Experiment set8IT068 for Shewanella oneidensis MR-1

Compare to:

LB - with RNA protect

200 most detrimental genes:

  gene name fitness t score description  
SO2712 +3.1 7.1 hypothetical protein (NCBI ptt file) compare
SO2899 cysZ +2.2 14.5 cysZ protein (NCBI ptt file) compare
SO2960 +2.0 9.6 conserved hypothetical protein (NCBI ptt file) compare
SO2938 +1.7 8.6 hypothetical protein (NCBI ptt file) compare
SO2956 +1.6 7.9 prophage LambdaSo, major tail protein V, putative (NCBI ptt file) compare
SO2955 +1.6 6.8 conserved hypothetical protein (NCBI ptt file) compare
SO2986 +1.6 2.0 hypothetical protein (NCBI ptt file) compare
SO_3457 +1.6 10.1 hybrid sensory histidine kinase BarA (RefSeq) compare
SO1860 +1.6 6.8 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO2957 +1.5 7.7 conserved hypothetical protein (NCBI ptt file) compare
SO2948 +1.5 8.9 prophage LambdaSo, tail assembly protein K, putative (NCBI ptt file) compare
SO2658 +1.4 2.3 hypothetical protein (NCBI ptt file) compare
SO2958 +1.4 5.1 conserved hypothetical protein (NCBI ptt file) compare
SO2949 +1.3 4.8 prophage LambdaSo, minor tail protein L (NCBI ptt file) compare
SO3853 +1.3 2.4 hypothetical protein (NCBI ptt file) compare
SO2939 +1.3 7.8 hypothetical protein (NCBI ptt file) compare
SO2947 +1.2 3.5 hypothetical protein (NCBI ptt file) compare
SO2713 +1.2 2.0 transporter, putative (NCBI ptt file) compare
SO3002 +1.2 4.4 conserved hypothetical protein (NCBI ptt file) compare
SO2940 +1.2 9.4 prophage LambdaSo, host specificity protein J, putative (NCBI ptt file) compare
SO2953 H +1.1 7.3 prophage LambdaSo, tail length tape meausure protein (NCBI ptt file) compare
SO2969 +1.1 3.9 prophage LambdaSo, holin, putative (NCBI ptt file) compare
SO2941 +1.1 6.4 prophage LambdaSo, tail assembly protein I (NCBI ptt file) compare
SO2669 +1.1 7.7 hypothetical protein (NCBI ptt file) compare
SO2684 +1.1 5.8 prophage MuSo2, protein Gp32, putative (NCBI ptt file) compare
SO2952 +1.1 5.6 prophage LambdaSo, minor tail protein M, putative (NCBI ptt file) compare
SO2673 +1.1 4.4 hypothetical protein (NCBI ptt file) compare
SO2971 +1.1 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO2983 +1.0 3.3 hypothetical protein (NCBI ptt file) compare
SO2970 +1.0 3.7 hypothetical protein (NCBI ptt file) compare
SO2665 +1.0 3.1 hypothetical protein (NCBI ptt file) compare
SO2695 +1.0 7.0 conserved hypothetical protein (NCBI ptt file) compare
SO2992 +1.0 5.7 hypothetical protein (NCBI ptt file) compare
SO2685 +1.0 4.8 prophage MuSo2, major head subunit, putative (NCBI ptt file) compare
SO2945 +1.0 7.6 hypothetical protein (NCBI ptt file) compare
SO2972 +1.0 6.2 hypothetical protein (NCBI ptt file) compare
SO2268 hscA +1.0 2.4 chaperone protein HscA (NCBI ptt file) compare
SO2943 +1.0 3.6 conserved domain protein (NCBI ptt file) compare
SO2946 +1.0 7.6 hypothetical protein (NCBI ptt file) compare
SO2965 +0.9 6.2 prophage LambdaSo, portal protein, HK97 family (NCBI ptt file) compare
SO2476 +0.9 2.9 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO1570 +0.9 6.1 GGDEF domain protein (NCBI ptt file) compare
SO1372 +0.9 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO2974 +0.9 5.6 hypothetical protein (NCBI ptt file) compare
SO2951 +0.9 7.7 hypothetical protein (NCBI ptt file) compare
SO2668 +0.9 4.6 prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file) compare
SO1062 def-2 +0.9 2.3 polypeptide deformylase (NCBI ptt file) compare
SO2238 ptsH +0.9 1.4 phosphocarrier protein HPr (NCBI ptt file) compare
SO2977 +0.9 5.1 hypothetical protein (NCBI ptt file) compare
SO2680 +0.9 5.7 conserved hypothetical protein (NCBI ptt file) compare
SO2693 +0.9 5.9 prophage MuSo2, tail sheath protein, putative (NCBI ptt file) compare
SOA0104 +0.9 4.4 hypothetical protein (NCBI ptt file) compare
SO2698 +0.9 5.7 prophage MuSo2, DNA circulation protein, putative (NCBI ptt file) compare
SO2964 +0.9 5.5 ClpP protease family protein (NCBI ptt file) compare
SO2995 +0.9 3.8 hypothetical protein (NCBI ptt file) compare
SO2666 +0.9 5.6 hypothetical protein (NCBI ptt file) compare
SO2968 +0.9 4.1 hypothetical phage terminase, small subunit (NCBI ptt file) compare
SO2699 +0.9 4.8 prophage MuSo2, 43 kDa tail protein, putative (NCBI ptt file) compare
SO2700 +0.9 2.5 prophage MuSo2, baseplate assembly protein V (NCBI ptt file) compare
SO3000 +0.9 4.4 conserved hypothetical protein (NCBI ptt file) compare
SO2417 +0.9 1.4 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO2838 +0.9 1.6 ATP-dependent RNA helicase, DEAD box family (NCBI ptt file) compare
SO1960 +0.9 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2686 +0.8 4.2 hypothetical protein (NCBI ptt file) compare
SO2697 +0.8 7.4 conserved hypothetical protein (NCBI ptt file) compare
SO2975 +0.8 5.7 hypothetical protein (NCBI ptt file) compare
SO2988 +0.8 3.8 conserved hypothetical protein (NCBI ptt file) compare
SO2976 +0.8 4.7 conserved hypothetical protein (NCBI ptt file) compare
SO2664 +0.8 3.8 hypothetical protein (NCBI ptt file) compare
SO2663 +0.8 5.0 conserved hypothetical protein (NCBI ptt file) compare
SO2702 +0.8 3.5 conserved hypothetical protein (NCBI ptt file) compare
SO2220 +0.8 1.9 MutT/nudix family protein (NCBI ptt file) compare
SO2944 +0.8 6.3 hypothetical protein (NCBI ptt file) compare
SO2682 +0.8 2.2 hypothetical protein (NCBI ptt file) compare
SO2694 +0.8 3.6 conserved hypothetical protein (NCBI ptt file) compare
SO4409 +0.8 1.8 hypothetical protein (NCBI ptt file) compare
SO_3141 +0.8 1.7 no description compare
SO2297 +0.8 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO2670 +0.8 5.2 hypothetical protein (NCBI ptt file) compare
SO0689 +0.8 2.1 hypothetical protein (NCBI ptt file) compare
SO2991 +0.8 3.9 conserved hypothetical protein (NCBI ptt file) compare
SO2659 +0.8 3.4 hypothetical protein (NCBI ptt file) compare
SO0638 +0.8 3.1 hypothetical protein (NCBI ptt file) compare
SO2423 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
SO0309 +0.8 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO3158 +0.8 2.2 polysaccharide synthesis-related protein (NCBI ptt file) compare
SO2277 ibpA +0.8 2.6 16 kDa heat shock protein A (NCBI ptt file) compare
SO2688 +0.8 3.9 hypothetical protein (NCBI ptt file) compare
SO2679 +0.8 5.3 prophage MuSo2, portal protein, putative (NCBI ptt file) compare
SO3004 +0.8 5.3 prophage LambdaSo, DNA modification methyltransferase, putative (NCBI ptt file) compare
SO2982 +0.8 4.6 hypothetical protein (NCBI ptt file) compare
SO3172 +0.8 1.0 galactosyl transferase (NCBI ptt file) compare
SO2678 +0.8 2.8 hypothetical protein (NCBI ptt file) compare
SO2974.1 +0.8 4.7 hypothetical protein (NCBI ptt file) compare
SO2950 +0.7 4.1 hypothetical protein (NCBI ptt file) compare
SO3623 +0.7 2.1 tetraheme cytochrome c (NCBI ptt file) compare
SO2661 +0.7 2.8 hypothetical protein (NCBI ptt file) compare
SO2973 +0.7 3.2 prophage LambdaSo, lysozyme, putative (NCBI ptt file) compare
SO2667 +0.7 4.8 conserved hypothetical protein (NCBI ptt file) compare
SO2967 +0.7 4.8 hypothetical phage terminase large subunit (NCBI ptt file) compare
SO0611 sspA +0.7 1.3 stringent starvation protein a (NCBI ptt file) compare
SO2677 +0.7 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO4585 ftsE +0.7 3.1 cell division ABC transporter, ATP-binding protein FtsE (NCBI ptt file) compare
SO2676 +0.7 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO3005 +0.7 4.2 conserved hypothetical protein (NCBI ptt file) compare
SO2703 +0.7 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO2704 +0.7 4.8 prophage MuSo2, tail fiber protein, putative (NCBI ptt file) compare
SO1855 rmf +0.7 1.4 ribosome modulation factor (NCBI ptt file) compare
SO3351 pilT +0.7 3.2 twitching motility protein PilT (NCBI ptt file) compare
SO1835 +0.7 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO1298.4 +0.7 2.9 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO1295 +0.7 1.8 major outer membrane lipoprotein, putative (NCBI ptt file) compare
SO2474 +0.7 0.8 carbonic anhydrase family protein (NCBI ptt file) compare
SO3886 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
SO3459 +0.7 1.0 hypothetical protein (NCBI ptt file) compare
SO2690 +0.7 3.4 prophage MuSo2, virion morphogenesis protein, putative (NCBI ptt file) compare
SO0559 +0.7 2.6 MaoC domain protein (NCBI ptt file) compare
SO2981 +0.7 2.3 hypothetical protein (NCBI ptt file) compare
SO3203 +0.7 1.2 CheW domain protein (NCBI ptt file) compare
SO0881 +0.7 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3062 +0.7 1.3 hypothetical protein (NCBI ptt file) compare
SO1669 tyrR +0.7 3.5 transcriptional regulatory protein TyrR (NCBI ptt file) compare
SO2153.1 +0.7 2.1 hypothetical transposase (NCBI ptt file) compare
SO2671 +0.7 4.6 conserved hypothetical protein (NCBI ptt file) compare
SO2962 +0.6 2.5 hypothetical protein (NCBI ptt file) compare
SO2430 ruvA +0.6 0.8 Holliday junction DNA helicase RuvA (NCBI ptt file) compare
SO3748 +0.6 3.4 LysM domain protein (NCBI ptt file) compare
SO1806 pspF +0.6 3.8 psp operon transcriptional activator (NCBI ptt file) compare
SO2979 +0.6 4.3 hypothetical protein (NCBI ptt file) compare
SO2681 +0.6 3.8 prophage MuSo2, F protein, putative (NCBI ptt file) compare
SO2101 +0.6 0.8 lipoprotein, putative (NCBI ptt file) compare
SO2381 +0.6 1.2 hypothetical protein (NCBI ptt file) compare
SO2998 +0.6 1.4 hypothetical protein (NCBI ptt file) compare
SO2701 +0.6 3.2 conserved hypothetical protein (NCBI ptt file) compare
SO0603 hfq +0.6 0.6 host factor-I protein (NCBI ptt file) compare
SO1697 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
SO2672 +0.6 2.5 conserved hypothetical protein (NCBI ptt file) compare
SO1702 +0.6 1.7 hypothetical protein (NCBI ptt file) compare
SO0306 +0.6 4.3 hypothetical protein (NCBI ptt file) compare
SO4007 +0.6 1.6 predicted chromosome partitioning protein (with smc-like SO4008) (from data) compare
SO1728 +0.6 2.0 hypothetical protein (NCBI ptt file) compare
SO_2993 +0.6 2.3 no description compare
SO_A0176 +0.6 4.3 hypothetical protein (NCBI) compare
SO1250 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO4685 +0.6 3.1 conserved hypothetical protein (NCBI ptt file) compare
SO2691 +0.6 2.1 hypothetical protein (NCBI ptt file) compare
SOA0014 +0.6 2.3 hypothetical protein (NCBI ptt file) compare
SO0624 crp +0.6 2.4 catabolite gene activator (NCBI ptt file) compare
SO3964 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO3029 +0.6 1.0 hypothetical protein (NCBI ptt file) compare
SO2687 +0.6 2.1 hypothetical protein (NCBI ptt file) compare
SO3217 fliQ +0.6 1.7 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO3254 flgM +0.6 2.1 negative regulator of flagellin synthesis FlgM (NCBI ptt file) compare
SO1329 +0.6 2.7 adenylate cyclase-related protein (NCBI ptt file) compare
SO1409 +0.6 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO1169 +0.6 1.7 conserved hypothetical protein TIGR00246 (NCBI ptt file) compare
SO1746 +0.6 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO3364 +0.6 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO3224 fliJ +0.6 2.7 flagellar protein FliJ (NCBI ptt file) compare
SO3215 flhB +0.6 2.6 flagellar biosynthetic protein FlhB (NCBI ptt file) compare
SO3382 +0.6 3.0 oxidoreductase, short-chain dehydrogenase/reductase family (NCBI ptt file) compare
SO3001 +0.6 2.3 hypothetical protein (NCBI ptt file) compare
SO0041 +0.6 2.8 conserved hypothetical protein (NCBI ptt file) compare
SO3983 +0.6 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO1379 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO_3450 +0.5 1.5 no description compare
SO1809 pspC +0.5 2.1 phage shock protein C (NCBI ptt file) compare
SO0447 +0.5 2.2 hypothetical protein (NCBI ptt file) compare
SO2219 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
SO0467 uvrD +0.5 1.7 DNA helicase II (NCBI ptt file) compare
SO2254 +0.5 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO3159 +0.5 3.4 conserved hypothetical protein (NCBI ptt file) compare
SO1139 fklB +0.5 2.0 peptidyl-prolyl cis-trans isomerase FklB (NCBI ptt file) compare
SO3151 +0.5 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO2689 +0.5 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO3356 +0.5 1.3 conserved hypothetical protein TIGR00251 (NCBI ptt file) compare
SO2407 +0.5 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO3157 +0.5 3.1 lipoprotein, putative (NCBI ptt file) compare
SO1970 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
SO4734 +0.5 3.7 sensory box protein (NCBI ptt file) compare
SO0695 +0.5 3.7 glutathione-regulated potassium-efflux system protein KefC, putative (NCBI ptt file) compare
SO1165 +0.5 2.7 rare lipoprotein A (NCBI ptt file) compare
SO0379 +0.5 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO_1210 +0.5 1.7 lipoprotein NlpI (RefSeq) compare
SO3340 +0.5 3.7 hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) compare
SO2978 +0.5 3.5 prophage LambdaSo, site-specific recombinase, phage integrase family (NCBI ptt file) compare
SO0705 +0.5 0.6 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO3179 +0.5 4.2 lipopolysaccharide biosynthesis polymerase, putative (NCBI ptt file) compare
SO0347 +0.5 2.1 acyltransferase family protein (NCBI ptt file) compare
SO1889 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
SO4428 +0.5 2.5 DNA-binding response regulator (NCBI ptt file) compare
SO0321 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
SO0481 +0.5 2.4 peptidyl-prolyl cis-trans isomerase, FKBP-type (NCBI ptt file) compare
SO1350 recO +0.5 1.5 DNA repair protein RecO (NCBI ptt file) compare
SO1068 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO3849 +0.5 0.5 conserved domain protein (NCBI ptt file) compare
SO1101 luxS +0.5 2.1 autoinducer-2 production protein LuxS (NCBI ptt file) compare
SO2984 +0.5 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2213.1 +0.5 0.9 hypothetical glucose-galactose transporter (NCBI ptt file) compare
SO3065 +0.5 0.9 colicin V production protein (NCBI ptt file) compare


Specific Phenotypes

For 13 genes in this experiment