Experiment set8IT067 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most detrimental genes:

  gene name fitness t score description  
BWI76_RS07465 +1.8 10.1 TetR family transcriptional regulator compare
BWI76_RS01890 +1.8 10.5 transcriptional regulator Zur compare
BWI76_RS05075 +1.2 2.0 type II secretion system protein GspG compare
BWI76_RS03080 +1.1 4.0 (Fe-S)-cluster assembly protein compare
BWI76_RS11430 +1.0 2.1 lipoprotein compare
BWI76_RS24480 +1.0 7.0 undecaprenyl-diphosphatase compare
BWI76_RS20995 +1.0 6.2 RNA degradosome polyphosphate kinase compare
BWI76_RS27675 +1.0 4.9 EmrB/QacA family drug resistance transporter compare
BWI76_RS05235 +0.9 2.1 hypothetical protein compare
BWI76_RS11520 +0.9 2.1 hypothetical protein compare
BWI76_RS24600 +0.8 3.9 dihydroxyacetone kinase compare
BWI76_RS08315 +0.8 2.4 K+-transporting ATPase subunit B compare
BWI76_RS26685 +0.8 3.7 glutathione-disulfide reductase compare
BWI76_RS22815 +0.8 6.1 hybrid sensor histidine kinase/response regulator compare
BWI76_RS01540 +0.8 1.1 thiamine biosynthesis protein ThiS compare
BWI76_RS16195 +0.8 2.3 hypothetical protein compare
BWI76_RS20280 +0.7 2.7 phosphodiesterase compare
BWI76_RS02855 +0.7 1.7 cytochrome B562 compare
BWI76_RS22185 +0.7 2.5 hypothetical protein compare
BWI76_RS17910 +0.7 4.8 hypothetical protein compare
BWI76_RS24720 +0.7 0.8 hypothetical protein compare
BWI76_RS02725 +0.7 1.2 HxlR family transcriptional regulator compare
BWI76_RS15975 +0.7 1.4 hypothetical protein compare
BWI76_RS19460 +0.7 1.9 lipoprotein compare
BWI76_RS24825 +0.7 0.9 2-hydroxy-3-oxopropionate reductase compare
BWI76_RS15980 +0.7 2.4 lysine transporter LysE compare
BWI76_RS22685 +0.7 4.4 hypothetical protein compare
BWI76_RS24955 +0.7 0.9 hypothetical protein compare
BWI76_RS17765 +0.7 2.0 hypothetical protein compare
BWI76_RS06290 +0.7 2.2 ACP phosphodiesterase compare
BWI76_RS11060 +0.7 1.3 septum formation inhibitor Maf compare
BWI76_RS13480 +0.7 1.8 XRE family transcriptional regulator compare
BWI76_RS24625 +0.7 1.5 hypothetical protein compare
BWI76_RS10345 +0.7 5.8 MFS transporter compare
BWI76_RS26580 +0.7 3.0 universal stress protein A compare
BWI76_RS04155 +0.7 2.5 membrane protein compare
BWI76_RS17770 +0.7 1.4 isomerase/hydrolase compare
BWI76_RS05425 +0.7 3.4 EEP domain-containing protein compare
BWI76_RS18335 +0.7 4.9 DNA-binding response regulator compare
BWI76_RS05005 +0.6 2.4 polynucleotide adenylyltransferase compare
BWI76_RS15190 +0.6 3.0 GGDEF domain-containing protein compare
BWI76_RS06340 +0.6 1.2 hypothetical protein compare
BWI76_RS14005 +0.6 2.0 TetR family transcriptional regulator compare
BWI76_RS16675 +0.6 1.6 ABC transporter compare
BWI76_RS24605 +0.6 4.7 dihydroxyacetone kinase subunit DhaM compare
BWI76_RS19600 +0.6 3.7 hypothetical protein compare
BWI76_RS19555 +0.6 3.9 Beta-glucoside phosphotransferase system, IIA/IIB/IIC components (from data) compare
BWI76_RS09680 +0.6 2.3 dimethyl sulfoxide reductase subunit A compare
BWI76_RS20375 +0.6 0.8 membrane protein compare
BWI76_RS10730 +0.6 2.2 bifunctional glucose-1-phosphatase/inositol phosphatase compare
BWI76_RS20795 +0.6 1.3 ethanolamine catabolic microcompartment shell protein EutN compare
BWI76_RS13590 +0.6 1.9 hypothetical protein compare
BWI76_RS00590 +0.6 2.2 hypothetical protein compare
BWI76_RS23300 +0.6 3.7 YgdI/YgdR family lipoprotein compare
BWI76_RS07530 +0.6 2.1 binding-protein-dependent transport system inner membrane protein compare
BWI76_RS10350 +0.6 4.5 EamA family transporter compare
BWI76_RS09180 +0.6 2.6 hypothetical protein compare
BWI76_RS21565 +0.6 1.2 outer membrane protein assembly factor BamE compare
BWI76_RS22360 +0.6 1.9 hydrogenase formation protein HypD compare
BWI76_RS06435 +0.6 1.6 MFS transporter compare
BWI76_RS05485 +0.6 4.0 transpeptidase compare
BWI76_RS20695 +0.6 2.2 sulfate/thiosulfate transporter permease subunit compare
BWI76_RS08875 +0.6 3.3 multidrug ABC transporter ATP-binding protein compare
BWI76_RS07645 +0.6 1.0 short-chain dehydrogenase/reductase compare
BWI76_RS20915 +0.6 3.8 peroxiredoxin compare
BWI76_RS26285 +0.6 2.2 glycerophosphodiester phosphodiesterase compare
BWI76_RS15095 +0.6 2.7 isochorismatase compare
BWI76_RS23655 +0.6 2.5 DeoR family transcriptional regulator compare
BWI76_RS06785 +0.6 2.7 DNA-binding transcriptional repressor AcrR compare
BWI76_RS24915 +0.6 4.0 penicillin-binding protein activator compare
BWI76_RS19325 +0.6 1.4 mandelate racemase compare
BWI76_RS01070 +0.6 3.0 thiol reductase thioredoxin compare
BWI76_RS07875 +0.6 2.3 dihydrofolate reductase compare
BWI76_RS09825 +0.6 2.7 envelope biogenesis factor ElyC compare
BWI76_RS07350 +0.6 2.6 alcohol dehydrogenase compare
BWI76_RS19890 +0.6 2.3 alpha-ketoglutarate-dependent dioxygenase AlkB compare
BWI76_RS16955 +0.6 1.2 hypothetical protein compare
BWI76_RS09625 +0.6 1.4 hypothetical protein compare
BWI76_RS16910 +0.6 1.2 2-keto-4-pentenoate hydratase compare
BWI76_RS16515 +0.6 1.8 LysR family transcriptional regulator compare
BWI76_RS27425 +0.6 1.4 DNA-directed RNA polymerase subunit omega compare
BWI76_RS00725 +0.5 2.3 periplasmic repressor CpxP compare
BWI76_RS06870 +0.5 4.1 aminoacyl-tRNA deacylase compare
BWI76_RS15260 +0.5 1.4 hypothetical protein compare
BWI76_RS14765 +0.5 3.5 PTS lactose/cellobiose transporter subunit IIB compare
BWI76_RS10430 +0.5 1.8 thiol:disulfide interchange protein DsbG compare
BWI76_RS18070 +0.5 1.2 DNA polymerase III subunit epsilon compare
BWI76_RS01995 +0.5 1.1 AraC family transcriptional regulator compare
BWI76_RS17920 +0.5 2.1 23S rRNA (guanine(745)-N(1))-methyltransferase compare
BWI76_RS04120 +0.5 2.2 metal-dependent hydrolase compare
BWI76_RS05790 +0.5 1.3 phage DNA-binding protein compare
BWI76_RS06635 +0.5 1.5 methylated-DNA--protein-cysteine methyltransferase compare
BWI76_RS12985 +0.5 1.4 transcriptional regulator compare
BWI76_RS04655 +0.5 1.7 shikimate dehydrogenase compare
BWI76_RS10055 +0.5 1.3 AraC family transcriptional regulator compare
BWI76_RS11675 +0.5 2.1 arginine N-succinyltransferase compare
BWI76_RS13130 +0.5 1.9 phenylacetic acid degradation protein PaaD compare
BWI76_RS24770 +0.5 2.3 hypothetical protein compare
BWI76_RS07165 +0.5 2.3 hypothetical protein compare
BWI76_RS21810 +0.5 0.8 universal stress protein compare
BWI76_RS00370 +0.5 1.6 GTPase-activating protein compare
BWI76_RS02805 +0.5 1.8 sugar ABC transporter permease compare
BWI76_RS06915 +0.5 1.6 membrane protein compare
BWI76_RS01585 +0.5 2.7 transcriptional regulator compare
BWI76_RS23005 +0.5 1.8 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase compare
BWI76_RS07985 +0.5 0.8 fluoride ion transporter CrcB compare
BWI76_RS03595 +0.5 0.6 ethanolamine utilization protein EutM compare
BWI76_RS13820 +0.5 1.2 hypothetical protein compare
BWI76_RS25475 +0.5 3.4 TIGR02099 family protein compare
BWI76_RS26875 +0.5 1.5 dipeptide ABC transporter permease DppC compare
BWI76_RS24885 +0.5 1.2 PTS galactitol transporter subunit IIB compare
BWI76_RS16090 +0.5 1.2 two-component system response regulator DcuR compare
BWI76_RS26045 +0.5 0.8 nitrite reductase small subunit compare
BWI76_RS10575 +0.5 1.2 polar amino acid ABC transporter permease compare
BWI76_RS23470 +0.5 4.1 hypothetical protein compare
BWI76_RS15920 +0.5 1.2 hypothetical protein compare
BWI76_RS14845 +0.5 2.4 hypothetical protein compare
BWI76_RS14320 +0.5 1.8 hypothetical protein compare
BWI76_RS25365 +0.5 3.1 serine endoprotease DegQ compare
BWI76_RS02850 +0.5 2.6 metalloprotease PmbA compare
BWI76_RS20085 +0.5 2.5 GNAT family N-acetyltransferase compare
BWI76_RS12500 +0.5 1.4 dipeptide epimerase compare
BWI76_RS08715 +0.5 3.3 acyl-CoA thioesterase compare
BWI76_RS04915 +0.5 1.8 hypothetical protein compare
BWI76_RS15950 +0.5 1.1 dethiobiotin synthase compare
BWI76_RS14835 +0.5 0.6 hypothetical protein compare
BWI76_RS06335 +0.5 1.3 nucleoside-specific channel-forming protein Tsx compare
BWI76_RS16130 +0.5 2.0 3-carboxy-cis,cis-muconate cycloisomerase compare
BWI76_RS06810 +0.5 1.4 hypothetical protein compare
BWI76_RS19980 +0.5 2.2 2-keto-3-deoxy-L-rhamnonate aldolase compare
BWI76_RS26945 +0.5 2.8 hypothetical protein compare
BWI76_RS20720 +0.5 0.7 hypothetical protein compare
BWI76_RS09490 +0.5 1.8 DNA-binding response regulator compare
BWI76_RS20605 +0.5 2.2 purine-nucleoside phosphorylase compare
BWI76_RS14015 +0.5 3.0 L-2,4-diaminobutyrate decarboxylase compare
BWI76_RS14075 +0.5 1.4 TetR family transcriptional regulator compare
BWI76_RS17915 +0.5 2.8 membrane protein compare
BWI76_RS17665 +0.5 1.8 proteasome-type protease compare
BWI76_RS24595 +0.5 2.6 dihydroxyacetone kinase subunit DhaK compare
BWI76_RS22450 +0.5 1.4 selenoprotein W-related protein compare
BWI76_RS02570 +0.4 3.0 transcriptional regulator compare
BWI76_RS11810 +0.4 1.6 outer membrane protein OmpW compare
BWI76_RS27670 +0.4 1.6 LysR family transcriptional regulator compare
BWI76_RS11635 +0.4 0.9 ABC transporter compare
BWI76_RS24640 +0.4 3.5 aldolase compare
BWI76_RS27050 +0.4 2.4 hypothetical protein compare
BWI76_RS17890 +0.4 1.2 PTS mannose transporter subunit EIIAB compare
BWI76_RS15280 +0.4 1.4 sugar transporter compare
BWI76_RS11260 +0.4 1.3 hypothetical protein compare
BWI76_RS20890 +0.4 1.8 neutral zinc metallopeptidase compare
BWI76_RS07595 +0.4 1.2 putative oxidoreductase compare
BWI76_RS16970 +0.4 2.8 murein L,D-transpeptidase compare
BWI76_RS08870 +0.4 3.2 inner membrane transport permease YbhS compare
BWI76_RS19870 +0.4 1.3 malate:quinone oxidoreductase compare
BWI76_RS22940 +0.4 2.1 DNA-binding transcriptional activator FucR compare
BWI76_RS01190 +0.4 1.5 iron donor protein CyaY compare
BWI76_RS14090 +0.4 1.9 polyketide cyclase compare
BWI76_RS24820 +0.4 2.9 glycerate 2-kinase compare
BWI76_RS15150 +0.4 1.9 outer membrane efflux protein compare
BWI76_RS00715 +0.4 1.2 two-component sensor histidine kinase compare
BWI76_RS13890 +0.4 0.8 LysR family transcriptional regulator compare
BWI76_RS09035 +0.4 1.8 protein tyrosine/serine phosphatase compare
BWI76_RS03105 +0.4 0.7 myo-inosose-2 dehydratase compare
BWI76_RS01675 +0.4 1.5 putative cytoplasmic protein compare
BWI76_RS02900 +0.4 2.1 6-phosphogluconolactonase compare
BWI76_RS17645 +0.4 0.8 hypothetical protein compare
BWI76_RS13375 +0.4 2.5 protease compare
BWI76_RS12170 +0.4 1.4 hypothetical protein compare
BWI76_RS11920 +0.4 1.7 hypothetical protein compare
BWI76_RS10500 +0.4 1.3 flavoprotein monooxygenase compare
BWI76_RS27820 +0.4 0.6 ilvB operon leader peptide IvbL compare
BWI76_RS06545 +0.4 2.3 peptidylprolyl isomerase compare
BWI76_RS16475 +0.4 2.0 alkene reductase compare
BWI76_RS21675 +0.4 0.4 hypothetical protein compare
BWI76_RS18360 +0.4 0.9 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS09975 +0.4 2.3 cell division inhibitor SulA compare
BWI76_RS06465 +0.4 0.5 IclR family transcriptional regulator compare
BWI76_RS00950 +0.4 1.5 ATP-dependent protease compare
BWI76_RS08585 +0.4 1.8 nicotinamide riboside transporter PnuC compare
BWI76_RS15925 +0.4 2.5 dimethyl sulfoxide reductase subunit A compare
BWI76_RS09595 +0.4 1.7 macrolide transporter subunit MacA compare
BWI76_RS18410 +0.4 1.4 drug/metabolite exporter YedA compare
BWI76_RS21685 +0.4 0.9 hypothetical protein compare
BWI76_RS08800 +0.4 2.2 phosphoethanolamine transferase EptA compare
BWI76_RS13030 +0.4 1.7 site-specific recombinase, phage integrase family protein compare
BWI76_RS09100 +0.4 2.2 glutathione ABC transporter substrate-binding protein GsiB compare
BWI76_RS04265 +0.4 2.4 sodium:alanine symporter family protein compare
BWI76_RS20640 +0.4 1.8 cysteine synthase A compare
BWI76_RS18110 +0.4 2.0 transcriptional regulator HexR compare
BWI76_RS24890 +0.4 3.1 PTS system galactitol-specific transporter subunit IIC compare
BWI76_RS18455 +0.4 0.9 tRNA-Ser compare
BWI76_RS02635 +0.4 2.0 3-keto-L-gulonate-6-phosphate decarboxylase compare
BWI76_RS17570 +0.4 1.3 iron-sulfur-binding protein compare
BWI76_RS20430 +0.4 0.8 penicillin-insensitive murein endopeptidase compare
BWI76_RS15080 +0.4 3.3 hypothetical protein compare
BWI76_RS02680 +0.4 1.3 EamA family transporter compare
BWI76_RS08510 +0.4 2.0 cyd operon protein YbgE compare
BWI76_RS09670 +0.4 1.9 recombination factor protein RarA compare
BWI76_RS24030 +0.4 2.2 arginine decarboxylase compare
BWI76_RS04560 +0.4 1.1 holo-ACP synthase CitX compare


Specific Phenotypes

For 3 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms