Experiment set8IT066 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x; and D-Glucose 20mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS04675 -9.2 -6.3 3-isopropylmalate dehydrogenase compare
BWI76_RS18925 -8.6 -5.9 histidinol dehydrogenase compare
BWI76_RS13920 -8.1 -5.6 magnesium-translocating P-type ATPase compare
BWI76_RS04470 -8.0 -7.8 carbamoyl phosphate synthase large subunit compare
BWI76_RS18920 -7.8 -5.4 ATP phosphoribosyltransferase compare
BWI76_RS00805 -7.7 -6.7 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS07070 -7.7 -5.3 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS05835 -7.6 -5.3 gamma-glutamyl-phosphate reductase compare
BWI76_RS01615 -7.5 -8.9 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS07065 -7.4 -8.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS18950 -7.4 -6.6 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS00855 -7.3 -10.0 argininosuccinate lyase compare
BWI76_RS23220 -7.3 -9.9 amino-acid N-acetyltransferase compare
BWI76_RS08385 -7.2 -4.1 citrate (Si)-synthase compare
BWI76_RS18930 -7.2 -5.0 histidinol-phosphate transaminase compare
BWI76_RS20355 -7.2 -4.0 colicin V production protein compare
BWI76_RS11855 -7.1 -7.0 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS24400 -7.1 -4.9 outer membrane channel protein TolC compare
BWI76_RS21475 -7.0 -7.0 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS18935 -6.9 -8.0 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS05015 -6.8 -4.7 transcriptional regulator compare
BWI76_RS27385 -6.8 -8.1 orotate phosphoribosyltransferase compare
BWI76_RS04670 -6.7 -12.1 3-isopropylmalate dehydratase large subunit compare
BWI76_RS04160 -6.7 -8.9 phosphoserine phosphatase compare
BWI76_RS21265 -6.6 -14.9 phosphoribosylformylglycinamidine synthase compare
BWI76_RS19845 -6.5 -7.9 phosphatase compare
BWI76_RS26085 -6.5 -4.5 3-dehydroquinate synthase compare
BWI76_RS04465 -6.4 -5.9 carbamoyl-phosphate synthase small subunit compare
BWI76_RS05840 -6.4 -7.6 glutamate 5-kinase compare
BWI76_RS00850 -6.4 -9.0 acetylglutamate kinase compare
BWI76_RS20965 -6.3 -4.8 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS04250 -6.3 -8.0 homoserine kinase compare
BWI76_RS00990 -6.3 -10.2 ketol-acid reductoisomerase compare
BWI76_RS25215 -6.2 -5.6 phospholipid-binding protein MlaC compare
BWI76_RS23920 -6.1 -8.3 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS04685 -6.0 -11.8 putative leucine operon leader peptide compare
BWI76_RS23360 -6.0 -5.8 diaminopimelate decarboxylase compare
BWI76_RS04665 -5.9 -22.7 3-isopropylmalate dehydratase small subunit compare
BWI76_RS04255 -5.9 -12.6 threonine synthase compare
BWI76_RS20895 -5.8 -5.5 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS11860 -5.8 -9.5 anthranilate synthase component I compare
BWI76_RS21465 -5.7 -4.6 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS25230 -5.7 -8.4 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS20350 -5.7 -5.6 amidophosphoribosyltransferase compare
BWI76_RS20475 -5.6 -5.6 phospholipid-binding lipoprotein MlaA compare
BWI76_RS23265 -5.6 -4.5 hypothetical protein compare
BWI76_RS04645 -5.6 -5.8 3-dehydroquinase compare
BWI76_RS03010 -5.6 -8.6 ornithine carbamoyltransferase compare
BWI76_RS01200 -5.6 -3.8 diaminopimelate epimerase compare
BWI76_RS04245 -5.5 -15.1 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS24285 -5.5 -7.2 cystathionine beta-lyase compare
BWI76_RS11965 -5.4 -4.7 orotidine-5'-phosphate decarboxylase compare
BWI76_RS10990 -5.4 -5.3 dihydroorotase compare
BWI76_RS11840 -5.4 -4.6 tryptophan synthase subunit alpha compare
BWI76_RS18955 -5.4 -8.2 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS26570 -5.3 -5.2 anion permease compare
BWI76_RS23365 -5.3 -7.5 LysR family transcriptional regulator compare
BWI76_RS09755 -5.3 -9.5 phosphoserine transaminase compare
BWI76_RS01610 -5.2 -4.9 phosphoribosylamine--glycine ligase compare
BWI76_RS18940 -5.2 -6.4 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS25115 -5.1 -8.7 argininosuccinate synthase compare
BWI76_RS25225 -5.1 -10.3 ABC transporter permease compare
BWI76_RS01655 -5.0 -6.2 homoserine O-succinyltransferase compare
BWI76_RS09635 -4.9 -3.4 amino acid ABC transporter ATP-binding protein compare
BWI76_RS25220 -4.9 -4.5 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS06525 -4.9 -4.8 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS00975 -4.9 -7.2 dihydroxy-acid dehydratase compare
BWI76_RS00845 -4.8 -6.0 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS00985 -4.8 -7.9 transcriptional regulator IlvY compare
BWI76_RS09910 -4.8 -16.3 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS00835 -4.7 -13.4 phosphoenolpyruvate carboxylase compare
BWI76_RS00400 -4.7 -3.2 glutamine synthetase compare
BWI76_RS04680 -4.7 -11.9 2-isopropylmalate synthase compare
BWI76_RS01210 -4.7 -3.6 tyrosine recombinase XerC compare
BWI76_RS11850 -4.6 -6.4 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS27390 -4.6 -6.1 ribonuclease PH compare
BWI76_RS00785 -4.6 -5.8 cystathionine gamma-synthase compare
BWI76_RS02995 -4.5 -12.1 aspartate carbamoyltransferase compare
BWI76_RS01800 -4.4 -6.2 glucose-6-phosphate isomerase compare
BWI76_RS04530 -4.3 -3.0 peptidylprolyl isomerase SurA compare
BWI76_RS00980 -4.3 -9.7 PLP-dependent threonine dehydratase compare
BWI76_RS25645 -4.2 -7.5 shikimate dehydrogenase compare
BWI76_RS04510 -4.2 -3.6 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS20435 -4.1 -2.3 chorismate synthase compare
BWI76_RS04240 -4.1 -3.7 thr operon leader peptide compare
BWI76_RS27310 -4.0 -13.5 glycosyltransferase compare
BWI76_RS01330 -4.0 -4.9 twin-arginine translocase subunit TatC compare
BWI76_RS09645 -4.0 -2.8 thioredoxin-disulfide reductase compare
BWI76_RS11845 -3.9 -4.4 tryptophan synthase subunit beta compare
BWI76_RS15115 -3.9 -6.4 MFS transporter compare
BWI76_RS20650 -3.9 -2.7 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS18140 -3.8 -5.0 zinc ABC transporter permease compare
BWI76_RS23230 -3.6 -2.5 exodeoxyribonuclease V subunit beta compare
BWI76_RS26000 -3.6 -6.0 aspartate aminotransferase family protein compare
BWI76_RS23240 -3.5 -3.4 exonuclease V subunit gamma compare
BWI76_RS02530 -3.5 -3.9 tRNA dimethylallyltransferase compare
BWI76_RS09760 -3.5 -4.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS19840 -3.5 -2.0 hypothetical protein compare
BWI76_RS09660 -3.4 -2.3 DNA translocase FtsK compare
BWI76_RS02735 -3.4 -5.3 3'(2'),5'-bisphosphate nucleotidase CysQ compare
BWI76_RS23480 -3.4 -15.0 EAL domain-containing protein compare
BWI76_RS00960 -3.3 -6.6 acetolactate synthase 2 catalytic subunit compare
BWI76_RS00180 -3.2 -2.4 F0F1 ATP synthase subunit epsilon compare
BWI76_RS25065 -3.1 -2.9 polyribonucleotide nucleotidyltransferase compare
BWI76_RS21070 -3.0 -2.4 outer membrane protein assembly factor BamB compare
BWI76_RS15225 -3.0 -2.1 DeoR family transcriptional regulator compare
BWI76_RS22755 -3.0 -8.2 phosphoadenosine phosphosulfate reductase compare
BWI76_RS09655 -3.0 -4.3 leucine-responsive regulatory protein compare
BWI76_RS26460 -2.9 -6.4 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS26455 -2.9 -5.3 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS06530 -2.9 -7.7 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS26670 -2.8 -7.2 two-component sensor histidine kinase compare
BWI76_RS08500 -2.8 -4.6 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS00965 -2.8 -1.9 acetolactate synthase 2 small subunit compare
BWI76_RS05260 -2.7 -2.5 chaperone compare
BWI76_RS18130 -2.7 -5.8 zinc ABC transporter substrate-binding protein compare
BWI76_RS17975 -2.7 -4.5 tail-specific protease compare
BWI76_RS02815 -2.6 -4.1 fructose-bisphosphatase class I compare
BWI76_RS17720 -2.5 -1.4 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS21370 -2.5 -3.4 ATP-dependent RNA helicase SrmB compare
BWI76_RS00345 -2.5 -3.6 protein disulfide oxidoreductase DsbA compare
BWI76_RS18135 -2.5 -5.5 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS00875 -2.4 -8.3 DNA-binding transcriptional regulator FabR compare
BWI76_RS05450 -2.4 -2.7 ribonuclease HI compare
BWI76_RS26665 -2.4 -3.6 DNA-binding response regulator compare
BWI76_RS01185 -2.4 -3.6 adenylate cyclase compare
BWI76_RS17190 -2.3 -3.7 TonB system transport protein TonB compare
BWI76_RS21580 -2.3 -2.8 SsrA-binding protein compare
BWI76_RS22765 -2.3 -7.4 sulfite reductase subunit alpha compare
BWI76_RS13915 -2.3 -5.1 magnesium transport protein MgtC compare
BWI76_RS01275 -2.2 -7.6 LysR family transcriptional regulator compare
BWI76_RS21350 -2.2 -4.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS04705 -2.2 -6.7 DNA-binding transcriptional regulator FruR compare
BWI76_RS22760 -2.2 -6.6 sulfite reductase subunit beta compare
BWI76_RS24850 -2.1 -8.9 DeoR family transcriptional regulator compare
BWI76_RS02410 -2.1 -2.6 EF-P beta-lysylation protein EpmB compare
BWI76_RS04100 -2.0 -4.7 peptide chain release factor 3 compare
BWI76_RS22690 -1.9 -3.0 adenylyl-sulfate kinase compare
BWI76_RS27165 -1.9 -3.8 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS05200 -1.9 -2.8 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS08495 -1.9 -5.9 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS00355 -1.9 -3.1 DNA polymerase I compare
BWI76_RS17980 -1.9 -1.9 RNA chaperone ProQ compare
BWI76_RS01350 -1.9 -1.7 NAD(P)H-flavin reductase compare
BWI76_RS15110 -1.9 -9.7 putative excinuclease ABC subunit A compare
BWI76_RS06765 -1.9 -2.7 transcriptional regulator compare
BWI76_RS01115 -1.9 -4.5 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS26395 -1.8 -4.0 cell division protein FtsE compare
BWI76_RS01125 -1.8 -6.8 4-alpha-L-fucosyltransferase compare
BWI76_RS15835 -1.8 -1.5 hypothetical protein compare
BWI76_RS25060 -1.8 -5.0 lipoprotein NlpI compare
BWI76_RS01080 -1.7 -7.3 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS01325 -1.7 -1.3 twin-arginine translocase subunit TatB compare
BWI76_RS19805 -1.7 -2.6 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS11610 -1.7 -3.5 glutamate dehydrogenase compare
BWI76_RS08525 -1.7 -2.4 colicin transporter compare
BWI76_RS06465 -1.7 -2.4 IclR family transcriptional regulator compare
BWI76_RS25300 -1.7 -3.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS19905 -1.7 -6.1 OmpK36 porin compare
BWI76_RS05555 -1.6 -3.2 Crl family RNA polymerase assembly factor compare
BWI76_RS13595 -1.6 -3.7 transcriptional regulator compare
BWI76_RS07730 -1.6 -1.8 iron-enterobactin transporter membrane protein compare
BWI76_RS25600 -1.6 -1.4 tRNA-Thr compare
BWI76_RS15955 -1.6 -4.8 transcriptional regulator compare
BWI76_RS01110 -1.5 -5.0 TDP-fucosamine acetyltransferase compare
BWI76_RS01090 -1.5 -4.3 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS25320 -1.5 -6.5 glutamate synthase compare
BWI76_RS18360 -1.5 -1.9 aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase family protein compare
BWI76_RS06770 -1.5 -8.0 Hha toxicity attenuator compare
BWI76_RS16490 -1.5 -2.4 glutaredoxin compare
BWI76_RS16485 -1.5 -1.5 ribonuclease T compare
BWI76_RS06780 -1.5 -6.8 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS08530 -1.5 -3.0 protein TolA compare
BWI76_RS26390 -1.5 -4.9 cell division protein FtsX compare
BWI76_RS09650 -1.4 -5.4 hypothetical protein compare
BWI76_RS20160 -1.4 -3.2 NADH-quinone oxidoreductase subunit H compare
BWI76_RS25315 -1.4 -8.4 glutamate synthase large subunit compare
BWI76_RS20180 -1.4 -2.9 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS16995 -1.4 -6.6 Fe-S cluster assembly protein SufB compare
BWI76_RS26200 -1.4 -4.9 starch synthase compare
BWI76_RS19705 -1.4 -4.2 kinase compare
BWI76_RS19850 -1.4 -3.0 tRNA-Pro compare
BWI76_RS27290 -1.4 -6.6 hypothetical protein compare
BWI76_RS23885 -1.4 -1.6 2-octaprenylphenol hydroxylase compare
BWI76_RS20270 -1.4 -3.1 hypothetical protein compare
BWI76_RS09640 -1.4 -3.6 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS20440 -1.4 -1.6 50S ribosomal protein L3 N(5)-glutamine methyltransferase compare
BWI76_RS11130 -1.3 -7.0 PTS glucose transporter subunit IIBC compare
BWI76_RS20140 -1.3 -4.3 NADH-quinone oxidoreductase subunit L compare
BWI76_RS25335 -1.3 -2.9 stringent starvation protein A compare
BWI76_RS01095 -1.3 -2.8 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS10935 -1.3 -2.8 glucan biosynthesis glucosyltransferase H compare
BWI76_RS24025 -1.3 -7.2 agmatinase compare
BWI76_RS18455 -1.3 -1.7 tRNA-Ser compare
BWI76_RS08605 -1.3 -2.7 phosphoglyceromutase compare
BWI76_RS08520 -1.3 -1.6 colicin transporter TolQ compare
BWI76_RS24900 -1.2 -2.2 DeoR family transcriptional regulator compare
BWI76_RS15840 -1.2 -2.0 prophage protein compare
BWI76_RS00970 -1.2 -1.8 branched chain amino acid aminotransferase compare
BWI76_RS22650 -1.2 -3.7 lipoprotein NlpD compare


Specific Phenotypes

None in this experiment

For Klebsiella michiganensis M5al in supernatant experiments

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms