Experiment set8IT066 for Shewanella oneidensis MR-1

Compare to:

LB - no RNA protect

200 most detrimental genes:

  gene name fitness t score description  
SO2986 +1.9 3.5 hypothetical protein (NCBI ptt file) compare
SO2971 +1.5 2.9 conserved hypothetical protein (NCBI ptt file) compare
SO1295 +1.4 2.9 major outer membrane lipoprotein, putative (NCBI ptt file) compare
SO_3457 +1.3 8.7 hybrid sensory histidine kinase BarA (RefSeq) compare
SO2245 dnaQ-1 +1.3 2.5 DNA polymerase III, epsilon subunit (NCBI ptt file) compare
SO2955 +1.2 5.0 conserved hypothetical protein (NCBI ptt file) compare
SO3087 +1.1 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO2998 +1.1 2.4 hypothetical protein (NCBI ptt file) compare
SO2973 +1.0 4.9 prophage LambdaSo, lysozyme, putative (NCBI ptt file) compare
SO2947 +1.0 2.4 hypothetical protein (NCBI ptt file) compare
SO2472 +1.0 2.1 D-alanyl-D-alanine carboxypeptidase-related protein (NCBI ptt file) compare
SO2991 +0.9 5.0 conserved hypothetical protein (NCBI ptt file) compare
SO1152 +0.9 1.1 hypothetical protein (NCBI ptt file) compare
SO4227 +0.9 1.0 conserved hypothetical protein TIGR00006 (NCBI ptt file) compare
SO0559 +0.9 4.4 MaoC domain protein (NCBI ptt file) compare
SOA0121 +0.8 2.5 hypothetical protein (NCBI ptt file) compare
SO1372 +0.8 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO0430 +0.8 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO1889 +0.8 1.9 hypothetical protein (NCBI ptt file) compare
SO1570 +0.8 4.8 GGDEF domain protein (NCBI ptt file) compare
SO0613 pabA +0.8 2.5 para-aminobenzoate synthase glutamine amidotransferase, component II (NCBI ptt file) compare
SO2954 +0.8 1.4 hypothetical protein (NCBI ptt file) compare
SO2720 +0.8 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO2987 +0.8 2.2 hypothetical protein (NCBI ptt file) compare
SO2678 +0.8 3.4 hypothetical protein (NCBI ptt file) compare
SO4685 +0.8 5.2 conserved hypothetical protein (NCBI ptt file) compare
SO2061 +0.7 1.7 hypothetical protein (NCBI ptt file) compare
SO1395 +0.7 2.5 membrane protein,putative (NCBI ptt file) compare
SO3003 +0.7 2.9 hypothetical protein (NCBI ptt file) compare
SO1166 +0.7 3.3 membrane-bound lytic transglycosylase, putative (NCBI ptt file) compare
SO3853 +0.7 1.4 hypothetical protein (NCBI ptt file) compare
SO4481 +0.7 2.7 hypothetical protein (NCBI ptt file) compare
SO0198.1 +0.7 2.5 putative transposase (NCBI ptt file) compare
SO1139 fklB +0.7 3.7 peptidyl-prolyl cis-trans isomerase FklB (NCBI ptt file) compare
SO2238 ptsH +0.7 1.3 phosphocarrier protein HPr (NCBI ptt file) compare
SO2014 +0.7 1.0 conserved hypothetical protein TIGR00103 (NCBI ptt file) compare
SO2208 +0.7 2.4 phosphotyrosine protein phosphatase (NCBI ptt file) compare
SO3748 +0.7 3.2 LysM domain protein (NCBI ptt file) compare
SO1320 +0.7 2.5 hypothetical protein (NCBI ptt file) compare
SO2974 +0.7 2.1 hypothetical protein (NCBI ptt file) compare
SO2159 +0.7 2.0 TonB domain protein (NCBI ptt file) compare
SO1533 +0.7 2.8 glycine cleavage system transcriptional activator, putative (NCBI ptt file) compare
SO3648 +0.7 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO1835 +0.6 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO0448 +0.6 1.3 hypothetical protein (NCBI ptt file) compare
SO0624 crp +0.6 2.8 catabolite gene activator (NCBI ptt file) compare
SO2982 +0.6 3.6 hypothetical protein (NCBI ptt file) compare
SO_2754 +0.6 2.1 no description compare
SO2943 +0.6 2.3 conserved domain protein (NCBI ptt file) compare
SO2988 +0.6 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO2584 +0.6 1.9 hypothetical protein (NCBI ptt file) compare
SO4337 +0.6 2.3 transcriptional regulator, AsnC family (NCBI ptt file) compare
SO3229 fliE +0.6 1.3 flagellar hook-basal body complex protein FliE (NCBI ptt file) compare
SO2601 +0.6 3.9 carboxyl-terminal protease (NCBI ptt file) compare
SOA0104 +0.6 1.6 hypothetical protein (NCBI ptt file) compare
SO3192 +0.6 1.5 conserved hypothetical protein (NCBI ptt file) compare
SO4369 +0.6 3.0 acyl carrier protein, putative (NCBI ptt file) compare
SO2829 +0.6 1.7 conserved domain protein (NCBI ptt file) compare
SO1581 phnA +0.6 1.3 phnA protein (NCBI ptt file) compare
SO3623 +0.6 1.8 tetraheme cytochrome c (NCBI ptt file) compare
SO2972 +0.6 3.3 hypothetical protein (NCBI ptt file) compare
SO3850 +0.6 2.2 hypothetical protein (NCBI ptt file) compare
SO2984 +0.6 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2474 +0.6 1.5 carbonic anhydrase family protein (NCBI ptt file) compare
SO0844 +0.6 1.4 hypothetical protein (NCBI ptt file) compare
SO2396 +0.6 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO2992 +0.6 3.1 hypothetical protein (NCBI ptt file) compare
SO2946 +0.5 3.6 hypothetical protein (NCBI ptt file) compare
SO2254 +0.5 3.4 conserved hypothetical protein (NCBI ptt file) compare
SO3545 +0.5 2.6 OmpA family protein (NCBI ptt file) compare
SO2976 +0.5 2.7 conserved hypothetical protein (NCBI ptt file) compare
SO3851 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
SO2659 +0.5 2.3 hypothetical protein (NCBI ptt file) compare
SO2519 +0.5 1.7 transcriptional regulator, AraC family (NCBI ptt file) compare
SO3470 +0.5 1.3 conserved hypothetical protein TIGR00244 (NCBI ptt file) compare
SO0883 +0.5 1.3 conserved hypothetical protein (NCBI ptt file) compare
SO4368 +0.5 1.8 acyl carrier protein, putative (NCBI ptt file) compare
SO1329 +0.5 2.9 adenylate cyclase-related protein (NCBI ptt file) compare
SO0769 argR +0.5 0.4 arginine repressor (NCBI ptt file) compare
SO0480 +0.5 2.3 conserved domain protein (NCBI ptt file) compare
SO4073 +0.5 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO0776 +0.5 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO0306 +0.5 3.6 hypothetical protein (NCBI ptt file) compare
SO1860 +0.5 1.9 DNA-binding response regulator, LuxR family (NCBI ptt file) compare
SO2981 +0.5 2.1 hypothetical protein (NCBI ptt file) compare
SO2514 nth +0.5 1.8 endonuclease III (NCBI ptt file) compare
SO1568 +0.5 1.1 hypothetical protein (NCBI ptt file) compare
SO2529 +0.5 2.5 hypothetical protein (NCBI ptt file) compare
SO2554 +0.5 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO3004 +0.5 2.8 prophage LambdaSo, DNA modification methyltransferase, putative (NCBI ptt file) compare
SO3115 +0.5 1.4 hypothetical protein (NCBI ptt file) compare
SO0290 +0.5 0.9 hypothetical protein (NCBI ptt file) compare
SO2835 +0.5 1.2 hypothetical protein (NCBI ptt file) compare
SO4576 +0.5 2.9 O-succinylbenzoic acid--CoA ligase, putative (NCBI ptt file) compare
SO2602 +0.5 1.5 hypothetical Activator of ProP osmoprotectant transporter (NCBI ptt file) compare
SO1953 +0.5 2.0 conserved hypothetical protein (NCBI ptt file) compare
SO4374 +0.5 3.2 histidine ammonia-lyase, putative (NCBI ptt file) compare
SO2962 +0.5 1.9 hypothetical protein (NCBI ptt file) compare
SO2945 +0.5 3.0 hypothetical protein (NCBI ptt file) compare
SO1169 +0.4 1.4 conserved hypothetical protein TIGR00246 (NCBI ptt file) compare
SO3112 yajC +0.4 1.1 preprotein translocase, YajC subunit (NCBI ptt file) compare
SO2950 +0.4 2.2 hypothetical protein (NCBI ptt file) compare
SO1817 +0.4 1.2 primosomal replication protein n'', putative (NCBI ptt file) compare
SO0695 +0.4 3.5 glutathione-regulated potassium-efflux system protein KefC, putative (NCBI ptt file) compare
SO2332 +0.4 0.8 conserved hypothetical protein (NCBI ptt file) compare
SO3864 modB +0.4 2.2 molybdenum ABC transporter, permease protein (NCBI ptt file) compare
SO2178 ccpA +0.4 2.1 cytochrome c551 peroxidase (NCBI ptt file) compare
SO4036 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO3217 fliQ +0.4 2.0 flagellar biosynthetic protein FliQ (NCBI ptt file) compare
SO2551 +0.4 2.4 transcriptional regulator-related protein (NCBI ptt file) compare
SO3641 apaH +0.4 2.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (NCBI ptt file) compare
SO3000 +0.4 2.2 conserved hypothetical protein (NCBI ptt file) compare
SO2011 +0.4 2.1 conserved hypothetical protein (NCBI ptt file) compare
SO2435 +0.4 1.6 methyltransferase, putative (NCBI ptt file) compare
SO2190 creA +0.4 1.0 creA protein (NCBI ptt file) compare
SO2672 +0.4 2.4 conserved hypothetical protein (NCBI ptt file) compare
SO2239 +0.4 1.1 conserved hypothetical protein (NCBI ptt file) compare
SO4035 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO3045.2 +0.4 2.0 hypothetical methyl-accepting chemotaxis protein (NCBI ptt file) compare
SO_1223 serB +0.4 3.0 phosphoserine phosphatase (RefSeq) compare
SO2983 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO4379 +0.4 2.4 hypothetical protein (NCBI ptt file) compare
SO1946 phoP +0.4 2.1 transcriptional regulatory protein PhoP (NCBI ptt file) compare
SO1717 +0.4 1.6 hypothetical protein (NCBI ptt file) compare
SO2420 sppA +0.4 1.3 signal peptide peptidase SppA, 67K type (NCBI ptt file) compare
SO_1054 +0.4 1.5 no description compare
SO0084 +0.4 2.2 HAD-superfamily hydrolase, subfamily IA, variant 1 family protein (NCBI ptt file) compare
SO0600 amiB +0.4 1.0 N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) compare
SO0936 +0.4 1.5 transcriptional regulator (NCBI ptt file) compare
SO2691 +0.4 1.4 hypothetical protein (NCBI ptt file) compare
SO0070 natA +0.4 1.7 ATP-binding transport protein NatA (NCBI ptt file) compare
SO2979 +0.4 2.7 hypothetical protein (NCBI ptt file) compare
SO3008 +0.4 2.0 hypothetical protein (NCBI ptt file) compare
SO0445 +0.4 2.4 hflC protein, putative (NCBI ptt file) compare
SO1260 +0.4 0.9 hypothetical amino acid ABC transporter (NCBI ptt file) compare
SO2975 +0.4 2.2 hypothetical protein (NCBI ptt file) compare
SO0689 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO3191 +0.4 2.5 chain length determinant protein (NCBI ptt file) compare
SO2958 +0.4 1.2 conserved hypothetical protein (NCBI ptt file) compare
SO0177 +0.4 2.6 HAD-superfamily hydrolase, subfamily IA, variant 3 protein family (NCBI ptt file) compare
SO4191 +0.4 1.7 DedA family protein (NCBI ptt file) compare
SO3270 +0.4 1.2 polysaccharide biosynthesis protein (NCBI ptt file) compare
SO0661 +0.4 1.4 zinc finger-related protein (NCBI ptt file) compare
SO1671 +0.4 1.8 Maleylacetoacetate isomerase (EC 5.2.1.2) (from data) compare
SO4011 +0.4 1.9 conserved hypothetical protein (NCBI ptt file) compare
SO2072 hisC +0.4 2.2 histidinol-phosphate aminotransferase (NCBI ptt file) compare
SO2699 +0.4 1.8 prophage MuSo2, 43 kDa tail protein, putative (NCBI ptt file) compare
SO4373 +0.4 2.4 glycosyl transferase, group 2 family protein (NCBI ptt file) compare
SO4114 mshJ +0.4 1.6 MSHA biogenesis protein MshJ (NCBI ptt file) compare
SO3263 +0.4 2.4 3-oxoacyl-(acyl-carrier-protein) reductase, putative (NCBI ptt file) compare
SO3005 +0.4 1.4 conserved hypothetical protein (NCBI ptt file) compare
SO0563 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO0536 +0.4 1.8 redox-active disulfide protein 2 (NCBI ptt file) compare
SO2974.1 +0.4 2.1 hypothetical protein (NCBI ptt file) compare
SO0767 +0.4 1.4 transcriptional regulator, LysR family (NCBI ptt file) compare
SO3314 +0.4 1.6 fimbrial biogenesis and twitching motility protein, putative (NCBI ptt file) compare
SO3862 modE +0.4 2.4 molybdenum transport regulatory protein ModE (NCBI ptt file) compare
SO2193 +0.4 1.9 DNA-binding response regulator (NCBI ptt file) compare
SO3157 +0.4 2.6 lipoprotein, putative (NCBI ptt file) compare
SO0481 +0.4 2.1 peptidyl-prolyl cis-trans isomerase, FKBP-type (NCBI ptt file) compare
SO2830 +0.4 1.2 hypothetical protein (NCBI ptt file) compare
SO2858 +0.4 0.7 conserved hypothetical protein (NCBI ptt file) compare
SO1669 tyrR +0.4 2.1 transcriptional regulatory protein TyrR (NCBI ptt file) compare
SO1578 +0.4 1.3 transcriptional regulator, TetR family (NCBI ptt file) compare
SO2220 +0.4 1.0 MutT/nudix family protein (NCBI ptt file) compare
SO0978 +0.4 2.4 FAD-dependent glycerol-3-phosphate dehydrogenase, family protein (NCBI ptt file) compare
SO4229 +0.4 1.0 hypothetical protein (NCBI ptt file) compare
SO0347 +0.4 1.6 acyltransferase family protein (NCBI ptt file) compare
SO_2233 +0.4 1.1 no description compare
SO1925 +0.4 1.5 HlyD family secretion protein (NCBI ptt file) compare
SO3159 +0.4 2.3 conserved hypothetical protein (NCBI ptt file) compare
SO3474 +0.4 1.7 metallo-beta-lactamase family protein (NCBI ptt file) compare
SO3158 +0.4 1.3 polysaccharide synthesis-related protein (NCBI ptt file) compare
SO1762 +0.4 1.3 transcriptional regulator, AraC/XylS family (NCBI ptt file) compare
SO_1113 +0.4 1.3 no description compare
SO4530 +0.4 1.8 hypothetical protein (NCBI ptt file) compare
SO3151 +0.4 1.0 conserved hypothetical protein (NCBI ptt file) compare
SO4383 fabF-2 +0.4 2.4 3-oxoacyl-(acyl-carrier-protein) synthase II (NCBI ptt file) compare
SO4376 +0.4 2.5 hypothetical protein (NCBI ptt file) compare
SO3172 +0.4 1.0 galactosyl transferase (NCBI ptt file) compare
SO4050 +0.4 1.6 conserved hypothetical protein (NCBI ptt file) compare
SO2277 ibpA +0.4 0.8 16 kDa heat shock protein A (NCBI ptt file) compare
SO4623 +0.4 1.7 DNA-binding response regulator (NCBI ptt file) compare
SO3755 +0.4 1.7 hypothetical protein (NCBI ptt file) compare
SO0797 +0.4 1.5 hypothetical protein (NCBI ptt file) compare
SO0638 +0.3 1.6 hypothetical protein (NCBI ptt file) compare
SO1960 +0.3 0.9 conserved hypothetical protein (NCBI ptt file) compare
SO0522 mscL +0.3 1.6 large conductance mechanosensitive channel protein (NCBI ptt file) compare
SO2144 +0.3 1.7 conserved hypothetical protein (NCBI ptt file) compare
SO_1467 +0.3 1.0 no description compare
SO0453 fkbP-1 +0.3 1.5 peptidyl-prolyl cis-trans isomerase FkbP (NCBI ptt file) compare
SO0643 +0.3 2.5 transposase, putative (NCBI ptt file) compare
SO0513 +0.3 0.7 prokaryotic and mitochondrial release factors family protein (NCBI ptt file) compare
SO2009 +0.3 1.8 conserved hypothetical protein (NCBI ptt file) compare
SO_A0107 +0.3 2.9 no description compare
SO2969 +0.3 1.0 prophage LambdaSo, holin, putative (NCBI ptt file) compare
SO3177 +0.3 2.9 formyl transferase domain protein (NCBI ptt file) compare
SO1605 +0.3 1.6 lipoprotein, putative (NCBI ptt file) compare
SO3340 +0.3 2.5 hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) compare
SO0928 +0.3 1.8 GGDEF domain protein (NCBI ptt file) compare


Specific Phenotypes

None in this experiment

For Shewanella oneidensis MR-1 in rnaprotect test experiments