Experiment set8IT068 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x

200 most important genes:

  gene name fitness t score description  
BWI76_RS21475 -9.4 -6.5 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18920 -7.7 -5.3 ATP phosphoribosyltransferase compare
BWI76_RS24285 -7.1 -9.7 cystathionine beta-lyase compare
BWI76_RS20965 -7.0 -4.4 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS23360 -6.9 -4.5 diaminopimelate decarboxylase compare
BWI76_RS00785 -6.9 -6.7 cystathionine gamma-synthase compare
BWI76_RS07065 -6.8 -7.1 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS18925 -6.7 -7.4 histidinol dehydrogenase compare
BWI76_RS09645 -6.7 -2.4 thioredoxin-disulfide reductase compare
BWI76_RS01615 -6.7 -12.0 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS04470 -6.7 -12.8 carbamoyl phosphate synthase large subunit compare
BWI76_RS18935 -6.7 -9.2 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS23220 -6.6 -9.7 amino-acid N-acetyltransferase compare
BWI76_RS04250 -6.6 -9.5 homoserine kinase compare
BWI76_RS10990 -6.6 -3.5 dihydroorotase compare
BWI76_RS07070 -6.6 -6.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS25215 -6.5 -5.3 phospholipid-binding protein MlaC compare
BWI76_RS00805 -6.5 -5.0 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS04465 -6.5 -5.6 carbamoyl-phosphate synthase small subunit compare
BWI76_RS05840 -6.5 -6.6 glutamate 5-kinase compare
BWI76_RS23365 -6.4 -5.6 LysR family transcriptional regulator compare
BWI76_RS18955 -6.4 -5.3 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS13920 -6.4 -10.0 magnesium-translocating P-type ATPase compare
BWI76_RS26570 -6.2 -4.3 anion permease compare
BWI76_RS11840 -6.1 -2.8 tryptophan synthase subunit alpha compare
BWI76_RS21265 -6.0 -13.5 phosphoribosylformylglycinamidine synthase compare
BWI76_RS04255 -6.0 -13.3 threonine synthase compare
BWI76_RS18940 -5.9 -3.7 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS00855 -5.9 -10.4 argininosuccinate lyase compare
BWI76_RS04245 -5.8 -16.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS11855 -5.8 -6.8 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS00980 -5.8 -10.7 PLP-dependent threonine dehydratase compare
BWI76_RS05835 -5.8 -4.8 gamma-glutamyl-phosphate reductase compare
BWI76_RS25220 -5.8 -5.6 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS01655 -5.7 -7.4 homoserine O-succinyltransferase compare
BWI76_RS00990 -5.7 -10.2 ketol-acid reductoisomerase compare
BWI76_RS09755 -5.7 -6.4 phosphoserine transaminase compare
BWI76_RS01350 -5.7 -2.0 NAD(P)H-flavin reductase compare
BWI76_RS00965 -5.7 -2.0 acetolactate synthase 2 small subunit compare
BWI76_RS04675 -5.7 -7.9 3-isopropylmalate dehydrogenase compare
BWI76_RS00850 -5.6 -11.8 acetylglutamate kinase compare
BWI76_RS18930 -5.6 -3.6 histidinol-phosphate transaminase compare
BWI76_RS01610 -5.5 -4.9 phosphoribosylamine--glycine ligase compare
BWI76_RS24400 -5.5 -10.5 outer membrane channel protein TolC compare
BWI76_RS01325 -5.5 -4.3 twin-arginine translocase subunit TatB compare
BWI76_RS04665 -5.4 -19.8 3-isopropylmalate dehydratase small subunit compare
BWI76_RS20350 -5.3 -5.3 amidophosphoribosyltransferase compare
BWI76_RS25115 -5.3 -7.6 argininosuccinate synthase compare
BWI76_RS00985 -5.3 -7.2 transcriptional regulator IlvY compare
BWI76_RS02995 -5.3 -8.7 aspartate carbamoyltransferase compare
BWI76_RS00845 -5.3 -6.8 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS21465 -5.3 -4.1 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS11845 -5.3 -1.9 tryptophan synthase subunit beta compare
BWI76_RS04685 -5.2 -9.6 putative leucine operon leader peptide compare
BWI76_RS04670 -5.1 -7.1 3-isopropylmalate dehydratase large subunit compare
BWI76_RS20895 -5.1 -4.8 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS27385 -5.1 -7.7 orotate phosphoribosyltransferase compare
BWI76_RS09910 -5.0 -17.0 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS23265 -5.0 -4.1 hypothetical protein compare
BWI76_RS19845 -5.0 -8.5 phosphatase compare
BWI76_RS20355 -4.9 -2.9 colicin V production protein compare
BWI76_RS00835 -4.8 -13.2 phosphoenolpyruvate carboxylase compare
BWI76_RS11860 -4.7 -7.0 anthranilate synthase component I compare
BWI76_RS00400 -4.7 -2.9 glutamine synthetase compare
BWI76_RS26085 -4.7 -3.4 3-dehydroquinate synthase compare
BWI76_RS01330 -4.7 -4.8 twin-arginine translocase subunit TatC compare
BWI76_RS23920 -4.7 -6.4 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04645 -4.6 -5.1 3-dehydroquinase compare
BWI76_RS25225 -4.6 -5.8 ABC transporter permease compare
BWI76_RS04240 -4.5 -2.9 thr operon leader peptide compare
BWI76_RS00975 -4.5 -8.0 dihydroxy-acid dehydratase compare
BWI76_RS04680 -4.5 -10.7 2-isopropylmalate synthase compare
BWI76_RS25230 -4.4 -8.3 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS04160 -4.4 -7.4 phosphoserine phosphatase compare
BWI76_RS25645 -4.3 -6.7 shikimate dehydrogenase compare
BWI76_RS03010 -4.3 -6.8 ornithine carbamoyltransferase compare
BWI76_RS04530 -4.3 -3.0 peptidylprolyl isomerase SurA compare
BWI76_RS11965 -4.3 -3.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS23240 -4.2 -2.9 exonuclease V subunit gamma compare
BWI76_RS21070 -4.1 -2.8 outer membrane protein assembly factor BamB compare
BWI76_RS20475 -4.1 -6.8 phospholipid-binding lipoprotein MlaA compare
BWI76_RS20435 -4.1 -2.0 chorismate synthase compare
BWI76_RS09760 -4.1 -3.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS18950 -3.9 -2.8 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS11850 -3.9 -7.0 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS02815 -3.9 -3.0 fructose-bisphosphatase class I compare
BWI76_RS27390 -3.8 -6.0 ribonuclease PH compare
BWI76_RS06525 -3.8 -5.5 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS20650 -3.8 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS01800 -3.7 -5.7 glucose-6-phosphate isomerase compare
BWI76_RS12090 -3.5 -4.0 HNH endonuclease compare
BWI76_RS00960 -3.5 -5.4 acetolactate synthase 2 catalytic subunit compare
BWI76_RS01200 -3.5 -3.6 diaminopimelate epimerase compare
BWI76_RS26000 -3.5 -8.2 aspartate aminotransferase family protein compare
BWI76_RS06530 -3.5 -7.9 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS22755 -3.4 -7.5 phosphoadenosine phosphosulfate reductase compare
BWI76_RS19840 -3.4 -1.7 hypothetical protein compare
BWI76_RS04510 -3.4 -1.8 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS08385 -3.4 -1.4 citrate (Si)-synthase compare
BWI76_RS09660 -3.3 -2.3 DNA translocase FtsK compare
BWI76_RS26460 -3.3 -4.0 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS05015 -3.3 -3.9 transcriptional regulator compare
BWI76_RS02530 -3.3 -2.8 tRNA dimethylallyltransferase compare
BWI76_RS26665 -3.3 -3.3 DNA-binding response regulator compare
BWI76_RS27310 -3.2 -9.3 glycosyltransferase compare
BWI76_RS15115 -3.2 -5.4 MFS transporter compare
BWI76_RS18130 -3.1 -3.6 zinc ABC transporter substrate-binding protein compare
BWI76_RS23230 -3.1 -3.0 exodeoxyribonuclease V subunit beta compare
BWI76_RS26455 -3.0 -4.5 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS01185 -2.7 -3.7 adenylate cyclase compare
BWI76_RS25065 -2.7 -2.9 polyribonucleotide nucleotidyltransferase compare
BWI76_RS22690 -2.6 -4.1 adenylyl-sulfate kinase compare
BWI76_RS25070 -2.6 -2.3 hypothetical protein compare
BWI76_RS06800 -2.6 -1.8 DUF2496 domain-containing protein compare
BWI76_RS21140 -2.6 -3.2 molecular chaperone HscA compare
BWI76_RS00345 -2.6 -4.0 protein disulfide oxidoreductase DsbA compare
BWI76_RS17975 -2.5 -4.6 tail-specific protease compare
BWI76_RS15225 -2.5 -2.4 DeoR family transcriptional regulator compare
BWI76_RS18135 -2.5 -4.7 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS23480 -2.5 -10.1 EAL domain-containing protein compare
BWI76_RS18140 -2.5 -3.8 zinc ABC transporter permease compare
BWI76_RS04705 -2.5 -5.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS13915 -2.4 -5.2 magnesium transport protein MgtC compare
BWI76_RS08210 -2.4 -2.5 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS00355 -2.4 -3.0 DNA polymerase I compare
BWI76_RS22765 -2.3 -8.6 sulfite reductase subunit alpha compare
BWI76_RS22645 -2.3 -5.3 RNA polymerase sigma factor RpoS compare
BWI76_RS15955 -2.2 -4.9 transcriptional regulator compare
BWI76_RS22760 -2.2 -4.6 sulfite reductase subunit beta compare
BWI76_RS19805 -2.2 -4.0 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS01095 -2.2 -2.0 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS26670 -2.2 -8.6 two-component sensor histidine kinase compare
BWI76_RS02735 -2.2 -3.6 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS15110 -2.2 -8.9 putative excinuclease ABC subunit A compare
BWI76_RS05200 -2.1 -2.9 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS21350 -2.1 -3.3 anti-RNA polymerase sigma factor SigE compare
BWI76_RS04305 -2.1 -1.4 molecular chaperone DnaJ compare
BWI76_RS06780 -2.1 -7.8 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS06465 -2.0 -1.7 IclR family transcriptional regulator compare
BWI76_RS25060 -2.0 -2.7 lipoprotein NlpI compare
BWI76_RS24850 -1.9 -7.0 DeoR family transcriptional regulator compare
BWI76_RS20440 -1.9 -1.6 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS06775 -1.9 -10.7 multidrug efflux RND transporter permease subunit compare
BWI76_RS20170 -1.9 -3.4 NADH-quinone oxidoreductase subunit F compare
BWI76_RS02410 -1.8 -2.0 EF-P beta-lysylation protein EpmB compare
BWI76_RS08500 -1.8 -2.8 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS08495 -1.8 -4.9 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS27440 -1.7 -4.0 DNA helicase RecG compare
BWI76_RS00180 -1.7 -1.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS01210 -1.7 -2.8 tyrosine recombinase XerC compare
BWI76_RS17720 -1.7 -1.0 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS26200 -1.7 -5.3 starch synthase compare
BWI76_RS25425 -1.7 -2.1 arginine repressor compare
BWI76_RS08525 -1.6 -3.0 colicin transporter compare
BWI76_RS20135 -1.6 -5.6 NADH-quinone oxidoreductase subunit M compare
BWI76_RS23885 -1.6 -1.6 2-octaprenylphenol hydroxylase compare
BWI76_RS27290 -1.6 -6.8 hypothetical protein compare
BWI76_RS19850 -1.6 -3.2 tRNA-Pro compare
BWI76_RS01275 -1.6 -3.9 LysR family transcriptional regulator compare
BWI76_RS13595 -1.6 -3.0 transcriptional regulator compare
BWI76_RS09655 -1.6 -4.7 leucine-responsive regulatory protein compare
BWI76_RS01090 -1.6 -3.8 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS00390 -1.5 -4.6 two-component system sensor histidine kinase NtrB compare
BWI76_RS27430 -1.5 -1.5 (p)ppGpp synthetase compare
BWI76_RS11610 -1.5 -2.6 glutamate dehydrogenase compare
BWI76_RS20140 -1.5 -3.8 NADH-quinone oxidoreductase subunit L compare
BWI76_RS16355 -1.5 -2.3 electron transport complex subunit A compare
BWI76_RS16490 -1.5 -2.0 glutaredoxin compare
BWI76_RS24025 -1.5 -4.2 agmatinase compare
BWI76_RS10955 -1.5 -1.6 hypothetical protein compare
BWI76_RS27165 -1.5 -2.1 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS00875 -1.5 -4.0 DNA-binding transcriptional regulator FabR compare
BWI76_RS05165 -1.4 -3.4 cobalamin-binding protein compare
BWI76_RS19905 -1.4 -3.8 OmpK36 porin compare
BWI76_RS16215 -1.4 -3.9 hypothetical protein compare
BWI76_RS17000 -1.4 -3.9 Fe-S cluster assembly scaffold SufA compare
BWI76_RS20190 -1.4 -3.4 NADH-quinone oxidoreductase subunit A compare
BWI76_RS10935 -1.4 -3.1 glucan biosynthesis glucosyltransferase H compare
BWI76_RS20270 -1.4 -3.1 hypothetical protein compare
BWI76_RS19705 -1.4 -2.3 kinase compare
BWI76_RS05555 -1.4 -2.1 Crl family RNA polymerase assembly factor compare
BWI76_RS09650 -1.4 -5.4 hypothetical protein compare
BWI76_RS12470 -1.4 -1.6 thiosulfate sulfurtransferase PspE compare
BWI76_RS11060 -1.4 -1.8 septum formation inhibitor Maf compare
BWI76_RS07435 -1.4 -3.0 LacI family transcriptional regulator compare
BWI76_RS01115 -1.4 -2.6 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS25600 -1.3 -1.1 tRNA-Thr compare
BWI76_RS25320 -1.3 -6.5 glutamate synthase compare
BWI76_RS26620 -1.3 -1.3 Fe-S biogenesis protein NfuA compare
BWI76_RS20165 -1.3 -4.0 NADH-quinone oxidoreductase subunit G compare
BWI76_RS26395 -1.3 -4.8 cell division protein FtsE compare
BWI76_RS00710 -1.3 -2.2 6-N-hydroxylaminopurine resistance protein compare
BWI76_RS01080 -1.3 -5.7 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS27170 -1.3 -5.0 MltR family transcriptional regulator compare
BWI76_RS26075 -1.3 -2.3 DNA adenine methylase compare
BWI76_RS16200 -1.3 -2.3 NAD(P) transhydrogenase subunit beta compare
BWI76_RS11130 -1.3 -4.0 PTS glucose transporter subunit IIBC compare
BWI76_RS06765 -1.3 -3.0 transcriptional regulator compare
BWI76_RS21165 -1.3 -1.7 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS05140 -1.3 -2.8 Fe3+-hydroxamate ABC transporter permease FhuB conserved


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms