Experiment set8IT068 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS22120 +2.5 22.7 glutamate--cysteine ligase compare
BWI76_RS06680 +1.4 2.3 hypothetical protein compare
BWI76_RS26405 +1.4 3.5 16S rRNA (guanine(966)-N(2))-methyltransferase compare
BWI76_RS01890 +1.1 5.6 transcriptional regulator Zur compare
BWI76_RS14935 +1.1 2.2 NIPSNAP family containing protein compare
BWI76_RS16920 +1.1 3.1 3-(2,3-dihydroxyphenyl)propionate dioxygenase compare
BWI76_RS08380 +1.0 2.1 endonuclease VIII compare
BWI76_RS03080 +1.0 3.8 (Fe-S)-cluster assembly protein compare
BWI76_RS27670 +0.9 2.8 LysR family transcriptional regulator compare
BWI76_RS14670 +0.9 2.7 hypothetical protein compare
BWI76_RS27425 +0.9 1.4 DNA-directed RNA polymerase subunit omega compare
BWI76_RS11675 +0.9 1.5 arginine N-succinyltransferase compare
BWI76_RS20995 +0.9 5.6 RNA degradosome polyphosphate kinase compare
BWI76_RS25000 +0.9 1.5 malonate decarboxylase acyl carrier protein compare
BWI76_RS16895 +0.9 1.9 3-(3-hydroxy-phenyl)propionate transporter MhpT compare
BWI76_RS15435 +0.8 1.6 hypothetical protein compare
BWI76_RS01795 +0.8 3.0 hypothetical protein compare
BWI76_RS07465 +0.8 3.2 TetR family transcriptional regulator compare
BWI76_RS03105 +0.8 1.4 myo-inosose-2 dehydratase compare
BWI76_RS17915 +0.8 3.2 membrane protein compare
BWI76_RS10345 +0.8 7.0 MFS transporter compare
BWI76_RS11235 +0.8 1.5 hypothetical protein compare
BWI76_RS13545 +0.8 1.6 N-acetyltransferase compare
BWI76_RS11780 +0.8 1.4 2-deoxyglucose-6-phosphatase compare
BWI76_RS25475 +0.8 6.3 TIGR02099 family protein compare
BWI76_RS17300 +0.8 1.7 tRNA-Tyr compare
BWI76_RS27875 +0.8 1.0 membrane protein compare
BWI76_RS10350 +0.8 4.7 EamA family transporter compare
BWI76_RS13240 +0.8 1.7 hypothetical protein compare
BWI76_RS24720 +0.8 1.0 hypothetical protein compare
BWI76_RS12040 +0.8 1.5 hypothetical protein compare
BWI76_RS23125 +0.8 2.3 propanediol dehydratase small subunit compare
BWI76_RS14075 +0.8 1.6 TetR family transcriptional regulator compare
BWI76_RS21130 +0.7 2.1 Fe-S assembly protein IscX compare
BWI76_RS19330 +0.7 1.1 HAD family hydrolase compare
BWI76_RS01650 +0.7 1.6 acetyltransferase compare
BWI76_RS14040 +0.7 1.7 thiaminase compare
BWI76_RS18580 +0.7 1.7 hypothetical protein compare
BWI76_RS23655 +0.7 5.1 DeoR family transcriptional regulator compare
BWI76_RS24480 +0.7 4.5 undecaprenyl-diphosphatase compare
BWI76_RS07995 +0.7 1.3 twin-arginine translocase subunit TatA compare
BWI76_RS01995 +0.7 1.4 AraC family transcriptional regulator compare
BWI76_RS07795 +0.7 2.4 oxidoreductase compare
BWI76_RS11790 +0.7 2.2 acyl-CoA thioesterase compare
BWI76_RS19215 +0.7 1.6 proline-specific peptidase compare
BWI76_RS27675 +0.7 3.8 EmrB/QacA family drug resistance transporter compare
BWI76_RS04970 +0.7 1.9 ABC transporter permease compare
BWI76_RS17805 +0.7 1.1 membrane protein compare
BWI76_RS11515 +0.7 1.3 peptide-methionine (R)-S-oxide reductase compare
BWI76_RS15210 +0.7 1.8 LysR family transcriptional regulator compare
BWI76_RS17080 +0.7 3.3 hypothetical protein compare
BWI76_RS08765 +0.6 1.2 8-amino-7-oxononanoate synthase compare
BWI76_RS11525 +0.6 1.7 HNH endonuclease compare
BWI76_RS14665 +0.6 2.0 minor fimbrial subunit YfcQ compare
BWI76_RS07985 +0.6 0.9 fluoride ion transporter CrcB compare
BWI76_RS14145 +0.6 2.9 dihydrolipoyl dehydrogenase compare
BWI76_RS15920 +0.6 1.3 hypothetical protein compare
BWI76_RS01070 +0.6 2.5 thiol reductase thioredoxin compare
BWI76_RS16315 +0.6 1.0 SirA-like protein compare
BWI76_RS23305 +0.6 1.6 NADP(H)-dependent aldo-keto reductase compare
BWI76_RS12780 +0.6 1.9 hypothetical protein compare
BWI76_RS15695 +0.6 2.3 hypothetical protein compare
BWI76_RS16270 +0.6 3.7 fumarate hydratase, class II compare
BWI76_RS09025 +0.6 0.7 GntR family transcriptional regulator compare
BWI76_RS00480 +0.6 1.9 hypothetical protein compare
BWI76_RS11440 +0.6 1.0 hypothetical protein compare
BWI76_RS01940 +0.6 2.1 hypothetical protein compare
BWI76_RS26745 +0.6 2.4 antibiotic biosynthesis monooxygenase compare
BWI76_RS23165 +0.6 2.0 ATP:cob(I)alamin adenosyltransferase compare
BWI76_RS15200 +0.6 2.3 glutaminase compare
BWI76_RS05180 +0.6 3.1 serine endoprotease DegQ compare
BWI76_RS18420 +0.6 3.5 DNA (cytosine-5-)-methyltransferase compare
BWI76_RS07875 +0.6 3.0 dihydrofolate reductase compare
BWI76_RS12695 +0.6 2.3 zinc transporter ZntB compare
BWI76_RS12715 +0.6 1.8 universal stress protein F compare
BWI76_RS10820 +0.6 1.9 iron uptake system protein EfeO compare
BWI76_RS16235 +0.6 2.0 membrane protein compare
BWI76_RS07380 +0.6 1.3 hypothetical protein compare
BWI76_RS18165 +0.6 1.0 NUDIX pyrophosphatase compare
BWI76_RS18815 +0.6 2.0 nitrogenase molybdenum-iron protein alpha chain compare
BWI76_RS14015 +0.6 1.8 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS11915 +0.6 2.0 protease SohB compare
BWI76_RS04060 +0.5 1.6 hypothetical protein compare
BWI76_RS16805 +0.5 1.3 basic amino acid ABC transporter substrate-binding protein compare
BWI76_RS17750 +0.5 1.4 Na+/H+ antiporter NhaB compare
BWI76_RS03995 +0.5 1.8 hypothetical protein compare
BWI76_RS08395 +0.5 1.4 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS01885 +0.5 0.9 CsbD family protein compare
BWI76_RS25270 +0.5 1.4 ribosome hibernation promoting factor compare
BWI76_RS18600 +0.5 1.4 HupC/HyaC/HydC family protein compare
BWI76_RS08315 +0.5 1.3 K+-transporting ATPase subunit B compare
BWI76_RS02655 +0.5 1.4 hypothetical protein compare
BWI76_RS02090 +0.5 2.4 membrane protein compare
BWI76_RS14170 +0.5 2.2 hypothetical protein compare
BWI76_RS02725 +0.5 0.8 HxlR family transcriptional regulator compare
BWI76_RS15795 +0.5 2.3 bacteriophage CII family protein compare
BWI76_RS16335 +0.5 1.1 division septum protein Blr compare
BWI76_RS21115 +0.5 1.9 3-mercaptopyruvate sulfurtransferase compare
BWI76_RS22815 +0.5 3.8 hybrid sensor histidine kinase/response regulator compare
BWI76_RS10730 +0.5 1.6 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS01805 +0.5 1.7 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase compare
BWI76_RS00590 +0.5 1.3 hypothetical protein compare
BWI76_RS20750 +0.5 0.8 carboxysome structural protein EutK compare
BWI76_RS24035 +0.5 1.6 hypothetical protein compare
BWI76_RS00270 +0.5 3.8 D-ribose pyranase (EC 5.4.99.62) (from data) compare
BWI76_RS26185 +0.5 2.0 thiosulfate sulfurtransferase compare
BWI76_RS19275 +0.5 3.1 DNA-binding response regulator compare
BWI76_RS16470 +0.5 0.9 transcriptional repressor NemR compare
BWI76_RS15000 +0.5 1.3 amino acid ABC transporter ATP-binding protein compare
BWI76_RS14410 +0.5 0.9 hypothetical protein compare
BWI76_RS15975 +0.5 0.7 hypothetical protein compare
BWI76_RS03665 +0.5 0.8 ABC transporter ATP-binding protein compare
BWI76_RS16515 +0.5 1.3 LysR family transcriptional regulator compare
BWI76_RS24765 +0.5 1.9 membrane protein compare
BWI76_RS07565 +0.5 2.6 LysE type translocator family protein compare
BWI76_RS07635 +0.5 2.3 Hok/gef cell toxic protein compare
BWI76_RS03100 +0.5 2.1 protein iolH compare
BWI76_RS24605 +0.5 3.4 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS16915 +0.5 1.8 alpha/beta hydrolase fold protein compare
BWI76_RS27510 +0.5 1.6 aquaporin compare
BWI76_RS13610 +0.5 1.9 sugar transporter compare
BWI76_RS16905 +0.5 1.3 acetaldehyde dehydrogenase (acetylating) compare
BWI76_RS15190 +0.5 2.1 GGDEF domain-containing protein compare
BWI76_RS18305 +0.5 2.0 dihydrodipicolinate synthase family protein compare
BWI76_RS24660 +0.5 1.3 autoinducer 2 ABC transporter ATP-binding protein LsrA compare
BWI76_RS19470 +0.5 1.4 DNA-binding response regulator compare
BWI76_RS25365 +0.5 3.3 serine endoprotease DegQ compare
BWI76_RS00440 +0.5 1.0 CopG family transcriptional regulator compare
BWI76_RS26520 +0.5 1.9 nickel import ATP-binding protein NikE compare
BWI76_RS14890 +0.5 1.6 carbohydrate kinase compare
BWI76_RS15280 +0.5 2.1 sugar transporter compare
BWI76_RS05655 +0.5 1.5 hypothetical protein compare
BWI76_RS02045 +0.5 3.1 LysR family transcriptional regulator compare
BWI76_RS12155 +0.5 1.6 hypothetical protein compare
BWI76_RS11735 +0.5 1.6 PTS N,N'-diacetylchitobiose transporter subunit IIA compare
BWI76_RS20915 +0.5 2.2 peroxiredoxin compare
BWI76_RS11600 +0.5 1.9 selenide, water dikinase SelD compare
BWI76_RS15980 +0.5 1.2 lysine transporter LysE compare
BWI76_RS22325 +0.5 2.3 hydrogenase 3 membrane subunit compare
BWI76_RS21565 +0.5 0.8 outer membrane protein assembly factor BamE compare
BWI76_RS17330 +0.5 1.3 nitrate reductase subunit beta compare
BWI76_RS09490 +0.5 1.6 DNA-binding response regulator compare
BWI76_RS16160 +0.5 1.4 LysR family transcriptional regulator compare
BWI76_RS25905 +0.5 1.6 hypothetical protein compare
BWI76_RS24600 +0.5 1.8 dihydroxyacetone kinase compare
BWI76_RS15990 +0.5 1.3 serine protease compare
BWI76_RS06080 +0.5 1.3 taurine dioxygenase compare
BWI76_RS24595 +0.5 2.8 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS16195 +0.5 0.5 hypothetical protein compare
BWI76_RS16230 +0.5 1.7 dihydromonapterin reductase compare
BWI76_RS17165 +0.5 2.0 hypothetical protein compare
BWI76_RS15930 +0.5 0.9 dimethylsulfoxide reductase, chain B compare
BWI76_RS23040 +0.5 1.2 sirohydrochlorin cobaltochelatase compare
BWI76_RS26215 +0.5 2.2 glycogen-branching enzyme compare
BWI76_RS18885 +0.5 0.7 nitrogen fixation regulatory protein compare
BWI76_RS19980 +0.5 1.8 2-keto-3-deoxy-L-rhamnonate aldolase compare
BWI76_RS16140 +0.5 1.1 3-oxoadipate CoA-transferase compare
BWI76_RS01235 +0.5 1.6 hypothetical protein compare
BWI76_RS23560 +0.5 1.7 hypothetical protein compare
BWI76_RS18735 +0.5 2.0 tautomerase family protein compare
BWI76_RS18755 +0.4 0.7 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS24625 +0.4 2.2 hypothetical protein compare
BWI76_RS05005 +0.4 1.4 polynucleotide adenylyltransferase compare
BWI76_RS26910 +0.4 1.7 hypothetical protein compare
BWI76_RS12710 +0.4 2.3 tRNA 2-thiocytidine(32) synthetase TtcA compare
BWI76_RS19585 +0.4 1.0 gentisate 1,2-dioxygenase compare
BWI76_RS24945 +0.4 0.7 glutamine amidotransferase compare
BWI76_RS19600 +0.4 2.2 hypothetical protein compare
BWI76_RS21445 +0.4 1.2 hypothetical protein compare
BWI76_RS21325 +0.4 1.6 hypothetical protein compare
BWI76_RS14225 +0.4 1.4 anti-ECF sigma factor ChrR compare
BWI76_RS15035 +0.4 0.9 metal ABC transporter permease compare
BWI76_RS12045 +0.4 1.2 hypothetical protein compare
BWI76_RS19860 +0.4 1.5 hypothetical protein compare
BWI76_RS12605 +0.4 1.6 hypothetical protein compare
BWI76_RS05160 +0.4 0.9 hypothetical protein compare
BWI76_RS08295 +0.4 3.1 hypothetical protein compare
BWI76_RS07855 +0.4 1.1 PucR family transcriptional regulator compare
BWI76_RS20565 +0.4 0.7 hypothetical protein compare
BWI76_RS00795 +0.4 1.2 carboxymuconolactone decarboxylase compare
BWI76_RS22110 +0.4 1.9 putative helix-turn-helix AraC-type transcriptional regulator compare
BWI76_RS15030 +0.4 1.7 ABC transporter compare
BWI76_RS11405 +0.4 2.4 lipid A biosynthesis acyltransferase compare
BWI76_RS04815 +0.4 1.1 cell division protein ZapD compare
BWI76_RS07865 +0.4 1.4 methylthioribulose 1-phosphate dehydratase compare
BWI76_RS20460 +0.4 1.0 acetyl-CoA C-acyltransferase FadI compare
BWI76_RS14505 +0.4 1.3 salicylate synthase Irp9 compare
BWI76_RS16225 +0.4 2.7 arginine:ornithine antiporter compare
BWI76_RS14715 +0.4 1.7 type I methionyl aminopeptidase compare
BWI76_RS11665 +0.4 2.1 exodeoxyribonuclease III compare
BWI76_RS20225 +0.4 1.9 hypothetical protein compare
BWI76_RS14390 +0.4 0.6 hypothetical protein compare
BWI76_RS11260 +0.4 1.0 hypothetical protein compare
BWI76_RS16950 +0.4 1.6 TetR family transcriptional regulator compare
BWI76_RS09935 +0.4 1.6 paraquat-inducible membrane protein A compare
BWI76_RS18110 +0.4 1.6 transcriptional regulator HexR compare
BWI76_RS06785 +0.4 2.0 DNA-binding transcriptional repressor AcrR compare
BWI76_RS12625 +0.4 2.0 isoflavone reductase compare
BWI76_RS27515 +0.4 3.3 glycerol kinase compare
BWI76_RS27635 +0.4 1.4 AraC family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms