Experiment set8IT069 for Shewanella oneidensis MR-1

Compare to:

LB - with RNA protect

200 most detrimental genes:

  gene name fitness t score description  
SO2712 +3.8 9.2 hypothetical protein (NCBI ptt file) compare
SO0611 sspA +2.5 6.1 stringent starvation protein a (NCBI ptt file) compare
SO2899 cysZ +2.5 15.5 cysZ protein (NCBI ptt file) compare
SO2960 +2.2 10.2 conserved hypothetical protein (NCBI ptt file) compare
SO2938 +2.0 11.2 hypothetical protein (NCBI ptt file) compare
SO2955 +1.9 4.0 conserved hypothetical protein (NCBI ptt file) compare
SO2949 +1.9 8.6 prophage LambdaSo, minor tail protein L (NCBI ptt file) compare
SO2969 +1.8 6.3 prophage LambdaSo, holin, putative (NCBI ptt file) compare
SO2956 +1.7 6.4 prophage LambdaSo, major tail protein V, putative (NCBI ptt file) compare
SO_3457 +1.7 11.7 hybrid sensory histidine kinase BarA (RefSeq) compare
SO2947 +1.6 4.5 hypothetical protein (NCBI ptt file) compare
SO2958 +1.6 6.7 conserved hypothetical protein (NCBI ptt file) compare
SO1860 +1.5 5.1 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO2957 +1.4 6.4 conserved hypothetical protein (NCBI ptt file) compare
SO2668 +1.4 7.6 prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file) compare
SO2954 +1.4 2.6 hypothetical protein (NCBI ptt file) compare
SO2665 +1.4 4.0 hypothetical protein (NCBI ptt file) compare
SO2656 +1.4 3.7 hypothetical protein (NCBI ptt file) compare
SO2953 H +1.4 9.6 prophage LambdaSo, tail length tape meausure protein (NCBI ptt file) compare
SO2746 +1.3 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO2699 +1.3 6.7 prophage MuSo2, 43 kDa tail protein, putative (NCBI ptt file) compare
SO2940 +1.3 11.7 prophage LambdaSo, host specificity protein J, putative (NCBI ptt file) compare
SO4368 +1.2 5.4 acyl carrier protein, putative (NCBI ptt file) compare
SO2946 +1.2 8.9 hypothetical protein (NCBI ptt file) compare
SO2939 +1.2 7.9 hypothetical protein (NCBI ptt file) compare
SO2948 +1.2 4.8 prophage LambdaSo, tail assembly protein K, putative (NCBI ptt file) compare
SO2962 +1.2 2.9 hypothetical protein (NCBI ptt file) compare
SO2998 +1.1 2.5 hypothetical protein (NCBI ptt file) compare
SO2941 +1.1 6.2 prophage LambdaSo, tail assembly protein I (NCBI ptt file) compare
SO2942 +1.1 4.3 hypothetical protein (NCBI ptt file) compare
SO2965 +1.1 7.1 prophage LambdaSo, portal protein, HK97 family (NCBI ptt file) compare
SO2945 +1.1 7.1 hypothetical protein (NCBI ptt file) compare
SO2973 +1.1 5.3 prophage LambdaSo, lysozyme, putative (NCBI ptt file) compare
SO2952 +1.1 5.5 prophage LambdaSo, minor tail protein M, putative (NCBI ptt file) compare
SO2951 +1.1 9.2 hypothetical protein (NCBI ptt file) compare
SO1062 def-2 +1.1 1.7 polypeptide deformylase (NCBI ptt file) compare
SO2695 +1.1 7.7 conserved hypothetical protein (NCBI ptt file) compare
SO2944 +1.1 7.9 hypothetical protein (NCBI ptt file) compare
SO2672 +1.1 6.1 conserved hypothetical protein (NCBI ptt file) compare
SO2686 +1.1 6.0 hypothetical protein (NCBI ptt file) compare
SO2992 +1.0 5.8 hypothetical protein (NCBI ptt file) compare
SO2661 +1.0 3.6 hypothetical protein (NCBI ptt file) compare
SO2974 +1.0 4.9 hypothetical protein (NCBI ptt file) compare
SO2999 +1.0 1.6 hypothetical protein (NCBI ptt file) compare
SO2700 +1.0 5.0 prophage MuSo2, baseplate assembly protein V (NCBI ptt file) compare
SO3003 +1.0 3.2 hypothetical protein (NCBI ptt file) compare
SO2950 +1.0 7.0 hypothetical protein (NCBI ptt file) compare
SO2245 dnaQ-1 +1.0 1.5 DNA polymerase III, epsilon subunit (NCBI ptt file) compare
SO0559 +1.0 4.7 MaoC domain protein (NCBI ptt file) compare
SO2676 +1.0 5.3 conserved hypothetical protein (NCBI ptt file) compare
SO2959 +1.0 4.3 hypothetical protein (NCBI ptt file) compare
SO2673 +1.0 5.2 hypothetical protein (NCBI ptt file) compare
SO2691 +1.0 4.1 hypothetical protein (NCBI ptt file) compare
SO2968 +1.0 4.8 hypothetical phage terminase, small subunit (NCBI ptt file) compare
SO2663 +1.0 5.5 conserved hypothetical protein (NCBI ptt file) compare
SO2964 +1.0 5.2 ClpP protease family protein (NCBI ptt file) compare
SO1570 +1.0 6.1 GGDEF domain protein (NCBI ptt file) compare
SO2976 +1.0 4.6 conserved hypothetical protein (NCBI ptt file) compare
SO2684 +1.0 5.4 prophage MuSo2, protein Gp32, putative (NCBI ptt file) compare
SO2698 +1.0 6.5 prophage MuSo2, DNA circulation protein, putative (NCBI ptt file) compare
SO1372 +1.0 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO3819.1 +1.0 2.7 hypothetical ammonia permease (NCBI ptt file) compare
SO2995 +1.0 4.4 hypothetical protein (NCBI ptt file) compare
SO2669 +1.0 5.7 hypothetical protein (NCBI ptt file) compare
SO2679 +0.9 6.0 prophage MuSo2, portal protein, putative (NCBI ptt file) compare
SO3002 +0.9 4.6 conserved hypothetical protein (NCBI ptt file) compare
SO2677 +0.9 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3374.1 +0.9 1.0 hypothetical protein (NCBI ptt file) compare
SO1379 +0.9 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO1960 +0.9 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO2666 +0.9 4.6 hypothetical protein (NCBI ptt file) compare
SO2693 +0.9 6.4 prophage MuSo2, tail sheath protein, putative (NCBI ptt file) compare
SO_3141 +0.9 1.9 no description compare
SO2701 +0.9 5.1 conserved hypothetical protein (NCBI ptt file) compare
SO2697 +0.9 7.8 conserved hypothetical protein (NCBI ptt file) compare
SO3151 +0.9 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO2972 +0.9 5.9 hypothetical protein (NCBI ptt file) compare
SO2667 +0.9 5.4 conserved hypothetical protein (NCBI ptt file) compare
SO2975 +0.9 6.3 hypothetical protein (NCBI ptt file) compare
SO2982 +0.9 5.2 hypothetical protein (NCBI ptt file) compare
SO2979 +0.8 6.0 hypothetical protein (NCBI ptt file) compare
SO1662 +0.8 3.8 hypothetical Ccm2-related protein (NCBI ptt file) compare
SO1320 +0.8 2.0 hypothetical protein (NCBI ptt file) compare
SO4577 +0.8 1.6 conserved domain protein (NCBI ptt file) compare
SO2660 +0.8 3.8 conserved hypothetical protein (NCBI ptt file) compare
SO3254 flgM +0.8 2.6 negative regulator of flagellin synthesis FlgM (NCBI ptt file) compare
SO3351 pilT +0.8 4.2 twitching motility protein PilT (NCBI ptt file) compare
SO2664 +0.8 4.3 hypothetical protein (NCBI ptt file) compare
SO2967 +0.8 5.4 hypothetical phage terminase large subunit (NCBI ptt file) compare
SO3853 +0.8 1.5 hypothetical protein (NCBI ptt file) compare
SO3748 +0.8 4.9 LysM domain protein (NCBI ptt file) compare
SO3736 cysH +0.8 0.8 phosphoadenosine phosphosulfate reductase (NCBI ptt file) compare
SO3000 +0.8 3.2 conserved hypothetical protein (NCBI ptt file) compare
SO2703 +0.8 3.9 conserved hypothetical protein (NCBI ptt file) compare
SO2319 +0.8 3.0 anti-anti-sigma factor, putative (NCBI ptt file) compare
SO1166 +0.8 2.1 membrane-bound lytic transglycosylase, putative (NCBI ptt file) compare
SO2971 +0.8 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO2977 +0.8 4.4 hypothetical protein (NCBI ptt file) compare
SO2702 +0.8 3.6 conserved hypothetical protein (NCBI ptt file) compare
SO2943 +0.8 2.2 conserved domain protein (NCBI ptt file) compare
SO_A0176 +0.8 5.0 hypothetical protein (NCBI) compare
SO1169 +0.8 2.4 conserved hypothetical protein TIGR00246 (NCBI ptt file) compare
SO3087 +0.7 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO2970 +0.7 3.1 hypothetical protein (NCBI ptt file) compare
SO3004 +0.7 4.5 prophage LambdaSo, DNA modification methyltransferase, putative (NCBI ptt file) compare
SO2689 +0.7 3.4 conserved hypothetical protein (NCBI ptt file) compare
SO0624 crp +0.7 3.3 catabolite gene activator (NCBI ptt file) compare
SO2974.1 +0.7 4.6 hypothetical protein (NCBI ptt file) compare
SO1329 +0.7 3.5 adenylate cyclase-related protein (NCBI ptt file) compare
SO2681 +0.7 4.8 prophage MuSo2, F protein, putative (NCBI ptt file) compare
SO1794 clpP +0.7 1.7 ATP-dependent Clp protease, proteolytic subunit (NCBI ptt file) compare
SO0700 +0.7 1.2 hypothetical protein (NCBI ptt file) compare
SO0216 +0.7 0.9 hypothetical protein (NCBI ptt file) compare
SO3983 +0.7 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO2690 +0.7 3.7 prophage MuSo2, virion morphogenesis protein, putative (NCBI ptt file) compare
SO2694 +0.7 3.2 conserved hypothetical protein (NCBI ptt file) compare
SO4250 dut +0.7 3.5 deoxyuridine 5'-triphosphate nucleotidohydrolase (NCBI ptt file) compare
SO1697 +0.7 2.4 hypothetical protein (NCBI ptt file) compare
SO0467 uvrD +0.7 2.5 DNA helicase II (NCBI ptt file) compare
SO2671 +0.7 4.7 conserved hypothetical protein (NCBI ptt file) compare
SO2688 +0.7 4.0 hypothetical protein (NCBI ptt file) compare
SO2991 +0.7 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO0173 gspK +0.7 1.9 general secretion pathway protein K (NCBI ptt file) compare
SO2704 +0.7 5.0 prophage MuSo2, tail fiber protein, putative (NCBI ptt file) compare
SO0448 +0.7 1.9 hypothetical protein (NCBI ptt file) compare
SO2680 +0.7 4.3 conserved hypothetical protein (NCBI ptt file) compare
SO2356 etrA +0.7 3.0 electron transport regulator a (NCBI ptt file) compare
SO3001 +0.7 2.8 hypothetical protein (NCBI ptt file) compare
SO2983 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
SO3159 +0.7 4.5 conserved hypothetical protein (NCBI ptt file) compare
SO3676 +0.7 1.0 hypothetical protein (NCBI ptt file) compare
SO3157 +0.7 3.9 lipoprotein, putative (NCBI ptt file) compare
SO2987 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
SO2659 +0.7 2.0 hypothetical protein (NCBI ptt file) compare
SO2981 +0.7 3.2 hypothetical protein (NCBI ptt file) compare
SO1806 pspF +0.6 3.7 psp operon transcriptional activator (NCBI ptt file) compare
SO4007 +0.6 2.1 predicted chromosome partitioning protein (with smc-like SO4008) (from data) compare
SO3850 +0.6 2.4 hypothetical protein (NCBI ptt file) compare
SO1669 tyrR +0.6 3.4 transcriptional regulatory protein TyrR (NCBI ptt file) compare
SO3005 +0.6 2.8 conserved hypothetical protein (NCBI ptt file) compare
SO2997 +0.6 1.4 hypothetical protein (NCBI ptt file) compare
SO2713 +0.6 0.9 transporter, putative (NCBI ptt file) compare
SO3275 +0.6 2.8 hypothetical protein (NCBI ptt file) compare
SO0775 +0.6 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO2678 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
SO2110 +0.6 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO2797 +0.6 2.1 conserved hypothetical protein (NCBI ptt file) compare
SOA0010 +0.6 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO2988 +0.6 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO3192 +0.6 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO4304 +0.6 3.3 conserved hypothetical protein (NCBI ptt file) compare
SO1213 +0.6 1.4 hydrolase, TatD family (NCBI ptt file) compare
SO_A0111 +0.6 1.0 no description compare
SO_A0174 +0.6 1.8 hypothetical protein (NCBI) compare
SO1817 +0.6 0.6 primosomal replication protein n'', putative (NCBI ptt file) compare
SO3164 +0.6 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO3172 +0.6 1.8 galactosyl transferase (NCBI ptt file) compare
SO2687 +0.6 1.8 hypothetical protein (NCBI ptt file) compare
SO_2233 +0.6 1.1 no description compare
SO3964 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO4251 +0.6 1.7 transcriptional regulator, TetR family (NCBI ptt file) compare
SO2277 ibpA +0.6 1.5 16 kDa heat shock protein A (NCBI ptt file) compare
SO3006 +0.6 3.7 prophage LambdaSo, type II DNA modification methyltransferase, putative (NCBI ptt file) compare
SO4370 +0.6 2.5 membrane protein, putative (NCBI ptt file) compare
SO_2993 +0.6 2.4 no description compare
SO2739.1 +0.6 0.9 hypothetical protein (NCBI ptt file) compare
SO0411 +0.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO0306 +0.5 3.9 hypothetical protein (NCBI ptt file) compare
SO4423 +0.5 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO3471 glyA +0.5 2.7 serine hydroxymethyltransferase (NCBI ptt file) compare
SO2577 minD +0.5 2.4 septum site-determining protein MinD (NCBI ptt file) compare
SO0299 +0.5 1.7 conserved hypothetical protein TIGR00252 (NCBI ptt file) compare
SO0650 +0.5 2.5 hypothetical protein (NCBI ptt file) compare
SO2685 +0.5 2.4 prophage MuSo2, major head subunit, putative (NCBI ptt file) compare
SO0340 ilvE +0.5 1.2 branched-chain amino acid aminotransferase (NCBI ptt file) compare
SO2472 +0.5 0.9 D-alanyl-D-alanine carboxypeptidase-related protein (NCBI ptt file) compare
SO1152 +0.5 0.7 hypothetical protein (NCBI ptt file) compare
SO1908 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
SO3112 yajC +0.5 1.1 preprotein translocase, YajC subunit (NCBI ptt file) compare
SO2254 +0.5 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO1455 +0.5 1.9 DNA repair protein, RadC family (NCBI ptt file) compare
SO0844 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
SO2181 +0.5 0.8 hypothetical protein (NCBI ptt file) compare
SO4374 +0.5 3.2 histidine ammonia-lyase, putative (NCBI ptt file) compare
SO3596 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO2467.1 +0.5 1.0 hypothetical UV repair DNA polymerase (NCBI ptt file) compare
SO2113 +0.5 3.0 conserved hypothetical protein (NCBI ptt file) compare
SO2675 +0.5 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO1350 recO +0.5 1.3 DNA repair protein RecO (NCBI ptt file) compare
SO1899 +0.5 3.0 conserved hypothetical protein (NCBI ptt file) compare
SO3328 +0.5 1.5 acetyltransferase, GNAT family (NCBI ptt file) compare
SO2989 +0.5 1.6 prophage LambdaSo, transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO0190 +0.5 0.9 MutT/nudix family protein (NCBI ptt file) compare
SO2061 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
SO1796 lon +0.5 1.6 ATP-dependent protease La (NCBI ptt file) compare
SO0174 gspL +0.5 2.0 general secretion pathway protein L (NCBI ptt file) compare
SO0167 gspE +0.5 2.1 general secretion pathway protein E (NCBI ptt file) compare
SO1946 phoP +0.5 2.0 transcriptional regulatory protein PhoP (NCBI ptt file) compare
SO2670 +0.5 3.1 hypothetical protein (NCBI ptt file) compare
SO2435 +0.5 1.2 methyltransferase, putative (NCBI ptt file) compare


Specific Phenotypes

For 16 genes in this experiment