Experiment set8IT067 for Shewanella oneidensis MR-1

Compare to:

LB - with RNA protect

200 most detrimental genes:

  gene name fitness t score description  
SO2746 +3.0 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO2960 +2.4 10.8 conserved hypothetical protein (NCBI ptt file) compare
SO2955 +2.2 9.7 conserved hypothetical protein (NCBI ptt file) compare
SO2958 +2.0 9.2 conserved hypothetical protein (NCBI ptt file) compare
SO2712 +2.0 4.4 hypothetical protein (NCBI ptt file) compare
SO2954 +1.9 3.7 hypothetical protein (NCBI ptt file) compare
SO2956 +1.8 7.8 prophage LambdaSo, major tail protein V, putative (NCBI ptt file) compare
SO2986 +1.8 3.0 hypothetical protein (NCBI ptt file) compare
SO2953 H +1.8 13.4 prophage LambdaSo, tail length tape meausure protein (NCBI ptt file) compare
SO2899 cysZ +1.8 12.3 cysZ protein (NCBI ptt file) compare
SO2949 +1.7 10.3 prophage LambdaSo, minor tail protein L (NCBI ptt file) compare
SO2939 +1.7 10.4 hypothetical protein (NCBI ptt file) compare
SO2952 +1.7 9.3 prophage LambdaSo, minor tail protein M, putative (NCBI ptt file) compare
SO2957 +1.7 10.1 conserved hypothetical protein (NCBI ptt file) compare
SO2940 +1.7 14.6 prophage LambdaSo, host specificity protein J, putative (NCBI ptt file) compare
SO2948 +1.6 10.5 prophage LambdaSo, tail assembly protein K, putative (NCBI ptt file) compare
SO2941 +1.6 10.2 prophage LambdaSo, tail assembly protein I (NCBI ptt file) compare
SO2965 +1.5 12.3 prophage LambdaSo, portal protein, HK97 family (NCBI ptt file) compare
SO2938 +1.5 7.0 hypothetical protein (NCBI ptt file) compare
SO2947 +1.4 3.1 hypothetical protein (NCBI ptt file) compare
SO2962 +1.4 4.3 hypothetical protein (NCBI ptt file) compare
SO2968 +1.4 8.0 hypothetical phage terminase, small subunit (NCBI ptt file) compare
SO_3457 +1.4 9.7 hybrid sensory histidine kinase BarA (RefSeq) compare
SO2430 ruvA +1.4 1.8 Holliday junction DNA helicase RuvA (NCBI ptt file) compare
SO2665 +1.4 7.3 hypothetical protein (NCBI ptt file) compare
SO2970 +1.4 4.3 hypothetical protein (NCBI ptt file) compare
SO2951 +1.3 10.8 hypothetical protein (NCBI ptt file) compare
SO2971 +1.3 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO2991 +1.2 4.6 conserved hypothetical protein (NCBI ptt file) compare
SO2964 +1.2 6.3 ClpP protease family protein (NCBI ptt file) compare
SO2969 +1.2 4.0 prophage LambdaSo, holin, putative (NCBI ptt file) compare
SO2946 +1.2 8.1 hypothetical protein (NCBI ptt file) compare
SO2950 +1.2 7.0 hypothetical protein (NCBI ptt file) compare
SO2967 +1.2 7.3 hypothetical phage terminase large subunit (NCBI ptt file) compare
SO2959 +1.1 5.4 hypothetical protein (NCBI ptt file) compare
SO2700 +1.1 4.3 prophage MuSo2, baseplate assembly protein V (NCBI ptt file) compare
SO2972 +1.1 6.6 hypothetical protein (NCBI ptt file) compare
SO2977 +1.1 6.2 hypothetical protein (NCBI ptt file) compare
SO0216 +1.1 1.4 hypothetical protein (NCBI ptt file) compare
SO2668 +1.1 5.9 prophage MuSo2, positive regulator of late transcription, putative (NCBI ptt file) compare
SO2983 +1.1 5.0 hypothetical protein (NCBI ptt file) compare
SO1372 +1.1 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO2999 +1.1 3.5 hypothetical protein (NCBI ptt file) compare
SO3211 flhG +1.1 2.5 flagellar biosynthetic protein FlhG (NCBI ptt file) compare
SO2245 dnaQ-1 +1.1 1.8 DNA polymerase III, epsilon subunit (NCBI ptt file) compare
SO2944 +1.1 7.8 hypothetical protein (NCBI ptt file) compare
SO2998 +1.1 2.8 hypothetical protein (NCBI ptt file) compare
SO3000 +1.1 4.9 conserved hypothetical protein (NCBI ptt file) compare
SO2992 +1.1 5.2 hypothetical protein (NCBI ptt file) compare
SO1860 +1.1 4.2 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO2945 +1.1 7.4 hypothetical protein (NCBI ptt file) compare
SO2975 +1.0 7.8 hypothetical protein (NCBI ptt file) compare
SO3003 +1.0 3.8 hypothetical protein (NCBI ptt file) compare
SO2974.1 +1.0 6.1 hypothetical protein (NCBI ptt file) compare
SO2208 +1.0 2.5 phosphotyrosine protein phosphatase (NCBI ptt file) compare
SO2699 +1.0 4.7 prophage MuSo2, 43 kDa tail protein, putative (NCBI ptt file) compare
SO2982 +1.0 4.8 hypothetical protein (NCBI ptt file) compare
SO3684 +1.0 2.0 transcriptional regulator, TetR family (NCBI ptt file) compare
SO2943 +1.0 3.9 conserved domain protein (NCBI ptt file) compare
SO1809 pspC +1.0 4.2 phage shock protein C (NCBI ptt file) compare
SO2701 +1.0 5.2 conserved hypothetical protein (NCBI ptt file) compare
SO2995 +1.0 2.4 hypothetical protein (NCBI ptt file) compare
SO0309 +1.0 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO2695 +1.0 6.4 conserved hypothetical protein (NCBI ptt file) compare
SO0430 +1.0 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2974 +1.0 5.2 hypothetical protein (NCBI ptt file) compare
SO0637 +0.9 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO2942 +0.9 4.9 hypothetical protein (NCBI ptt file) compare
SO2981 +0.9 4.3 hypothetical protein (NCBI ptt file) compare
SO2667 +0.9 6.0 conserved hypothetical protein (NCBI ptt file) compare
SO2973 +0.9 5.1 prophage LambdaSo, lysozyme, putative (NCBI ptt file) compare
SO2976 +0.9 4.7 conserved hypothetical protein (NCBI ptt file) compare
SO2684 +0.9 4.9 prophage MuSo2, protein Gp32, putative (NCBI ptt file) compare
SO2664 +0.9 5.5 hypothetical protein (NCBI ptt file) compare
SO3002 +0.9 4.8 conserved hypothetical protein (NCBI ptt file) compare
SO2661 +0.9 3.3 hypothetical protein (NCBI ptt file) compare
SO2691 +0.9 3.0 hypothetical protein (NCBI ptt file) compare
SO2679 +0.9 5.9 prophage MuSo2, portal protein, putative (NCBI ptt file) compare
SO2690 +0.9 3.9 prophage MuSo2, virion morphogenesis protein, putative (NCBI ptt file) compare
SO2677 +0.9 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO_2993 +0.9 5.4 no description compare
SO2979 +0.9 6.0 hypothetical protein (NCBI ptt file) compare
SO2666 +0.8 4.9 hypothetical protein (NCBI ptt file) compare
SO2680 +0.8 5.4 conserved hypothetical protein (NCBI ptt file) compare
SO2114 +0.8 3.4 conserved hypothetical protein (NCBI ptt file) compare
SO1050 +0.8 1.2 hypothetical protein (NCBI ptt file) compare
SO2698 +0.8 5.8 prophage MuSo2, DNA circulation protein, putative (NCBI ptt file) compare
SO3203 +0.8 1.1 CheW domain protein (NCBI ptt file) compare
SO3351 pilT +0.8 4.2 twitching motility protein PilT (NCBI ptt file) compare
SO0624 crp +0.8 3.4 catabolite gene activator (NCBI ptt file) compare
SO3004 +0.8 5.3 prophage LambdaSo, DNA modification methyltransferase, putative (NCBI ptt file) compare
SO2663 +0.8 5.3 conserved hypothetical protein (NCBI ptt file) compare
SO2659 +0.8 3.5 hypothetical protein (NCBI ptt file) compare
SO2678 +0.8 1.4 hypothetical protein (NCBI ptt file) compare
SO2671 +0.8 5.5 conserved hypothetical protein (NCBI ptt file) compare
SO2697 +0.8 7.1 conserved hypothetical protein (NCBI ptt file) compare
SO2474 +0.8 1.5 carbonic anhydrase family protein (NCBI ptt file) compare
SO2669 +0.8 4.7 hypothetical protein (NCBI ptt file) compare
SO2268 hscA +0.8 2.0 chaperone protein HscA (NCBI ptt file) compare
SO2987 +0.8 2.2 hypothetical protein (NCBI ptt file) compare
SO2686 +0.8 3.5 hypothetical protein (NCBI ptt file) compare
SO1570 +0.8 4.6 GGDEF domain protein (NCBI ptt file) compare
SO2676 +0.8 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO3006 +0.8 5.5 prophage LambdaSo, type II DNA modification methyltransferase, putative (NCBI ptt file) compare
SO2472 +0.8 0.9 D-alanyl-D-alanine carboxypeptidase-related protein (NCBI ptt file) compare
SO2205 +0.7 1.9 hypothetical protein (NCBI ptt file) compare
SO2673 +0.7 4.0 hypothetical protein (NCBI ptt file) compare
SO2980 +0.7 4.3 hypothetical protein (NCBI ptt file) compare
SO2254 +0.7 3.7 conserved hypothetical protein (NCBI ptt file) compare
SO2672 +0.7 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO1843 +0.7 3.2 hypothetical protein (NCBI ptt file) compare
SOA0085 +0.7 1.9 ISSod8, transposase (NCBI ptt file) compare
SO2713 +0.7 1.1 transporter, putative (NCBI ptt file) compare
SO0559 +0.7 3.9 MaoC domain protein (NCBI ptt file) compare
SO3677 +0.7 1.6 hypothetical protein (NCBI ptt file) compare
SO2704 +0.7 5.5 prophage MuSo2, tail fiber protein, putative (NCBI ptt file) compare
SO3313 +0.7 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO2656 +0.7 1.2 hypothetical protein (NCBI ptt file) compare
SO2702 +0.7 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO_t008 tRNA-Thr-1 +0.7 0.7 tRNA-Thr (RefSeq) compare
SO2988 +0.7 2.6 conserved hypothetical protein (NCBI ptt file) compare
SO2670 +0.7 4.8 hypothetical protein (NCBI ptt file) compare
SO3005 +0.7 4.0 conserved hypothetical protein (NCBI ptt file) compare
SO4368 +0.7 1.9 acyl carrier protein, putative (NCBI ptt file) compare
SO2332 +0.7 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO2614 +0.7 1.3 conserved hypothetical protein TIGR00247 (NCBI ptt file) compare
SO3062 +0.7 1.3 hypothetical protein (NCBI ptt file) compare
SO2681 +0.7 3.6 prophage MuSo2, F protein, putative (NCBI ptt file) compare
SOA0057 +0.7 1.0 hypothetical protein (NCBI ptt file) compare
SO2514 nth +0.7 1.6 endonuclease III (NCBI ptt file) compare
SO1487 +0.6 2.0 hypothetical protein (NCBI ptt file) compare
SO1910 +0.6 2.1 1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative (NCBI ptt file) compare
SO1298.3 +0.6 1.4 hypothetical Na+/H+ antiporter (NCBI ptt file) compare
SO1213 +0.6 1.3 hydrolase, TatD family (NCBI ptt file) compare
SO2858 +0.6 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO1817 +0.6 1.1 primosomal replication protein n'', putative (NCBI ptt file) compare
SO2997 +0.6 2.4 hypothetical protein (NCBI ptt file) compare
SO0467 uvrD +0.6 2.4 DNA helicase II (NCBI ptt file) compare
SO1470 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
SO4546 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO4048 +0.6 2.3 cytochrome c family protein (NCBI ptt file) compare
SO1960 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO1806 pspF +0.6 3.7 psp operon transcriptional activator (NCBI ptt file) compare
SO2688 +0.6 2.7 hypothetical protein (NCBI ptt file) compare
SO2693 +0.6 3.8 prophage MuSo2, tail sheath protein, putative (NCBI ptt file) compare
SO1169 +0.6 2.4 conserved hypothetical protein TIGR00246 (NCBI ptt file) compare
SO0603 hfq +0.6 0.5 host factor-I protein (NCBI ptt file) compare
SO2297 +0.6 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO2675 +0.6 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO0306 +0.6 4.3 hypothetical protein (NCBI ptt file) compare
SO3748 +0.6 3.2 LysM domain protein (NCBI ptt file) compare
SO1533 +0.6 2.5 glycine cleavage system transcriptional activator, putative (NCBI ptt file) compare
SOA0104 +0.6 1.4 hypothetical protein (NCBI ptt file) compare
SO2984 +0.6 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO2071 hisB +0.6 2.3 imidazoleglycerol-phosphate dehydratase/histidinol-phosphatase (NCBI ptt file) compare
SO3648 +0.6 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO2658 +0.6 0.8 hypothetical protein (NCBI ptt file) compare
SO2703 +0.6 3.0 conserved hypothetical protein (NCBI ptt file) compare
SO3280 +0.6 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO3676 +0.6 2.1 hypothetical protein (NCBI ptt file) compare
SO2417 +0.6 1.8 iron-sulfur cluster-binding protein (NCBI ptt file) compare
SO3617 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
SO2525 +0.5 3.4 ABC transporter, ATP-binding protein (NCBI ptt file) compare
SO1568 +0.5 1.0 hypothetical protein (NCBI ptt file) compare
SO1159 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
SO2660 +0.5 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO3254 flgM +0.5 2.2 negative regulator of flagellin synthesis FlgM (NCBI ptt file) compare
SO4525.1 +0.5 2.7 hypothetical transcriptional regulator, LysR family (NCBI ptt file) compare
SO1329 +0.5 2.9 adenylate cyclase-related protein (NCBI ptt file) compare
SO0452 trxC +0.5 1.1 thioredoxin 2 (NCBI ptt file) compare
SO0084 +0.5 2.5 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file) compare
SO2685 +0.5 2.5 prophage MuSo2, major head subunit, putative (NCBI ptt file) compare
SO2682 +0.5 1.3 hypothetical protein (NCBI ptt file) compare
SO2852 +0.5 1.4 transcriptional regulator, GntR family (NCBI ptt file) compare
SO1537 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
SO2296 ribE-1 +0.5 1.7 riboflavin synthase, alpha subunit (NCBI ptt file) compare
SO3983 +0.5 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO0217 tufB +0.5 0.5 translation elongation factor Tu (NCBI ptt file) compare
SO4685 +0.5 3.1 conserved hypothetical protein (NCBI ptt file) compare
SO1434.2 +0.5 1.8 hypothetical integrase (NCBI ptt file) compare
SO1578 +0.5 1.7 transcriptional regulator, TetR family (NCBI ptt file) compare
SO_1054 +0.5 2.4 no description compare
SO3229 fliE +0.5 0.7 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SO0094 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
SO2234 +0.5 1.8 hypothetical protein (NCBI ptt file) compare
SO3867 +0.5 1.9 transcriptional regulator, Cro/CI family (NCBI ptt file) compare
SO4142 +0.5 1.6 cytochrome c family protein (NCBI ptt file) compare
SO1518 +0.5 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO1139 fklB +0.5 2.4 peptidyl-prolyl cis-trans isomerase FklB (NCBI ptt file) compare
SO4079 +0.5 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO1788 miaE +0.5 2.1 tRNA-(MS[2]IO[6]A)-hydroxylase (NCBI ptt file) compare
SO0208.1 +0.5 0.7 putative transposase (NCBI ptt file) compare
SO2480 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
SO3819.4 +0.5 0.9 hypothetical ammonia permease (NCBI ptt file) compare
SO4035 +0.5 1.7 hypothetical protein (NCBI ptt file) compare
SO2978 +0.5 3.4 prophage LambdaSo, site-specific recombinase, phage integrase family (NCBI ptt file) compare
SO0808 +0.5 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO_3240 +0.5 1.1 no description compare
SO3029 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
SO4491 +0.5 1.2 hypothetical protein (NCBI ptt file) compare


Specific Phenotypes

For 18 genes in this experiment