 1.5 ureidoglycolate hydrolase AllA compare
PGA1_c09180 +0.4 1.3 Protein of unknown function (DUF2478). compare
PGA1_78p00240 +0.4 0.9 Uncharacterized protein conserved in bacteria compare
PGA1_c12940 +0.4 1.6 adenylate kinase Adk compare
PGA1_262p01540 +0.4 1.2 putative enoyl-CoA hydratase / isomerase compare
PGA1_c03560 +0.4 2.6 Predicted membrane protein compare
PGA1_c25880 +0.4 2.3 putative DNA packaging phage protein compare
PGA1_c12290 +0.4 1.4 Poly(3-hydroxybutyrate) depolymerase compare
PGA1_c14190 +0.3 2.3 putative transcriptional regulator, AraC family compare
PGA1_c31990 +0.3 2.0 peptidase, family S58 compare
PGA1_c13620 +0.3 1.5 hypothetical protein compare
PGA1_c31930 +0.3 2.8 putative transporter, MFS family compare
PGA1_c14630 +0.3 2.1 trimethylamine methyltransferase MttB compare
PGA1_c11960 +0.3 1.5 uracil phosphoribosyltransferase Upp compare
PGA1_c11480 +0.3 1.4 Uncharacterized conserved protein compare
PGA1_c10730 +0.3 1.2 ribose-5-phosphate isomerase B compare
PGA1_c24680 +0.3 2.1 glyoxylate reductase GyaR compare
PGA1_c36270 +0.3 0.9 hypothetical protein compare
PGA1_c15590 +0.3 3.1 putative transcriptional activator protein compare
PGA1_78p00340 +0.3 0.6 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
PGA1_c34510 +0.3 2.5 hypothetical protein compare
PGA1_c17250 +0.3 2.1 glyceraldehyde-3-phosphate dehydrogenase 2 compare
PGA1_262p02160 +0.3 2.1 putative chemotaxis response regulator protein-glutamate methylesterase compare
PGA1_c27440 +0.3 2.0 alpha/beta hydrolase domain-containing protein compare
PGA1_c27010 +0.3 1.3 hypothetical protein compare
PGA1_c07910 +0.3 1.9 ABC-type Fe3+ transport system, periplasmic component compare
PGA1_78p00170 +0.3 0.8 putative sn-glycerol-3-phosphate transport system permease protein UgpA compare
PGA1_c23420 +0.3 2.9 Domain of unknown function. compare
PGA1_c10260 +0.3 2.3 putative pyridoxal-phosphate-dependent aminotransferase compare
PGA1_c29060 +0.3 0.7 HTH-type transcriptional regulator PecS compare
PGA1_c05190 +0.3 2.3 ABC transporter, inner membrane component compare
PGA1_c01060 +0.3 1.1 ribonuclease 3 compare
PGA1_c28830 +0.3 1.6 sulfite exporter tauE/safE-like protein compare
PGA1_c24310 +0.3 2.0 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c34670 +0.3 2.4 proline iminopeptidase Pip compare
PGA1_c23270 +0.3 2.0 amino acid transport sytem, ATP-binding protein compare
PGA1_c04080 +0.3 2.1 phenylacetic acid degradation protein PaaA compare
PGA1_c33850 +0.3 1.8 ATP-dependent Lon protease, bacterial type compare
PGA1_262p01740 +0.3 1.7 putative peptide ABC transporter, ATP-binding protein compare
PGA1_c30230 +0.3 2.6 2',3'-cyclic-nucleotide 2'-phosphodiesterase CpdB compare
PGA1_c23590 +0.3 1.2 hypothetical protein compare
PGA1_c16390 +0.3 1.2 ornithine cyclodeaminase ArcB compare
PGA1_c33200 +0.3 1.7 putative serine-protein kinase (anti-sigma-B factor) compare
PGA1_c11610 +0.3 1.4 Uncharacterized protein conserved in bacteria compare
PGA1_262p01120 +0.3 0.8 hypothetical protein compare
PGA1_c14130 +0.3 1.4 transglycolase-like protein compare
PGA1_c05180 +0.3 1.3 Predicted small integral membrane protein compare
PGA1_c07650 +0.3 2.2 hypothetical protein compare
PGA1_c04110 +0.3 1.7 putative fatty acid oxidation complex subunit alpha compare
PGA1_78p00110 +0.3 0.7 putative transporter, MFS family compare
PGA1_262p01000 +0.3 1.3 dipeptide transport ATP-binding protein DppF compare
PGA1_c23330 +0.3 1.9 putative N-formylglutamate amidohydrolase compare
PGA1_c28810 +0.3 2.1 transcriptional regulator, GntR family compare
PGA1_c08590 +0.3 2.1 heme NO binding domain-containing protein compare
PGA1_c18160 +0.3 1.0 trigger factor Tig compare
PGA1_c21050 +0.3 1.5 glutaredoxin-like protein compare
PGA1_c15710 +0.3 1.2 acyl-CoA dehydrogenase compare
PGA1_c12550 +0.3 1.1 hypothetical protein compare
PGA1_c29290 +0.3 1.2 putative pterin 4 alpha carbinolamine dehydratase compare
PGA1_c07140 +0.3 2.3 putative methylamine utilization protein MauG compare
PGA1_c14530 +0.3 0.4 transcriptional regulator, TetR family compare
PGA1_c18380 +0.3 0.6 Phage Head-Tail Attachment. compare
PGA1_c35740 +0.3 1.5 hypothetical protein compare
PGA1_c08450 +0.3 0.9 Predicted membrane protein (DUF2061). compare
PGA1_c12300 +0.3 1.9 glucans biosynthesis glucosyltransferase H compare
PGA1_c02570 +0.3 1.7 putative 4-carboxymuconolactone decarboxylase PcaC compare
PGA1_c35770 +0.3 0.5 putative flagella basal body P-ring formation protein FlgA compare
PGA1_c14700 +0.3 1.1 hypothetical protein compare
PGA1_c25410 +0.3 2.0 putative transcriptional regulator, LysR family compare
PGA1_c29440 +0.3 1.5 hypothetical protein compare
PGA1_c18040 +0.3 1.9 Short-chain alcohol dehydrogenase of unknown specificity compare
PGA1_c15630 +0.3 1.6 putative aminoglycoside phosphotransferase compare
PGA1_262p01370 +0.3 1.6 putative dioxygenase compare
PGA1_c22560 +0.3 1.6 hypothetical protein compare
PGA1_c16550 +0.3 1.9 putative branched-chain amino acid transport system, permease component compare
PGA1_262p00870 +0.3 1.4 ABC transporter, extracellular solute-binding protein compare
PGA1_c34120 +0.3 0.5 HTH-type transcriptional regulator PetP compare
PGA1_c23800 +0.3 1.7 hypothetical protein compare
PGA1_c12640 +0.3 1.4 D-lactate transporter, ATP-binding component (from data) compare
PGA1_c34850 +0.3 0.6 putative NUDIX hydrolase compare
PGA1_c02990 +0.3 1.2 hypothetical protein compare
PGA1_c13110 +0.3 0.9 putative nitrilotriacetate monooxygenase component B compare
PGA1_c17450 +0.3 1.4 Uncharacterized protein conserved in bacteria compare
PGA1_262p02360 +0.3 0.9 putative histidine-binding periplasmic protein compare
PGA1_c17260 +0.3 0.7 hypothetical protein compare
PGA1_c04180 +0.3 1.7 phosphonates import ATP-binding protein PhnC compare
PGA1_c25850 +0.3 1.5 hypothetical protein compare
PGA1_c16410 +0.3 1.4 ribosomal large subunit pseudouridine synthase E compare
PGA1_c14740 +0.3 1.2 competence/damage-inducible protein CinA C-terminal domain compare
PGA1_c12320 +0.3 1.4 Uncharacterized protein conserved in bacteria compare
PGA1_c15850 +0.3 1.7 Uncharacterized protein conserved in bacteria compare
PGA1_c05890 +0.3 1.4 thioesterase domain-containing protein compare
PGA1_c05640 +0.3 1.5 hypothetical protein compare
PGA1_c02170 +0.3 1.6 Uncharacterized conserved protein compare
PGA1_c22250 +0.3 0.9 hypothetical protein compare
PGA1_c07465 +0.3 1.4 putative dksA/traR C4-type zinc finger protein compare
PGA1_c14640 +0.3 0.8 hypothetical protein compare
PGA1_c03580 +0.3 2.4 hypothetical protein compare
PGA1_c04620 +0.3 1.2 peptidyl-prolyl cis-trans isomerase, FKBP-type compare
PGA1_c16240 +0.3 1.4 methylthioribose-1-phosphate isomerase MtnA compare
PGA1_c04800 +0.3 1.7 tRNA (guanine-N(7)-)-methyltransferase TrmB compare
PGA1_c27750 +0.3 1.6 ABC-type tungstate transport system, permease component compare
PGA1_c11760 +0.3 1.3 putative proline dehydrogenase transcriptional activator compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Methionine in Phaeobacter inhibens DSM 17395

For nitrogen source L-Methionine across organisms