Experiment set8IT064 for Caulobacter crescentus NA1000

Compare to:

48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03913 +1.2 2.2 hypothetical protein compare
CCNA_01851 +1.0 8.5 quinol cytochrome oxidase polypeptide II compare
CCNA_01850 +1.0 7.9 quinol cytochrome oxidase polypeptide I compare
CCNA_01780 +0.9 7.4 exopolyphosphatase compare
CCNA_01979 +0.9 4.2 LexA repressor compare
CCNA_03948 +0.9 3.1 hypothetical protein compare
CCNA_02732 +0.9 6.1 hypothetical protein compare
CCNA_01712 +0.8 6.6 CopY/TcrY family transcriptional repressor compare
CCNA_01849 +0.8 5.2 quinol cytochrome oxidase polypeptide III compare
CCNA_01756 +0.8 1.5 hypothetical protein compare
CCNA_01848 +0.8 5.7 quinol cytochrome oxidase polypeptide IV compare
CCNA_01801 +0.8 3.8 hypothetical protein compare
CCNA_01012 +0.8 1.7 N-formimino-L-glutamate deiminase compare
CCNA_03965 +0.8 1.9 hypothetical protein compare
CCNA_01968 +0.8 1.9 pentapeptide repeats containing protein compare
CCNA_01913 +0.8 5.8 MarR-family transcriptional regulator compare
CCNA_01840 +0.8 5.9 MerR-family transcriptional regulator compare
CCNA_03612 +0.8 5.2 HTH XRE-family transcriptional regulator compare
CCNA_01393 +0.7 6.8 soluble lytic murein transglycosylase compare
CCNA_03944 +0.7 0.7 hypothetical protein compare
CCNA_02000 +0.7 1.0 SSU ribosomal protein S2P compare
CCNA_R0037 +0.7 3.7 tRNA-Glu compare
CCNA_01074 +0.7 3.3 entericidin B-like protein compare
CCNA_01573 +0.7 3.9 ArsR-family transcriptional regulator compare
CCNA_03964 +0.7 2.9 hypothetical protein compare
CCNA_02063 +0.7 3.1 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_03961 +0.7 2.5 hypothetical protein compare
CCNA_02103 +0.7 4.5 hypothetical protein compare
CCNA_02011 +0.7 3.8 methylmalonyl CoA epimerase compare
CCNA_01457 +0.7 1.6 hypothetical protein compare
CCNA_03951 +0.7 3.2 hypothetical protein compare
CCNA_01181 +0.7 4.8 hypothetical protein compare
CCNA_01949 +0.7 3.8 bactofilin A BacA compare
CCNA_01931 +0.6 4.3 TetR-family transcriptional regulator compare
CCNA_03918 +0.6 1.3 hypothetical protein compare
CCNA_01531 +0.6 4.7 acetyltransferase compare
CCNA_02703 +0.6 3.2 5-hydroxyisourate hydrolase compare
CCNA_01445 +0.6 3.2 hypothetical protein compare
CCNA_02324 +0.6 5.1 heat shock protein 33 hsp33 compare
CCNA_01059 +0.6 5.3 S-layer protein rsaA compare
CCNA_03954 +0.6 1.4 hypothetical protein compare
CCNA_01742 +0.6 3.0 hypothetical protein compare
CCNA_01680 +0.6 4.2 succinylarginine dihydrolase compare
CCNA_01677 +0.6 3.7 carboxypeptidase G2 precursor compare
CCNA_01413 +0.6 3.8 phosphoglycerate mutase family protein compare
CCNA_01928 +0.6 2.9 conserved ACT domain protein compare
CCNA_03963 +0.6 1.8 hypothetical protein compare
CCNA_02447 +0.6 5.0 PspA/IM30 family regulatory protein compare
CCNA_01415 +0.6 4.6 methyltransferase compare
CCNA_03064 +0.6 3.9 PadR-family transcriptional regulator compare
CCNA_01412 +0.6 4.3 acyl-CoA dehydrogenase, short-chain specific compare
CCNA_01679 +0.6 3.7 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01094 +0.6 2.7 hypothetical protein compare
CCNA_00769 +0.6 4.4 TetR family transcriptional regulator compare
CCNA_00807 +0.6 1.0 ribonuclease P protein component compare
CCNA_01526 +0.6 2.7 flagellar biosynthesis regulatory protein flaF compare
CCNA_01804 +0.6 3.4 glutathione peroxidase compare
CCNA_02243 +0.6 5.5 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01333 +0.6 2.3 hypothetical protein compare
CCNA_02761 +0.6 3.5 hypothetical protein compare
CCNA_01414 +0.6 4.2 3-hydroxyisobutyryl-CoA hydrolase compare
CCNA_02330 +0.6 2.8 hypothetical protein compare
CCNA_01006 +0.6 3.3 flagellar hook-basal body complex protein FliE compare
CCNA_01008 +0.6 4.9 urocanate hydratase compare
CCNA_01252 +0.6 5.3 soluble lytic murein transglycosylase compare
CCNA_02387 +0.6 4.6 glutathione reductase compare
CCNA_02805 +0.6 3.2 hypothetical protein compare
CCNA_01684 +0.6 3.4 phenylalanine-4-hydroxylase compare
CCNA_01790 +0.6 2.9 protein translocase subunit secG compare
CCNA_00684 +0.6 3.4 anti-sigma factor, ChrR-family compare
CCNA_01962 +0.6 3.5 leucyl/phenylalanyl-tRNA--protein transferase compare
CCNA_01458 +0.6 2.9 hypothetical protein compare
CCNA_02448 +0.5 4.6 hypothetical protein compare
CCNA_01009 +0.5 3.8 N-formylglutamate deformylase compare
CCNA_00535 +0.5 1.9 hypothetical protein compare
CCNA_03196 +0.5 2.7 hypothetical protein compare
CCNA_00998 +0.5 3.6 ROS/MUCR transcriptional regulator compare
CCNA_02453 +0.5 2.1 protein tyrosine phosphatase compare
CCNA_00035 +0.5 4.0 tRNA pseudouridine synthase B compare
CCNA_03614 +0.5 4.3 hypothetical protein compare
CCNA_03043 +0.5 1.8 type IV pilin protein pilA compare
CCNA_02273 +0.5 2.8 glutathione peroxidase compare
CCNA_01276 +0.5 1.8 cytochrome c5 compare
CCNA_02272 +0.5 2.8 hypothetical protein compare
CCNA_02338 +0.5 3.8 hypothetical protein compare
CCNA_03910 +0.5 1.0 hypothetical protein compare
CCNA_01528 +0.5 3.8 flagellin fljK compare
CCNA_03556 +0.5 3.8 multidrug efflux system protein compare
CCNA_02671 +0.5 1.7 hypothetical protein compare
CCNA_03940 +0.5 2.6 hypothetical protein compare
CCNA_02646 +0.5 1.1 cell division protein MraZ compare
CCNA_02132 +0.5 2.8 LacI-family transcriptional regulator compare
CCNA_01963 +0.5 2.8 hypothetical protein compare
CCNA_03618 +0.5 4.0 SCO1/SenC family protein compare
CCNA_02892 +0.5 1.5 hypothetical protein compare
CCNA_01480 +0.5 2.0 hypothetical protein compare
CCNA_01541 +0.5 3.6 LysR-family transcriptional regulator compare
CCNA_01361 +0.5 1.5 PepSY superfamily protein compare
CCNA_00780 +0.5 4.0 N-formylglutamate deformylase compare
CCNA_03123 +0.5 3.7 ArsR-family transcriptional regulator compare
CCNA_00047 +0.5 3.7 tRNA m7-G46 methyltransferase compare
CCNA_01681 +0.5 2.8 RimI-like acetyltransferase compare
CCNA_02249 +0.5 2.0 conserved hypothetical cytosolic protein compare
CCNA_03762 +0.5 2.5 acetolactate synthase-related protein compare
CCNA_03479 +0.5 3.7 MarR-family transcriptional regulator compare
CCNA_02363 +0.5 3.2 hypothetical protein compare
CCNA_03325 +0.5 2.6 hypothetical protein compare
CCNA_00699 +0.5 2.7 LSU ribosomal protein L28P compare
CCNA_02339 +0.5 4.2 methyltransferase compare
CCNA_01235 +0.5 3.5 AcrR-family transcriptional regulator compare
CCNA_01655 +0.5 3.3 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01847 +0.5 3.7 cytochrome c oxidase assembly protein Surf1 compare
CCNA_01778 +0.5 3.6 penicillin-binding protein compare
CCNA_03975 +0.5 2.3 hypothetical protein compare
CCNA_01748 +0.5 3.5 methyltransferase compare
CCNA_00992 +0.5 3.9 hypothetical protein compare
CCNA_03321 +0.5 3.5 VanZ superfamily protein compare
CCNA_01025 +0.5 3.2 hypothetical protein compare
CCNA_01406 +0.5 2.8 metal-dependent hydrolase compare
CCNA_01013 +0.5 2.9 histidine utilization repressor compare
CCNA_03379 +0.5 1.4 Cro/CI family transcriptional regulator compare
CCNA_03472 +0.5 3.5 hypothetical protein compare
CCNA_00429 +0.5 1.5 hypothetical protein compare
CCNA_00527 +0.5 3.3 hypothetical protein compare
CCNA_03280 +0.5 4.5 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_01993 +0.5 3.5 membrane endopeptidase MmpA compare
CCNA_02341 +0.5 2.5 small heat shock protein compare
CCNA_00895 +0.5 3.4 hypothetical protein compare
CCNA_03952 +0.5 3.0 hypothetical protein compare
CCNA_02664 +0.5 1.3 flagellar assembly regulator FliX compare
CCNA_00811 +0.5 2.9 TetR-family transcriptional regulator compare
CCNA_02698 +0.5 3.6 Inosine-uridine nucleoside N-ribohydrolase compare
CCNA_01752 +0.5 3.0 YicC-family protein compare
CCNA_00939 +0.5 2.5 MarR-family transcriptional regulator compare
CCNA_02042 +0.5 3.3 trigger factor chaperone compare
CCNA_01405 +0.5 3.3 GIY-YIG domain protein compare
CCNA_02992 +0.5 2.2 hypothetical protein compare
CCNA_01533 +0.5 3.1 hypothetical protein compare
CCNA_03252 +0.5 3.6 CopY/TcrY-family transcriptional regulator compare
CCNA_00518 +0.5 2.2 LSU ribosomal protein L25P compare
CCNA_01024 +0.5 3.8 hypothetical protein compare
CCNA_02467 +0.5 3.7 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_00326 +0.4 3.4 vegetatible incompatibility protein HET-E-1 compare
CCNA_01578 +0.4 3.1 beta-lactamase repressor compare
CCNA_00046 +0.4 2.5 hypothetical protein compare
CCNA_00162 +0.4 1.9 hypothetical protein compare
CCNA_02957 +0.4 1.9 ArsR-family transcriptional regulator compare
CCNA_03989 +0.4 3.7 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_00803 +0.4 2.3 chemotaxis protein cheW compare
CCNA_02601 +0.4 3.7 glutathione-dependent formaldehyde dehydrogenase compare
CCNA_03012 +0.4 2.8 peroxiredoxin compare
CCNA_00946 +0.4 2.8 Basal-body rod modification protein FlgD compare
CCNA_01773 +0.4 2.4 SNARE-associated family membrane protein compare
CCNA_02067 +0.4 2.4 conserved membrane spanning protein compare
CCNA_03615 +0.4 4.1 TonB dependent receptor compare
CCNA_01768 +0.4 2.0 hypothetical protein compare
CCNA_00038 +0.4 3.0 hypothetical protein compare
CCNA_03938 +0.4 2.0 hypothetical protein compare
CCNA_02040 +0.4 1.2 phosphoserine phosphatase compare
CCNA_01434 +0.4 2.2 MerR-family transcriptional regulator compare
CCNA_02334 +0.4 2.2 transcriptional regulator of stalk biogenesis staR compare
CCNA_00735 +0.4 1.5 beta-barrel assembly machine (BAM) protein BamF compare
CCNA_03010 +0.4 3.1 MAPEG family protein compare
CCNA_01420 +0.4 1.5 NrdR family transcriptional regulator compare
CCNA_03622 +0.4 3.0 beta-lactamase repressor compare
CCNA_00031 +0.4 2.6 toxin protein VapC compare
CCNA_01005 +0.4 3.0 flagellar basal-body rod protein flgC compare
CCNA_00039 +0.4 3.2 hypothetical protein compare
CCNA_03023 +0.4 3.8 TonB-dependent receptor compare
CCNA_01933 +0.4 1.7 hypothetical protein compare
CCNA_02617 +0.4 3.2 histidinol-phosphate aminotransferase compare
CCNA_01452 +0.4 2.2 hypothetical protein compare
CCNA_00947 +0.4 3.5 flagellar hook protein FlgE compare
CCNA_00676 +0.4 2.5 PSK-family transcription factor compare
CCNA_03936 +0.4 1.5 hypothetical protein compare
CCNA_01939 +0.4 1.7 ADP-ribosylglycohydrolase compare
CCNA_01926 +0.4 2.8 GGDEF diguanylate cyclase DgcB compare
CCNA_01699 +0.4 2.8 LacI-family transcriptional regulator compare
CCNA_00368 +0.4 2.9 phosphonates transport system permease protein phnE compare
CCNA_03700 +0.4 2.4 large-conductance mechanosensitive channel compare
CCNA_03391 +0.4 3.0 Cro/CI family transcriptional regulator compare
CCNA_02221 +0.4 3.4 methionine synthase I metH compare
CCNA_03050 +0.4 2.7 protein tyrosine phosphatase compare
CCNA_02551 +0.4 2.0 hypothetical protein compare
CCNA_00067 +0.4 3.0 YciI-like protein compare
CCNA_01007 +0.4 2.5 hypothetical protein compare
CCNA_01914 +0.4 3.3 16S rRNA m(2)G 1207 methyltransferase RsmC compare
CCNA_01004 +0.4 1.7 flagellar basal-body rod protein FlgB compare
CCNA_03616 +0.4 3.6 PiuB-related membrane protein compare
CCNA_03881 +0.4 1.6 beta-lactamse domain-containing protein compare
CCNA_03515 +0.4 2.8 hypothetical protein compare
CCNA_01951 +0.4 3.2 multimodular transpeptidase-transglycosylase PbpY compare
CCNA_01501 +0.4 1.7 protein kinase C-like superfamily protein compare
CCNA_00750 +0.4 3.3 FeaR-family transcriptional regulator compare
CCNA_01385 +0.4 2.6 rRNA methylase compare
CCNA_01827 +0.4 2.6 cobyric acid synthase CobQ compare
CCNA_02036 +0.4 1.9 DNA-binding protein HU compare
CCNA_00122 +0.4 1.9 hypothetical protein compare
CCNA_02560 +0.4 3.1 stalk cross-band protein StpC compare
CCNA_02367 +0.4 3.1 CelR-family transcriptional regulator compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Streptomycin sulfate salt across organisms