Experiment set8IT065 for Ralstonia sp. UNC404CL21Col

Compare to:

Protocatechuic Acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS15800 -5.2 -5.1 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS01110 -4.9 -4.7 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS14505 -4.7 -4.6 phosphoribosylanthranilate isomerase compare
ABZR87_RS15775 -4.7 -4.5 4-carboxymuconolactone decarboxylase compare
ABZR87_RS10165 -4.6 -12.7 RNA polymerase sigma factor RpoE compare
ABZR87_RS05200 -4.6 -11.5 homoserine O-acetyltransferase compare
ABZR87_RS15795 -4.5 -7.5 CoA transferase subunit B compare
ABZR87_RS14530 -4.5 -4.3 3-isopropylmalate dehydrogenase compare
ABZR87_RS07360 -4.4 -11.6 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14540 -4.4 -5.2 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS12090 -4.3 -4.2 protocatechuate 3,4-dioxygenase subunit alpha compare
ABZR87_RS15790 -4.3 -4.2 3-oxoadipyl-CoA thiolase compare
ABZR87_RS14500 -4.3 -9.9 tryptophan synthase subunit beta compare
ABZR87_RS02160 -4.3 -5.1 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS12085 -4.3 -11.6 protocatechuate 3,4-dioxygenase subunit beta conserved
ABZR87_RS15785 -4.2 -9.0 3-carboxy-cis,cis-muconate cycloisomerase conserved
ABZR87_RS09450 -4.2 -7.6 prephenate dehydratase compare
ABZR87_RS02565 -4.2 -4.1 glutamate synthase subunit beta compare
ABZR87_RS02640 -4.2 -14.6 diaminopimelate decarboxylase compare
ABZR87_RS01240 -4.2 -10.8 catalase/peroxidase HPI compare
ABZR87_RS00200 -4.2 -4.9 phosphoadenylyl-sulfate reductase compare
ABZR87_RS00205 -4.1 -5.5 DUF934 domain-containing protein compare
ABZR87_RS22970 -4.1 -11.2 cystathionine gamma-synthase family protein compare
ABZR87_RS13250 -4.1 -2.8 phosphoserine phosphatase SerB compare
ABZR87_RS02570 -4.1 -17.1 glutamate synthase-related protein compare
ABZR87_RS00190 -4.1 -9.8 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS14490 -4.0 -6.1 tryptophan synthase subunit alpha compare
ABZR87_RS02595 -4.0 -9.9 shikimate kinase compare
ABZR87_RS01810 -4.0 -2.7 glutamate 5-kinase compare
ABZR87_RS20875 -3.9 -5.9 LysR family transcriptional regulator compare
ABZR87_RS13790 -3.8 -5.8 chorismate synthase compare
ABZR87_RS02140 -3.8 -15.0 anthranilate synthase component I compare
ABZR87_RS02155 -3.7 -5.7 anthranilate phosphoribosyltransferase compare
ABZR87_RS14950 -3.7 -4.3 acetolactate synthase small subunit compare
ABZR87_RS11440 -3.7 -6.6 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS06770 -3.7 -6.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS11860 -3.7 -8.0 RIP metalloprotease RseP compare
ABZR87_RS09465 -3.6 -6.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS14535 -3.6 -5.9 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS16170 -3.6 -5.4 argininosuccinate lyase compare
ABZR87_RS02655 -3.5 -10.5 anti-sigma factor compare
ABZR87_RS20880 -3.5 -8.3 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS15780 -3.5 -5.2 3-oxoadipate enol-lactonase conserved
ABZR87_RS05100 -3.5 -3.4 RNA polymerase-binding protein DksA compare
ABZR87_RS00210 -3.5 -7.0 nitrite/sulfite reductase compare
ABZR87_RS09445 -3.4 -10.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS01645 -3.4 -5.1 type II 3-dehydroquinate dehydratase compare
ABZR87_RS01425 -3.4 -7.4 ferric iron uptake transcriptional regulator compare
ABZR87_RS00435 -3.3 -5.0 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS21815 -3.2 -1.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS17310 -3.2 -7.9 PadR family transcriptional regulator compare
ABZR87_RS07380 -3.2 -7.7 FAD/FMN-binding oxidoreductase compare
ABZR87_RS11940 -3.2 -4.8 SsrA-binding protein SmpB compare
ABZR87_RS16080 -3.2 -4.2 P-II family nitrogen regulator compare
ABZR87_RS08630 -3.1 -9.3 dihydroorotase compare
ABZR87_RS01615 -3.1 -1.6 RNB domain-containing ribonuclease compare
ABZR87_RS09635 -3.1 -2.1 ribosome small subunit-dependent GTPase A compare
ABZR87_RS13285 -3.1 -12.9 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS02590 -3.0 -8.8 3-dehydroquinate synthase compare
ABZR87_RS00835 -3.0 -5.7 argininosuccinate synthase compare
ABZR87_RS05350 -3.0 -3.6 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS02145 -3.0 -2.0 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS05170 -2.9 -2.8 acetylglutamate kinase compare
ABZR87_RS21285 -2.9 -3.3 TetR/AcrR family transcriptional regulator compare
ABZR87_RS15750 -2.9 -11.0 ABC transporter substrate-binding protein conserved
ABZR87_RS05305 -2.9 -9.5 TetR family transcriptional regulator compare
ABZR87_RS11675 -2.8 -3.7 disulfide bond formation protein B compare
ABZR87_RS14955 -2.7 -2.7 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS10565 -2.7 -1.9 cupin domain-containing protein compare
ABZR87_RS15770 -2.7 -11.7 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS07625 -2.7 -3.1 Holliday junction branch migration protein RuvA compare
ABZR87_RS00185 -2.7 -3.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS00285 -2.7 -3.1 acetylornithine transaminase compare
ABZR87_RS00745 -2.6 -2.2 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS04125 -2.6 -5.0 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS08625 -2.6 -1.8 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS02400 -2.6 -10.0 Do family serine endopeptidase compare
ABZR87_RS09710 -2.6 -3.4 tRNA-Arg compare
ABZR87_RS02225 -2.6 -11.7 ATP-binding protein compare
ABZR87_RS02235 -2.6 -7.4 response regulator compare
ABZR87_RS10610 -2.5 -1.7 inositol monophosphatase family protein compare
ABZR87_RS15765 -2.5 -9.3 branched-chain amino acid ABC transporter permease conserved
ABZR87_RS09935 -2.5 -3.4 amino acid aminotransferase compare
ABZR87_RS09460 -2.4 -6.7 prephenate dehydrogenase compare
ABZR87_RS00195 -2.4 -3.1 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS22920 -2.4 -3.9 phosphogluconate dehydratase compare
ABZR87_RS15755 -2.4 -7.8 ABC transporter ATP-binding protein conserved
ABZR87_RS04865 -2.4 -4.2 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS07475 -2.3 -14.1 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABZR87_RS17240 -2.3 -9.8 alkyl hydroperoxide reductase subunit F compare
ABZR87_RS21795 -2.3 -8.1 NUDIX domain-containing protein compare
ABZR87_RS12790 -2.3 -1.6 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS00220 -2.3 -9.5 CysB family HTH-type transcriptional regulator compare
ABZR87_RS07665 -2.2 -9.8 aminopeptidase P N-terminal domain-containing protein compare
ABZR87_RS11245 -2.2 -5.8 translational GTPase TypA compare
ABZR87_RS14115 -2.0 -3.2 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS02075 -2.0 -2.6 23S ribosomal RNA compare
ABZR87_RS12795 -2.0 -4.2 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS12080 -2.0 -5.9 pca operon transcription factor PcaQ compare
ABZR87_RS16660 -1.9 -7.0 helix-turn-helix domain-containing protein compare
ABZR87_RS22915 -1.9 -10.4 glucose-6-phosphate dehydrogenase compare
ABZR87_RS04785 -1.9 -9.1 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS11815 -1.8 -8.7 [protein-PII] uridylyltransferase compare
ABZR87_RS11000 -1.8 -8.4 transaldolase compare
ABZR87_RS00150 -1.8 -8.8 leucyl aminopeptidase compare
ABZR87_RS04975 -1.7 -1.6 peptide deformylase compare
ABZR87_RS22690 -1.7 -3.3 XRE family transcriptional regulator compare
ABZR87_RS13445 -1.7 -5.9 phasin family protein compare
ABZR87_RS07675 -1.7 -7.2 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU compare
ABZR87_RS07620 -1.7 -4.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS11925 -1.7 -10.3 phosphoenolpyruvate synthase compare
ABZR87_RS05510 -1.6 -5.3 glutathione S-transferase compare
ABZR87_RS12785 -1.6 -1.9 endopeptidase La compare
ABZR87_RS12735 -1.6 -10.0 winged helix DNA-binding protein compare
ABZR87_RS15810 -1.6 -4.3 hypothetical protein compare
ABZR87_RS08645 -1.6 -1.0 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS13400 -1.6 -1.9 hypothetical protein compare
ABZR87_RS16735 -1.6 -12.0 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS02375 -1.6 -9.8 cytochrome c1 compare
ABZR87_RS06710 -1.6 -10.8 glutathione synthase compare
ABZR87_RS16730 -1.6 -4.8 2-methylaconitate cis-trans isomerase PrpF compare
ABZR87_RS18165 -1.6 -1.9 hypothetical protein compare
ABZR87_RS00215 -1.5 -3.4 sulfite exporter TauE/SafE family protein compare
ABZR87_RS10785 -1.5 -5.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS11760 -1.5 -1.1 membrane protein compare
ABZR87_RS02020 -1.5 -9.5 long-chain fatty acid--CoA ligase compare
ABZR87_RS08655 -1.5 -3.6 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS16250 -1.5 -3.0 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS11125 -1.5 -4.9 cell division protein ZapE compare
ABZR87_RS16165 -1.5 -0.9 anti-sigma factor compare
ABZR87_RS02480 -1.5 -1.0 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS06845 -1.5 -7.4 heme o synthase compare
ABZR87_RS02385 -1.5 -4.8 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS08950 -1.5 -4.0 transcriptional regulator NrdR compare
ABZR87_RS06725 -1.5 -11.2 phosphoenolpyruvate--protein phosphotransferase compare
ABZR87_RS01055 -1.5 -7.8 heat-inducible transcriptional repressor HrcA compare
ABZR87_RS00970 -1.4 -1.0 molecular chaperone DnaJ compare
ABZR87_RS13475 -1.4 -6.2 PAS domain S-box protein compare
ABZR87_RS11065 -1.4 -6.4 nitrogen regulation protein NR(II) compare
ABZR87_RS19675 -1.4 -1.6 cold-shock protein compare
ABZR87_RS05060 -1.4 -3.7 DUF484 family protein compare
ABZR87_RS16960 -1.3 -2.3 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS00795 -1.3 -3.8 site-specific tyrosine recombinase XerD compare
ABZR87_RS06705 -1.3 -8.3 glutamate--cysteine ligase compare
ABZR87_RS00875 -1.3 -3.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS09930 -1.3 -9.6 polyhydroxyalkanoate depolymerase compare
ABZR87_RS15405 -1.3 -2.7 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS10990 -1.3 -5.7 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB compare
ABZR87_RS15685 -1.3 -5.3 TIGR00730 family Rossman fold protein compare
ABZR87_RS05065 -1.3 -4.3 tyrosine recombinase XerC compare
ABZR87_RS06715 -1.3 -2.9 PTS sugar transporter subunit IIA compare
ABZR87_RS02035 -1.3 -4.3 substrate-binding domain-containing protein compare
ABZR87_RS02380 -1.3 -8.7 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS21095 -1.2 -1.2 TRAP transporter small permease compare
ABZR87_RS02230 -1.2 -4.5 response regulator compare
ABZR87_RS09085 -1.2 -5.6 DUF883 family protein compare
ABZR87_RS11195 -1.2 -7.3 pseudouridine synthase compare
ABZR87_RS09035 -1.2 -5.5 LacI family DNA-binding transcriptional regulator compare
ABZR87_RS09080 -1.2 -3.9 phage holin family protein compare
ABZR87_RS08970 -1.2 -4.5 protein TolQ compare
ABZR87_RS15250 -1.2 -6.7 PP2C family serine/threonine-protein phosphatase compare
ABZR87_RS20500 -1.2 -1.3 hypothetical protein compare
ABZR87_RS09945 -1.2 -7.2 recombinase compare
ABZR87_RS08585 -1.2 -2.2 chemotaxis protein CheW compare
ABZR87_RS16125 -1.2 -3.8 heme biosynthesis protein HemY compare
ABZR87_RS03195 -1.1 -8.1 cation diffusion facilitator family transporter compare
ABZR87_RS03565 -1.1 -6.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06400 -1.1 -6.9 response regulator transcription factor compare
ABZR87_RS02575 -1.1 -4.6 transposase compare
ABZR87_RS12800 -1.1 -3.4 trigger factor compare
ABZR87_RS02180 -1.1 -8.6 M61 family metallopeptidase compare
ABZR87_RS19305 -1.1 -2.8 SctK family type III secretion system sorting platform protein compare
ABZR87_RS06800 -1.1 -8.9 cytochrome c oxidase subunit I compare
ABZR87_RS06395 -1.1 -1.9 response regulator compare
ABZR87_RS16690 -1.1 -4.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13010 -1.1 -1.4 GPW/gp25 family protein compare
ABZR87_RS17145 -1.0 -7.6 AMP nucleosidase compare
ABZR87_RS22520 -1.0 -2.4 ABATE domain-containing protein compare
ABZR87_RS11070 -1.0 -5.6 nitrogen regulation protein NR(I) compare
ABZR87_RS08660 -1.0 -4.5 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS06820 -1.0 -6.2 cytochrome c oxidase subunit 3 compare
ABZR87_RS21375 -1.0 -1.6 DUF6566 family protein compare
ABZR87_RS01565 -1.0 -5.7 NADP-dependent malic enzyme compare
ABZR87_RS13290 -1.0 -2.9 3-ketoacyl-ACP reductase compare
ABZR87_RS22585 -1.0 -1.9 methyl-accepting chemotaxis protein compare
ABZR87_RS22340 -1.0 -1.6 hypothetical protein compare
ABZR87_RS11015 -1.0 -4.8 amino-acid N-acetyltransferase compare
ABZR87_RS15120 -1.0 -7.8 aminopeptidase N compare
ABZR87_RS10800 -1.0 -2.7 YbaB/EbfC family nucleoid-associated protein compare
ABZR87_RS04615 -1.0 -3.4 Rrf2 family transcriptional regulator compare
ABZR87_RS13315 -1.0 -5.5 RluA family pseudouridine synthase compare
ABZR87_RS06840 -1.0 -4.8 COX15/CtaA family protein compare
ABZR87_RS07020 -0.9 -5.8 dynamin-like GTPase family protein compare
ABZR87_RS07470 -0.9 -4.9 TetR/AcrR family transcriptional regulator compare
ABZR87_RS13175 -0.9 -0.9 tRNA-Leu compare
ABZR87_RS04245 -0.9 -7.3 OmpW family protein compare
ABZR87_RS15225 -0.9 -2.6 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase compare
ABZR87_RS08990 -0.9 -3.5 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS04945 -0.9 -1.8 DUF4390 domain-containing protein compare
ABZR87_RS05205 -0.9 -3.2 methionine biosynthesis protein MetW compare


Specific Phenotypes

For 11 genes in this experiment

For carbon source Protocatechuic Acid in Ralstonia sp. UNC404CL21Col

For carbon source Protocatechuic Acid across organisms