Experiment set8IT065 for Klebsiella michiganensis M5al

Compare to:

RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 20mM

200 most important genes:

  gene name fitness t score description  
BWI76_RS20965 -9.8 -5.9 phosphoribosylformylglycinamidine cyclo-ligase compare
BWI76_RS00805 -9.1 -6.3 5,10-methylenetetrahydrofolate reductase compare
BWI76_RS19845 -9.0 -8.6 phosphatase compare
BWI76_RS13920 -8.2 -5.7 magnesium-translocating P-type ATPase compare
BWI76_RS04465 -7.7 -5.3 carbamoyl-phosphate synthase small subunit compare
BWI76_RS05840 -7.6 -5.2 glutamate 5-kinase compare
BWI76_RS07070 -7.5 -5.2 5-(carboxyamino)imidazole ribonucleotide mutase compare
BWI76_RS25215 -7.5 -6.8 phospholipid-binding protein MlaC compare
BWI76_RS04675 -7.3 -8.2 3-isopropylmalate dehydrogenase compare
BWI76_RS05835 -7.3 -5.1 gamma-glutamyl-phosphate reductase compare
BWI76_RS11965 -7.3 -5.0 orotidine-5'-phosphate decarboxylase compare
BWI76_RS18950 -7.2 -6.1 imidazole glycerol phosphate synthase cyclase subunit compare
BWI76_RS25230 -7.1 -8.4 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS04250 -7.0 -7.8 homoserine kinase compare
BWI76_RS02815 -7.0 -4.5 fructose-bisphosphatase class I compare
BWI76_RS21475 -6.9 -6.8 bifunctional chorismate mutase/prephenate dehydrogenase compare
BWI76_RS04670 -6.8 -11.3 3-isopropylmalate dehydratase large subunit compare
BWI76_RS09645 -6.8 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS01615 -6.8 -10.3 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase compare
BWI76_RS07065 -6.7 -7.8 5-(carboxyamino)imidazole ribonucleotide synthase compare
BWI76_RS10990 -6.6 -3.7 dihydroorotase compare
BWI76_RS00850 -6.6 -7.0 acetylglutamate kinase compare
BWI76_RS01325 -6.5 -4.0 twin-arginine translocase subunit TatB compare
BWI76_RS25115 -6.5 -9.4 argininosuccinate synthase compare
BWI76_RS09755 -6.4 -8.4 phosphoserine transaminase compare
BWI76_RS01210 -6.4 -4.1 tyrosine recombinase XerC compare
BWI76_RS04255 -6.4 -10.6 threonine synthase compare
BWI76_RS04645 -6.3 -6.5 3-dehydroquinase compare
BWI76_RS25220 -6.2 -4.3 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS18955 -6.2 -6.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase compare
BWI76_RS09760 -6.2 -4.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
BWI76_RS26085 -6.2 -3.9 3-dehydroquinate synthase compare
BWI76_RS00990 -6.1 -8.6 ketol-acid reductoisomerase compare
BWI76_RS20355 -6.0 -3.0 colicin V production protein compare
BWI76_RS00855 -5.9 -9.9 argininosuccinate lyase compare
BWI76_RS04470 -5.9 -10.5 carbamoyl phosphate synthase large subunit compare
BWI76_RS24400 -5.9 -8.1 outer membrane channel protein TolC compare
BWI76_RS18940 -5.9 -4.5 imidazole glycerol phosphate synthase subunit HisH compare
BWI76_RS18930 -5.9 -3.8 histidinol-phosphate transaminase compare
BWI76_RS21265 -5.9 -12.4 phosphoribosylformylglycinamidine synthase compare
BWI76_RS01800 -5.9 -5.7 glucose-6-phosphate isomerase compare
BWI76_RS18920 -5.8 -4.1 ATP phosphoribosyltransferase compare
BWI76_RS26570 -5.8 -4.0 anion permease compare
BWI76_RS18935 -5.8 -6.5 bifunctional imidazole glycerol-phosphate dehydratase/histidinol phosphatase compare
BWI76_RS04510 -5.6 -3.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS24285 -5.6 -7.1 cystathionine beta-lyase compare
BWI76_RS00975 -5.6 -10.4 dihydroxy-acid dehydratase compare
BWI76_RS04665 -5.5 -19.0 3-isopropylmalate dehydratase small subunit compare
BWI76_RS01330 -5.5 -5.3 twin-arginine translocase subunit TatC compare
BWI76_RS20895 -5.4 -6.2 phosphoribosylaminoimidazolesuccinocarboxamide synthase compare
BWI76_RS00980 -5.4 -9.9 PLP-dependent threonine dehydratase compare
BWI76_RS19840 -5.4 -2.0 hypothetical protein compare
BWI76_RS03010 -5.3 -6.7 ornithine carbamoyltransferase compare
BWI76_RS23265 -5.3 -3.9 hypothetical protein compare
BWI76_RS18925 -5.2 -7.8 histidinol dehydrogenase compare
BWI76_RS00965 -5.2 -1.9 acetolactate synthase 2 small subunit compare
BWI76_RS00785 -5.1 -8.0 cystathionine gamma-synthase compare
BWI76_RS23220 -5.1 -7.3 amino-acid N-acetyltransferase compare
BWI76_RS01655 -5.1 -7.0 homoserine O-succinyltransferase compare
BWI76_RS23365 -5.1 -7.8 LysR family transcriptional regulator compare
BWI76_RS06525 -5.1 -6.4 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS04160 -5.0 -6.1 phosphoserine phosphatase compare
BWI76_RS05015 -5.0 -3.8 transcriptional regulator compare
BWI76_RS11850 -5.0 -6.6 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase compare
BWI76_RS25600 -5.0 -1.8 tRNA-Thr compare
BWI76_RS21465 -4.9 -4.8 bifunctional chorismate mutase/prephenate dehydratase compare
BWI76_RS15115 -4.8 -3.3 MFS transporter compare
BWI76_RS20475 -4.8 -4.1 phospholipid-binding lipoprotein MlaA compare
BWI76_RS04685 -4.8 -11.0 putative leucine operon leader peptide compare
BWI76_RS04245 -4.8 -12.7 bifunctional aspartate kinase/homoserine dehydrogenase I compare
BWI76_RS11860 -4.8 -8.0 anthranilate synthase component I compare
BWI76_RS11845 -4.8 -2.8 tryptophan synthase subunit beta compare
BWI76_RS23920 -4.7 -4.6 D-3-phosphoglycerate dehydrogenase compare
BWI76_RS18130 -4.7 -2.5 zinc ABC transporter substrate-binding protein compare
BWI76_RS09910 -4.7 -17.2 dihydroorotate dehydrogenase (quinone) compare
BWI76_RS20350 -4.7 -6.7 amidophosphoribosyltransferase compare
BWI76_RS00845 -4.7 -7.6 N-acetyl-gamma-glutamyl-phosphate reductase compare
BWI76_RS01610 -4.6 -6.2 phosphoribosylamine--glycine ligase compare
BWI76_RS02995 -4.5 -8.3 aspartate carbamoyltransferase compare
BWI76_RS17720 -4.5 -1.7 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS00400 -4.3 -2.7 glutamine synthetase compare
BWI76_RS18135 -4.3 -8.0 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS08385 -4.2 -3.4 citrate (Si)-synthase compare
BWI76_RS26665 -4.2 -3.4 DNA-binding response regulator compare
BWI76_RS04240 -4.2 -2.8 thr operon leader peptide compare
BWI76_RS11855 -4.1 -4.6 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase compare
BWI76_RS23885 -4.1 -2.0 2-octaprenylphenol hydroxylase compare
BWI76_RS00835 -4.1 -14.1 phosphoenolpyruvate carboxylase compare
BWI76_RS25225 -4.1 -4.2 ABC transporter permease compare
BWI76_RS04680 -4.0 -9.8 2-isopropylmalate synthase compare
BWI76_RS23240 -4.0 -2.8 exonuclease V subunit gamma compare
BWI76_RS21070 -4.0 -2.7 outer membrane protein assembly factor BamB compare
BWI76_RS25645 -3.9 -6.9 shikimate dehydrogenase compare
BWI76_RS06530 -3.9 -4.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS27385 -3.8 -5.4 orotate phosphoribosyltransferase compare
BWI76_RS11840 -3.8 -2.8 tryptophan synthase subunit alpha compare
BWI76_RS20650 -3.7 -2.6 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS27310 -3.6 -7.9 glycosyltransferase compare
BWI76_RS00985 -3.6 -5.8 transcriptional regulator IlvY compare
BWI76_RS27390 -3.6 -3.7 ribonuclease PH compare
BWI76_RS06765 -3.5 -3.6 transcriptional regulator compare
BWI76_RS23480 -3.5 -12.0 EAL domain-containing protein compare
BWI76_RS23230 -3.4 -2.3 exodeoxyribonuclease V subunit beta compare
BWI76_RS26670 -3.3 -6.5 two-component sensor histidine kinase compare
BWI76_RS00345 -3.3 -4.5 protein disulfide oxidoreductase DsbA compare
BWI76_RS18140 -3.2 -4.2 zinc ABC transporter permease compare
BWI76_RS23360 -3.2 -2.7 diaminopimelate decarboxylase compare
BWI76_RS01350 -3.1 -1.6 NAD(P)H-flavin reductase compare
BWI76_RS19905 -3.1 -3.7 OmpK36 porin compare
BWI76_RS02530 -3.1 -3.5 tRNA dimethylallyltransferase compare
BWI76_RS26000 -3.1 -6.3 aspartate aminotransferase family protein compare
BWI76_RS15225 -3.0 -1.8 DeoR family transcriptional regulator compare
BWI76_RS26460 -3.0 -6.7 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS00875 -2.9 -6.9 DNA-binding transcriptional regulator FabR compare
BWI76_RS26455 -2.9 -3.9 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS13915 -2.9 -5.9 magnesium transport protein MgtC compare
BWI76_RS20435 -2.8 -1.9 chorismate synthase compare
BWI76_RS16490 -2.7 -2.6 glutaredoxin compare
BWI76_RS25065 -2.6 -3.3 polyribonucleotide nucleotidyltransferase compare
BWI76_RS08500 -2.6 -4.0 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS08525 -2.6 -4.5 colicin transporter compare
BWI76_RS24850 -2.6 -5.9 DeoR family transcriptional regulator compare
BWI76_RS17975 -2.5 -5.3 tail-specific protease compare
BWI76_RS04705 -2.5 -6.0 DNA-binding transcriptional regulator FruR compare
BWI76_RS24900 -2.5 -2.2 DeoR family transcriptional regulator compare
BWI76_RS00720 -2.4 -3.1 DNA-binding response regulator compare
BWI76_RS00960 -2.4 -3.2 acetolactate synthase 2 catalytic subunit compare
BWI76_RS20160 -2.4 -2.9 NADH-quinone oxidoreductase subunit H compare
BWI76_RS06780 -2.4 -5.5 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS14935 -2.4 -1.7 NIPSNAP family containing protein compare
BWI76_RS05260 -2.4 -1.9 chaperone compare
BWI76_RS07185 -2.4 -1.6 hypothetical protein compare
BWI76_RS15110 -2.3 -10.8 putative excinuclease ABC subunit A compare
BWI76_RS19805 -2.3 -3.0 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS21350 -2.3 -2.5 anti-RNA polymerase sigma factor SigE compare
BWI76_RS01185 -2.3 -2.6 adenylate cyclase compare
BWI76_RS15955 -2.2 -4.0 transcriptional regulator compare
BWI76_RS00970 -2.2 -2.6 branched chain amino acid aminotransferase compare
BWI76_RS05555 -2.2 -3.9 Crl family RNA polymerase assembly factor compare
BWI76_RS21000 -2.2 -5.1 exopolyphosphatase compare
BWI76_RS22650 -2.1 -4.7 lipoprotein NlpD compare
BWI76_RS01275 -2.1 -8.1 LysR family transcriptional regulator compare
BWI76_RS08535 -2.1 -2.5 translocation protein TolB compare
BWI76_RS00180 -2.1 -1.6 F0F1 ATP synthase subunit epsilon compare
BWI76_RS27165 -2.1 -3.3 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS09655 -2.0 -3.4 leucine-responsive regulatory protein compare
BWI76_RS25320 -2.0 -6.1 glutamate synthase compare
BWI76_RS01080 -2.0 -6.6 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS01090 -2.0 -4.7 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS09660 -2.0 -1.9 DNA translocase FtsK compare
BWI76_RS20900 -2.0 -1.9 outer membrane protein assembly factor BamC compare
BWI76_RS20380 -2.0 -1.4 tRNA pseudouridine(38-40) synthase TruA compare
BWI76_RS04530 -1.9 -1.9 peptidylprolyl isomerase SurA compare
BWI76_RS22625 -1.9 -2.1 transcriptional regulator compare
BWI76_RS01200 -1.9 -1.9 diaminopimelate epimerase compare
BWI76_RS17190 -1.9 -1.9 TonB system transport protein TonB compare
BWI76_RS06775 -1.9 -7.9 multidrug efflux RND transporter permease subunit compare
BWI76_RS21165 -1.9 -2.0 Fe-S cluster assembly transcriptional regulator IscR compare
BWI76_RS25300 -1.9 -2.9 hybrid sensor histidine kinase/response regulator compare
BWI76_RS08495 -1.8 -3.9 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS15215 -1.8 -1.5 N-acetyltransferase compare
BWI76_RS21370 -1.7 -2.6 ATP-dependent RNA helicase SrmB compare
BWI76_RS01095 -1.7 -2.1 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS12950 -1.7 -4.6 acriflavin resistance protein AcrA compare
BWI76_RS16215 -1.7 -3.2 hypothetical protein compare
BWI76_RS27290 -1.7 -5.6 hypothetical protein compare
BWI76_RS21450 -1.7 -1.5 23S rRNA pseudouridine(1911/1915/1917) synthase compare
BWI76_RS09635 -1.6 -1.7 amino acid ABC transporter ATP-binding protein compare
BWI76_RS20150 -1.6 -2.0 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS04305 -1.6 -1.2 molecular chaperone DnaJ compare
BWI76_RS01135 -1.6 -4.0 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS12955 -1.6 -6.8 multidrug efflux RND transporter permease subunit OqxB compare
BWI76_RS27430 -1.6 -1.3 (p)ppGpp synthetase compare
BWI76_RS16990 -1.6 -4.7 ABC transporter ATP-binding protein compare
BWI76_RS04515 -1.6 -1.5 Co2+/Mg2+ efflux protein ApaG compare
BWI76_RS15760 -1.6 -1.7 hypothetical protein compare
BWI76_RS06770 -1.6 -6.0 Hha toxicity attenuator compare
BWI76_RS20130 -1.6 -3.4 NADH-quinone oxidoreductase subunit N compare
BWI76_RS20170 -1.6 -3.3 NADH-quinone oxidoreductase subunit F compare
BWI76_RS01115 -1.5 -2.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS26075 -1.5 -2.0 DNA adenine methylase compare
BWI76_RS25060 -1.5 -3.7 lipoprotein NlpI compare
BWI76_RS26395 -1.5 -3.6 cell division protein FtsE compare
BWI76_RS05140 -1.5 -2.9 Fe3+-hydroxamate ABC transporter permease FhuB conserved
BWI76_RS26200 -1.5 -3.9 starch synthase compare
BWI76_RS25315 -1.5 -6.7 glutamate synthase large subunit compare
BWI76_RS20140 -1.5 -4.5 NADH-quinone oxidoreductase subunit L compare
BWI76_RS27305 -1.5 -6.2 glycosyl transferase compare
BWI76_RS22755 -1.5 -4.1 phosphoadenosine phosphosulfate reductase compare
BWI76_RS09615 -1.5 -2.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
BWI76_RS21345 -1.5 -1.3 sigma-E factor regulatory protein RseB compare
BWI76_RS20135 -1.4 -3.9 NADH-quinone oxidoreductase subunit M compare
BWI76_RS24280 -1.4 -2.7 biopolymer transporter ExbB compare
BWI76_RS22690 -1.4 -2.3 adenylyl-sulfate kinase compare
BWI76_RS08720 -1.4 -1.9 imidazolonepropionase compare
BWI76_RS09190 -1.4 -4.1 hypothetical protein compare
BWI76_RS00390 -1.4 -2.9 two-component system sensor histidine kinase NtrB compare
BWI76_RS13595 -1.4 -3.0 transcriptional regulator compare
BWI76_RS27475 -1.4 -7.1 regulatory protein GntR family protein compare
BWI76_RS21075 -1.4 -1.4 membrane protein compare


Specific Phenotypes

For 1 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms