Experiment set8IT066 for Phaeobacter inhibens DSM 17395

Compare to:

L-Valine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c07110 +3.1 23.1 putative sodium/alanine symporter compare
PGA1_c07120 +2.5 10.9 putative universal stress protein compare
PGA1_c24770 +2.3 7.9 putative leucine-responsive regulatory protein compare
PGA1_c20220 +1.8 6.6 acetolactate synthase isozyme 3 small subunit compare
PGA1_c34650 +1.4 2.4 UPF0090 protein YhbC compare
PGA1_c07130 +1.3 7.0 putative leucine-responsive regulatory protein conserved
PGA1_c01200 +1.3 6.7 putative phosphocarrier, HPr family compare
PGA1_c27900 +1.2 4.2 ligand-binding UTRA domain-containing protein compare
PGA1_c06280 +1.1 2.2 cytochrome c oxidase assembly protein CtaG compare
PGA1_c23500 +1.1 9.1 phosphoenolpyruvate-protein phosphotransferase PtsP compare
PGA1_c03880 +1.1 10.0 putative transcriptional activator protein RaiR compare
PGA1_c32090 +1.0 7.0 glutathione transport system permease protein GsiD compare
PGA1_c31170 +0.9 2.5 phosphotyrosine protein phosphatase-like protein compare
PGA1_65p00350 +0.9 6.0 hemolysin-like protein compare
PGA1_c07850 +0.9 4.2 transcriptional regulator, lacI family compare
PGA1_c32060 +0.8 6.3 glutathione-binding protein GsiB compare
PGA1_c13050 +0.8 4.6 Zn-dependent hydrolases, including glyoxylases compare
PGA1_c10310 +0.8 4.9 hypothetical protein compare
PGA1_c20500 +0.8 4.9 leucine dehydrogenase Ldh compare
PGA1_262p01410 +0.8 2.7 malate/L-lactate dehydrogenase-like protein compare
PGA1_78p00210 +0.8 2.1 putative oxidoreductase compare
PGA1_c32080 +0.7 5.8 glutathione transport system permease protein GsiC compare
PGA1_c32100 +0.7 5.6 glutathione import ATP-binding protein GsiA compare
PGA1_c10300 +0.7 4.1 acetyl-coenzyme A synthetase AcsA compare
PGA1_c19100 +0.7 1.5 hypothetical protein compare
PGA1_262p01170 +0.7 2.8 putative nnrS protein compare
PGA1_78p00400 +0.7 1.8 tonB dependent receptor compare
PGA1_c20490 +0.7 4.0 transcriptional regulator, AsnC family compare
PGA1_c03360 +0.7 2.8 Predicted O-methyltransferase compare
PGA1_c08590 +0.7 4.9 heme NO binding domain-containing protein compare
PGA1_c07490 +0.7 1.0 Putative sterol carrier protein compare
PGA1_c10290 +0.7 3.7 outer membrane protein compare
PGA1_c18160 +0.7 2.7 trigger factor Tig compare
PGA1_c24050 +0.7 1.9 hypothetical protein compare
PGA1_c01160 +0.7 5.5 sensor protein ChvG compare
PGA1_c09710 +0.7 1.4 putative outer membrane assembly lipoprotein compare
PGA1_c10590 +0.7 1.4 putative ATP-dependent RNA helicase RhlE compare
PGA1_c29260 +0.6 1.9 ribosomal RNA small subunit methyltransferase D compare
PGA1_c02900 +0.6 1.4 putative molybdopterin-converting factor subunit 1 compare
PGA1_c12920 +0.6 2.5 nitrilotriacetate monooxygenase component B-like protein compare
PGA1_c17680 +0.6 1.0 hypothetical protein compare
PGA1_262p00950 +0.6 3.0 thioesterase superfamily protein TdaD compare
PGA1_c08600 +0.6 4.7 diguanylate cyclase (GGDEF) domain-containing protein compare
PGA1_c13220 +0.6 4.1 putative transcriptional regulator, lacI family compare
PGA1_262p00960 +0.6 5.6 Prephenate dehydratase. compare
PGA1_262p00770 +0.6 1.1 putative lytic murein transglycosylase compare
PGA1_c05490 +0.6 2.2 ureidoglycolate hydrolase AllA compare
PGA1_c17700 +0.6 2.1 hypothetical protein compare
PGA1_262p00420 +0.6 3.2 Transcriptional regulator/sugar kinase compare
PGA1_c17030 +0.6 1.4 peptidoglycan binding domain-containing protein compare
PGA1_c17340 +0.6 4.0 acyl-CoA dehydrogenase AcdA compare
PGA1_c14760 +0.6 1.0 bifunctional enzyme IspDF compare
PGA1_c20230 +0.5 3.1 hypothetical protein compare
PGA1_c34480 +0.5 1.7 UTP--glucose-1-phosphate uridylyltransferase CelA compare
PGA1_c19050 +0.5 1.9 hypothetical protein compare
PGA1_c01170 +0.5 3.4 HPr kinase/phosphorylase-like protein compare
PGA1_c18900 +0.5 0.8 Uncharacterized conserved protein compare
PGA1_c34880 +0.5 4.5 putative response regulator compare
PGA1_c33190 +0.5 3.3 putative anti-sigma-B factor antagonist compare
PGA1_c04950 +0.5 1.0 GTP-dependent nucleic acid-binding protein EngD compare
PGA1_262p00730 +0.5 1.9 putative signal transduction histidine kinase compare
PGA1_c06630 +0.5 1.4 hypothetical protein compare
PGA1_262p01040 +0.5 2.4 periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP) compare
PGA1_c11540 +0.5 1.2 gamma-glutamylputrescine synthetase PuuA compare
PGA1_c23250 +0.5 3.1 transcriptional regulator, DeoR family compare
PGA1_c11610 +0.5 2.6 Uncharacterized protein conserved in bacteria compare
PGA1_c32910 +0.5 1.4 hypothetical protein compare
PGA1_78p00560 +0.5 1.1 Uncharacterized conserved protein compare
PGA1_c15590 +0.5 4.4 putative transcriptional activator protein compare
PGA1_c19910 +0.5 1.5 Protein of unknown function (DUF1499). compare
PGA1_c08390 +0.5 2.7 putative transcriptional regulator, AraC family compare
PGA1_c29740 +0.5 1.3 hypothetical protein compare
PGA1_c08550 +0.5 1.7 Protein of unknown function (DUF3572). compare
PGA1_c11810 +0.5 0.9 hypothetical protein compare
PGA1_c04620 +0.5 2.4 peptidyl-prolyl cis-trans isomerase, FKBP-type compare
PGA1_c11480 +0.5 2.1 Uncharacterized conserved protein compare
PGA1_c36060 +0.5 3.3 putative NAD dependent epimerase compare
PGA1_c32170 +0.5 2.1 hypothetical protein compare
PGA1_c07800 +0.4 2.8 putative transcriptional regulator, lacI family compare
PGA1_c15290 +0.4 1.5 Lactoylglutathione lyase and related lyases compare
PGA1_c17520 +0.4 2.1 putative peptidyl-prolyl cis-trans isomerase A compare
PGA1_c17660 +0.4 1.5 hypothetical protein compare
PGA1_c21580 +0.4 2.0 hypothetical protein compare
PGA1_c32930 +0.4 0.9 ribosome-binding factor A compare
PGA1_c19860 +0.4 2.3 dimethyladenosine transferase KsgA compare
PGA1_c12570 +0.4 1.1 ABC-type transport system involved in resistance to organic solvents, periplasmic component compare
PGA1_c34190 +0.4 2.5 methyltransferase-like protein compare
PGA1_c22510 +0.4 1.5 hypothetical protein compare
PGA1_c02000 +0.4 2.8 glutamate/glutamine/aspartate/asparagine transport system permease protein BztC compare
PGA1_c35970 +0.4 2.6 putative sigma(54) modulation protein compare
PGA1_c27240 +0.4 1.1 hypothetical protein compare
PGA1_c29430 +0.4 0.8 3-mercaptopyruvate sulfurtransferase compare
PGA1_c30130 +0.4 1.7 putative universal stress protein compare
PGA1_c07350 +0.4 1.6 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA compare
PGA1_c24360 +0.4 2.0 hypothetical protein compare
PGA1_c08210 +0.4 2.5 Predicted enzyme related to lactoylglutathione lyase compare
PGA1_c19180 +0.4 0.6 cytochrome c-type biogenesis protein CycH compare
PGA1_c01940 +0.4 1.5 crcB-like protein compare
PGA1_c10980 +0.4 2.9 Uncharacterized protein conserved in bacteria compare
PGA1_c14890 +0.4 1.0 Uncharacterized conserved protein compare
PGA1_c21630 +0.4 2.4 putative transcriptional regulator compare
PGA1_c33010 +0.4 1.1 glycosyltransferase-like protein compare
PGA1_c24820 +0.4 1.8 phenazine biosynthesis protein compare
PGA1_c21390 +0.4 2.0 hypothetical protein compare
PGA1_c16760 +0.4 2.9 vitamin B12-dependent ribonucleotide reductase NrdJ compare
PGA1_c02130 +0.4 1.3 conserved hypothetical protein YidD compare
PGA1_c09460 +0.4 0.8 Uncharacterized conserved small protein compare
PGA1_c18580 +0.4 1.4 hypothetical protein compare
PGA1_c22990 +0.4 1.9 Bacterial mobilisation protein (MobC). compare
PGA1_c17200 +0.4 1.0 transcriptional regulator, TetR family compare
PGA1_262p01120 +0.4 0.9 hypothetical protein compare
PGA1_c15050 +0.4 1.2 Uncharacterized enzyme involved in pigment biosynthesis compare
PGA1_78p00340 +0.4 0.9 Uncharacterized protein, possibly involved in utilization of glycolate and propanediol compare
PGA1_c04010 +0.4 1.1 putative universal stress protein compare
PGA1_c21060 +0.4 1.8 cold shock protein CspA compare
PGA1_c15680 +0.4 1.5 acyl-CoA thioesterase II compare
PGA1_c26790 +0.4 2.0 transcriptional regulator, TetR family compare
PGA1_c17420 +0.4 1.4 S-adenosylmethionine:tRNA ribosyltransferase-isomerase QueA compare
PGA1_c10690 +0.4 1.3 hypothetical protein compare
PGA1_c15790 +0.4 1.1 putative phosphate transporter, phosphate-binding protein compare
PGA1_c11030 +0.4 1.9 MoxR-like ATPases compare
PGA1_c02010 +0.4 2.3 glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD compare
PGA1_c16510 +0.4 1.5 glycosyl transferase-like protein compare
PGA1_c04730 +0.4 0.8 hypothetical protein compare
PGA1_c12990 +0.4 1.8 Peptidase propeptide and YPEB domain. compare
PGA1_c26150 +0.3 1.1 putative ETC complex I subunit compare
PGA1_c09900 +0.3 2.2 malate synthase GlcB compare
PGA1_c22500 +0.3 0.9 hypothetical protein compare
PGA1_c10260 +0.3 2.4 putative pyridoxal-phosphate-dependent aminotransferase compare
PGA1_c34100 +0.3 2.2 organic hydroperoxide resistance protein Ohr compare
PGA1_c04800 +0.3 2.3 tRNA (guanine-N(7)-)-methyltransferase TrmB compare
PGA1_262p01450 +0.3 1.4 putative membrane dipeptidase compare
PGA1_c31930 +0.3 2.7 putative transporter, MFS family compare
PGA1_c19610 +0.3 1.3 Small integral membrane protein compare
PGA1_c26060 +0.3 1.6 Domain of unknown function (DUF1772). compare
PGA1_262p01260 +0.3 0.6 copper-containing nitrite reductase NirK compare
PGA1_c18340 +0.3 1.2 putative baseplate assembly protein W compare
PGA1_c05800 +0.3 2.3 YeeE/YedE family (DUF395). compare
PGA1_c09090 +0.3 0.9 thiamine biosynthesis protein ThiS compare
PGA1_c09050 +0.3 1.5 thiamine-phosphate pyrophosphorylase ThiE compare
PGA1_c13640 +0.3 1.8 Phosphopantetheine attachment site. compare
PGA1_c22680 +0.3 1.2 Arc-like DNA binding domain. compare
PGA1_c01670 +0.3 1.2 hypothetical protein compare
PGA1_c11280 +0.3 2.0 Putative hemolysin compare
PGA1_c35260 +0.3 0.8 ATP-dependent protease HslV compare
PGA1_c23760 +0.3 1.6 putative glutathione S-transferase compare
PGA1_c19410 +0.3 2.8 transketolase-like protein compare
PGA1_c11520 +0.3 2.1 gamma-glutamylputrescine synthetase PuuA compare
PGA1_c10280 +0.3 2.6 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) compare
PGA1_c32520 +0.3 1.5 Protein of unknown function (DUF2938). compare
PGA1_c15660 +0.3 1.8 enoyl-CoA hydratase/isomerase family protein compare
PGA1_c02420 +0.3 1.7 V8-like Glu-specific endopeptidase compare
PGA1_c12780 +0.3 1.0 hypothetical protein compare
PGA1_c03530 +0.3 1.6 pyridoxamine 5'-phosphate oxidase-like protein compare
PGA1_c05200 +0.3 2.2 putative ABC transporter, inner membrane component compare
PGA1_c20240 +0.3 2.1 Helix-turn-helix. compare
PGA1_c26360 +0.3 1.4 cold shock protein compare
PGA1_c24140 +0.3 1.7 protein-tyrosine phosphatase compare
PGA1_262p02090 +0.3 1.2 response regulator receiver domain-containing protein compare
PGA1_c20920 +0.3 1.0 granule associated protein (phasin) compare
PGA1_262p01220 +0.3 1.5 nitric oxide reductase subunit B compare
PGA1_c03290 +0.3 1.0 transcription elongation factor GreA compare
PGA1_c24320 +0.3 2.3 putative capsule polysaccharide export inner-membrane protein compare
PGA1_c08820 +0.3 1.7 putative oxidoreductase compare
PGA1_c15700 +0.3 1.8 hypothetical protein compare
PGA1_c07990 +0.3 1.8 putative hydrolase, TatD family compare
PGA1_c28700 +0.3 0.8 LamB/YcsF family protein compare
PGA1_262p00510 +0.3 1.8 Predicted exonuclease of the beta-lactamase fold involved in RNA processing compare
PGA1_c02730 +0.3 2.1 sn-glycerol-3-phosphate transport system permease protein UgpE compare
PGA1_c20590 +0.3 1.1 hypothetical protein compare
PGA1_262p00760 +0.3 1.2 transcriptional regulator, AsnC family compare
PGA1_c18310 +0.3 1.6 hypothetical protein compare
PGA1_c32710 +0.3 0.7 Protein of unknown function (DUF3775). compare
PGA1_c15820 +0.3 1.6 putative phenylacetic acid degradation protein compare
PGA1_c26390 +0.3 2.2 ABC transporter, permease protein compare
PGA1_c34290 +0.3 1.1 peptide methionine sulfoxide reductase MsrA compare
PGA1_c04080 +0.3 2.1 phenylacetic acid degradation protein PaaA compare
PGA1_c17310 +0.3 2.2 putative fatty acid desaturase compare
PGA1_c22930 +0.3 1.7 hypothetical protein compare
PGA1_c08730 +0.3 1.1 hypothetical protein compare
PGA1_262p01440 +0.3 1.3 BCCT transporter compare
PGA1_c28030 +0.3 1.4 Panthothenate kinase compare
PGA1_262p00680 +0.3 1.4 Uncharacterized membrane protein compare
PGA1_c04920 +0.3 1.7 l-lactate dehydrogenase IldD compare
PGA1_c12220 +0.3 1.0 monovalent cation/proton antiporter subunit G compare
PGA1_c23590 +0.3 1.1 hypothetical protein compare
PGA1_c35700 +0.3 1.7 putative transglycosylase, SLT family compare
PGA1_c23000 +0.3 0.8 hypothetical protein compare
PGA1_c27910 +0.3 1.6 N-acetylglucosamine kinase (EC 2.7.1.59) (from data) compare
PGA1_262p01480 +0.3 0.8 transcriptional regulator, AraC family compare
PGA1_c05240 +0.3 2.0 Predicted N6-adenine-specific DNA methylase compare
PGA1_c35950 +0.3 2.4 hypothetical protein compare
PGA1_65p00430 +0.3 1.2 putative glycosyl transferase compare
PGA1_c05480 +0.3 2.0 OHCU decarboxylase domain-containing protein compare
PGA1_c06450 +0.3 1.5 short-chain dehydrogenases/reductase domain-containing protein compare
PGA1_262p00660 +0.3 1.1 Predicted periplasmic protein compare
PGA1_c15850 +0.3 1.9 Uncharacterized protein conserved in bacteria compare
PGA1_c11690 +0.3 1.7 thioesterase domain-containing protein compare
PGA1_c22070 +0.3 1.4 Cytochrome B561 compare
PGA1_c01960 +0.3 1.0 putative hydrolase compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source L-Valine in Phaeobacter inhibens DSM 17395

For nitrogen source L-Valine across organisms