Experiment set8IT064 for Ralstonia sp. UNC404CL21Col

Compare to:

Dodecandioic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS13290 -6.9 -6.7 3-ketoacyl-ACP reductase compare
ABZR87_RS14800 -5.6 -8.5 DUF1178 family protein compare
ABZR87_RS14540 -5.5 -5.4 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS12585 -5.4 -8.2 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS14505 -5.3 -5.2 phosphoribosylanthranilate isomerase compare
ABZR87_RS00205 -5.3 -4.8 DUF934 domain-containing protein compare
ABZR87_RS00190 -5.0 -9.5 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS13250 -5.0 -3.4 phosphoserine phosphatase SerB compare
ABZR87_RS14500 -5.0 -13.1 tryptophan synthase subunit beta compare
ABZR87_RS00200 -4.9 -5.8 phosphoadenylyl-sulfate reductase compare
ABZR87_RS07360 -4.9 -13.8 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS14795 -4.9 -11.2 acyl-CoA dehydrogenase family protein compare
ABZR87_RS01810 -4.9 -3.3 glutamate 5-kinase compare
ABZR87_RS08630 -4.9 -9.2 dihydroorotase compare
ABZR87_RS11940 -4.9 -3.3 SsrA-binding protein SmpB compare
ABZR87_RS05200 -4.8 -18.4 homoserine O-acetyltransferase compare
ABZR87_RS09450 -4.8 -9.6 prephenate dehydratase compare
ABZR87_RS02570 -4.8 -22.1 glutamate synthase-related protein compare
ABZR87_RS20875 -4.8 -7.2 LysR family transcriptional regulator compare
ABZR87_RS14790 -4.7 -9.0 acyl-CoA dehydrogenase compare
ABZR87_RS15790 -4.7 -6.4 3-oxoadipyl-CoA thiolase compare
ABZR87_RS14530 -4.7 -9.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS01110 -4.7 -10.8 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS06955 -4.7 -13.4 pitrilysin family protein compare
ABZR87_RS16660 -4.7 -8.9 helix-turn-helix domain-containing protein compare
ABZR87_RS06770 -4.7 -8.3 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS02595 -4.6 -12.3 shikimate kinase compare
ABZR87_RS02160 -4.6 -6.3 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS11625 -4.6 -13.1 malate synthase A compare
ABZR87_RS17310 -4.6 -7.6 PadR family transcriptional regulator compare
ABZR87_RS09465 -4.6 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS00210 -4.6 -7.7 nitrite/sulfite reductase compare
ABZR87_RS02140 -4.6 -17.9 anthranilate synthase component I compare
ABZR87_RS14490 -4.5 -9.6 tryptophan synthase subunit alpha compare
ABZR87_RS20880 -4.5 -9.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS16170 -4.5 -6.1 argininosuccinate lyase compare
ABZR87_RS22970 -4.5 -14.8 cystathionine gamma-synthase family protein compare
ABZR87_RS02640 -4.5 -17.2 diaminopimelate decarboxylase compare
ABZR87_RS17650 -4.4 -9.4 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14535 -4.4 -6.7 3-isopropylmalate dehydratase small subunit compare
ABZR87_RS14950 -4.4 -5.1 acetolactate synthase small subunit compare
ABZR87_RS06950 -4.4 -15.0 pitrilysin family protein compare
ABZR87_RS13415 -4.3 -5.9 IclR family transcriptional regulator compare
ABZR87_RS01645 -4.2 -5.7 type II 3-dehydroquinate dehydratase compare
ABZR87_RS00355 -4.2 -12.3 quinolinate synthase NadA compare
ABZR87_RS00285 -4.2 -2.9 acetylornithine transaminase compare
ABZR87_RS13790 -4.2 -9.6 chorismate synthase compare
ABZR87_RS00835 -4.2 -4.1 argininosuccinate synthase compare
ABZR87_RS04785 -4.2 -12.5 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS02155 -4.2 -8.4 anthranilate phosphoribosyltransferase compare
ABZR87_RS09445 -4.2 -12.9 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS09635 -4.1 -2.8 ribosome small subunit-dependent GTPase A compare
ABZR87_RS00605 -4.0 -10.0 hypothetical protein compare
ABZR87_RS07380 -4.0 -11.0 FAD/FMN-binding oxidoreductase compare
ABZR87_RS11440 -4.0 -10.2 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS05170 -4.0 -2.8 acetylglutamate kinase compare
ABZR87_RS02145 -3.9 -2.7 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS14115 -3.9 -4.6 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS21795 -3.9 -9.9 NUDIX domain-containing protein compare
ABZR87_RS05305 -3.9 -13.1 TetR family transcriptional regulator compare
ABZR87_RS12575 -3.8 -6.2 acetyl-CoA C-acyltransferase compare
ABZR87_RS09615 -3.8 -2.5 50S ribosomal protein L19 compare
ABZR87_RS00185 -3.8 -3.7 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS16080 -3.8 -3.3 P-II family nitrogen regulator compare
ABZR87_RS00195 -3.8 -6.8 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS11195 -3.8 -13.4 pseudouridine synthase compare
ABZR87_RS00220 -3.8 -14.6 CysB family HTH-type transcriptional regulator compare
ABZR87_RS00345 -3.7 -18.3 L-aspartate oxidase compare
ABZR87_RS01615 -3.7 -1.7 RNB domain-containing ribonuclease compare
ABZR87_RS09710 -3.7 -3.5 tRNA-Arg compare
ABZR87_RS10565 -3.6 -2.5 cupin domain-containing protein compare
ABZR87_RS11015 -3.6 -11.0 amino-acid N-acetyltransferase compare
ABZR87_RS02020 -3.6 -15.9 long-chain fatty acid--CoA ligase compare
ABZR87_RS02590 -3.6 -11.4 3-dehydroquinate synthase compare
ABZR87_RS14380 -3.6 -9.1 glutamate racemase compare
ABZR87_RS05350 -3.6 -5.9 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS00435 -3.6 -9.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS04865 -3.5 -4.8 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS02565 -3.5 -7.4 glutamate synthase subunit beta compare
ABZR87_RS16270 -3.5 -2.8 cold-shock protein compare
ABZR87_RS11390 -3.5 -15.3 PhoH family protein compare
ABZR87_RS11815 -3.5 -13.2 [protein-PII] uridylyltransferase compare
ABZR87_RS09935 -3.4 -4.1 amino acid aminotransferase compare
ABZR87_RS14955 -3.4 -6.1 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS10820 -3.4 -9.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS12345 -3.4 -1.9 dethiobiotin synthase compare
ABZR87_RS04125 -3.4 -6.8 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS16125 -3.4 -7.0 heme biosynthesis protein HemY compare
ABZR87_RS05100 -3.3 -6.6 RNA polymerase-binding protein DksA compare
ABZR87_RS08625 -3.3 -3.1 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS06385 -3.2 -14.8 CHASE3 domain-containing protein compare
ABZR87_RS16180 -3.2 -5.7 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS01605 -3.2 -12.5 shikimate dehydrogenase compare
ABZR87_RS02545 -3.1 -11.4 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS15685 -3.1 -9.7 TIGR00730 family Rossman fold protein compare
ABZR87_RS02555 -3.1 -10.5 ABC transporter ATP-binding protein compare
ABZR87_RS13285 -3.1 -12.2 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS10870 -3.1 -9.6 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS13300 -3.1 -9.0 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS06400 -3.0 -11.9 response regulator transcription factor compare
ABZR87_RS20865 -3.0 -6.4 acyl-CoA dehydrogenase family protein compare
ABZR87_RS11245 -3.0 -7.1 translational GTPase TypA compare
ABZR87_RS20870 -3.0 -12.0 LysR family transcriptional regulator compare
ABZR87_RS00350 -3.0 -5.0 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS10610 -2.9 -2.7 inositol monophosphatase family protein compare
ABZR87_RS02440 -2.9 -10.0 twin-arginine translocase subunit TatC compare
ABZR87_RS02550 -2.8 -7.2 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS05000 -2.8 -16.3 LysR family transcriptional regulator compare
ABZR87_RS02375 -2.8 -15.0 cytochrome c1 compare
ABZR87_RS07635 -2.8 -1.9 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS00875 -2.8 -5.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS14655 -2.8 -10.8 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS02445 -2.8 -6.2 Sec-independent protein translocase protein TatB compare
ABZR87_RS02235 -2.8 -7.0 response regulator compare
ABZR87_RS02225 -2.8 -14.9 ATP-binding protein compare
ABZR87_RS12790 -2.7 -5.5 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS12785 -2.7 -1.8 endopeptidase La compare
ABZR87_RS04975 -2.6 -2.5 peptide deformylase compare
ABZR87_RS08660 -2.6 -9.0 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS02385 -2.6 -6.3 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS02380 -2.6 -13.0 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS02680 -2.6 -12.8 c-type cytochrome compare
ABZR87_RS02535 -2.5 -8.8 phospholipid-binding protein MlaC compare
ABZR87_RS07510 -2.5 -5.8 LysR family transcriptional regulator compare
ABZR87_RS21095 -2.5 -1.7 TRAP transporter small permease compare
ABZR87_RS11065 -2.5 -8.5 nitrogen regulation protein NR(II) compare
ABZR87_RS07625 -2.5 -4.1 Holliday junction branch migration protein RuvA compare
ABZR87_RS09625 -2.4 -8.9 CobD/CbiB family protein compare
ABZR87_RS10170 -2.4 -5.2 RseA family anti-sigma factor compare
ABZR87_RS11790 -2.4 -5.7 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS02540 -2.4 -10.1 VacJ family lipoprotein compare
ABZR87_RS18910 -2.4 -2.6 DUF2239 family protein compare
ABZR87_RS07620 -2.4 -5.9 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS06845 -2.3 -11.3 heme o synthase compare
ABZR87_RS02575 -2.3 -8.7 transposase compare
ABZR87_RS21815 -2.3 -1.5 MarR family winged helix-turn-helix transcriptional regulator compare
ABZR87_RS10175 -2.2 -6.5 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS21285 -2.2 -2.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS02150 -2.2 -2.9 lysozyme inhibitor LprI family protein compare
ABZR87_RS05130 -2.2 -1.5 CsbD family protein compare
ABZR87_RS16250 -2.2 -4.5 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS00215 -2.1 -4.3 sulfite exporter TauE/SafE family protein compare
ABZR87_RS05065 -2.1 -6.8 tyrosine recombinase XerC compare
ABZR87_RS08655 -2.1 -5.2 glucose-1-phosphate thymidylyltransferase RfbA compare
ABZR87_RS09085 -2.1 -9.8 DUF883 family protein compare
ABZR87_RS04945 -2.1 -3.5 DUF4390 domain-containing protein compare
ABZR87_RS14575 -2.0 -6.7 GntR family transcriptional regulator compare
ABZR87_RS09075 -2.0 -6.0 DUF3318 domain-containing protein compare
ABZR87_RS09460 -2.0 -6.7 prephenate dehydrogenase compare
ABZR87_RS01035 -2.0 -6.8 histidine utilization repressor compare
ABZR87_RS10785 -1.9 -6.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS16960 -1.9 -4.4 HAMP domain-containing sensor histidine kinase compare
ABZR87_RS00970 -1.9 -2.1 molecular chaperone DnaJ compare
ABZR87_RS01675 -1.9 -1.8 carbohydrate kinase family protein compare
ABZR87_RS12735 -1.9 -10.5 winged helix DNA-binding protein compare
ABZR87_RS00965 -1.9 -12.7 bifunctional anthranilate synthase component I family protein/class IV aminotransferase compare
ABZR87_RS04940 -1.9 -5.4 PAS domain-containing sensor histidine kinase compare
ABZR87_RS05590 -1.8 -2.1 orotate phosphoribosyltransferase compare
ABZR87_RS06265 -1.8 -7.2 biotin synthase BioB compare
ABZR87_RS10240 -1.8 -1.2 elongation factor P maturation arginine rhamnosyltransferase EarP compare
ABZR87_RS03705 -1.8 -2.2 DUF2892 domain-containing protein compare
ABZR87_RS03960 -1.8 -8.8 cation:proton antiporter compare
ABZR87_RS13315 -1.8 -8.7 RluA family pseudouridine synthase compare
ABZR87_RS16735 -1.8 -13.2 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS12795 -1.8 -4.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP compare
ABZR87_RS12340 -1.8 -10.7 8-amino-7-oxononanoate synthase compare
ABZR87_RS17315 -1.7 -5.8 MarR family transcriptional regulator compare
ABZR87_RS20665 -1.7 -5.3 IclR family transcriptional regulator compare
ABZR87_RS02480 -1.7 -3.0 imidazole glycerol phosphate synthase subunit HisH compare
ABZR87_RS06705 -1.7 -11.4 glutamate--cysteine ligase compare
ABZR87_RS09080 -1.7 -5.5 phage holin family protein compare
ABZR87_RS12335 -1.7 -9.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABZR87_RS06745 -1.7 -5.0 S41 family peptidase compare
ABZR87_RS15795 -1.7 -3.1 CoA transferase subunit B compare
ABZR87_RS13540 -1.7 -2.8 DUF1488 family protein compare
ABZR87_RS06820 -1.7 -10.1 cytochrome c oxidase subunit 3 compare
ABZR87_RS03955 -1.7 -10.9 YbdK family carboxylate-amine ligase compare
ABZR87_RS08645 -1.6 -1.0 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS07760 -1.6 -3.2 HlyC/CorC family transporter compare
ABZR87_RS10780 -1.6 -5.5 PD-(D/E)XK nuclease family protein compare
ABZR87_RS05510 -1.6 -3.7 glutathione S-transferase compare
ABZR87_RS02485 -1.6 -1.4 MarC family protein compare
ABZR87_RS01055 -1.6 -8.9 heat-inducible transcriptional repressor HrcA compare
ABZR87_RS13445 -1.6 -4.8 phasin family protein compare
ABZR87_RS00830 -1.6 -3.5 pyrimidine/purine nucleoside phosphorylase compare
ABZR87_RS06800 -1.6 -12.5 cytochrome c oxidase subunit I compare
ABZR87_RS11070 -1.6 -8.8 nitrogen regulation protein NR(I) compare
ABZR87_RS13770 -1.5 -7.7 CoA transferase subunit A compare
ABZR87_RS06810 -1.5 -6.8 cytochrome c oxidase assembly protein compare
ABZR87_RS04120 -1.5 -5.9 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
ABZR87_RS12800 -1.5 -4.9 trigger factor compare
ABZR87_RS06645 -1.5 -1.9 TlpA disulfide reductase family protein compare
ABZR87_RS03565 -1.4 -7.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS04880 -1.4 -7.5 5-formyltetrahydrofolate cyclo-ligase compare
ABZR87_RS10620 -1.4 -2.8 serine O-acetyltransferase compare
ABZR87_RS15800 -1.4 -4.1 3-oxoacid CoA-transferase subunit A compare
ABZR87_RS14510 -1.4 -4.9 tRNA pseudouridine(38-40) synthase TruA compare
ABZR87_RS16845 -1.4 -1.3 hypothetical protein compare
ABZR87_RS12580 -1.4 -3.7 bifunctional nicotinamidase/pyrazinamidase compare
ABZR87_RS00935 -1.4 -5.9 polynucleotide adenylyltransferase PcnB compare


Specific Phenotypes

For 5 genes in this experiment

For carbon source Dodecandioic acid in Ralstonia sp. UNC404CL21Col

For carbon source Dodecandioic acid across organisms