Experiment set8IT063 for Ralstonia sp. UNC404CL21Col

Compare to:

Sebacic acid carbon source

200 most important genes:

  gene name fitness t score description  
ABZR87_RS00205 -6.2 -2.7 DUF934 domain-containing protein compare
ABZR87_RS16080 -6.0 -2.3 P-II family nitrogen regulator compare
ABZR87_RS01640 -5.9 -2.9 TlpA disulfide reductase family protein compare
ABZR87_RS15000 -5.8 -11.1 TetR/AcrR family transcriptional regulator compare
ABZR87_RS14795 -5.8 -5.6 acyl-CoA dehydrogenase family protein compare
ABZR87_RS16660 -5.7 -3.6 helix-turn-helix domain-containing protein compare
ABZR87_RS00200 -5.7 -3.5 phosphoadenylyl-sulfate reductase compare
ABZR87_RS15790 -5.6 -3.4 3-oxoadipyl-CoA thiolase compare
ABZR87_RS14505 -5.6 -3.4 phosphoribosylanthranilate isomerase compare
ABZR87_RS12585 -5.3 -5.2 3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein compare
ABZR87_RS07360 -5.3 -10.2 threonine ammonia-lyase, biosynthetic compare
ABZR87_RS04785 -5.3 -9.5 phosphomethylpyrimidine synthase ThiC compare
ABZR87_RS14790 -5.2 -6.2 acyl-CoA dehydrogenase compare
ABZR87_RS14745 -5.2 -1.1 urease subunit gamma compare
ABZR87_RS02565 -5.2 -3.6 glutamate synthase subunit beta compare
ABZR87_RS01110 -5.2 -7.9 3-deoxy-7-phosphoheptulonate synthase AroG compare
ABZR87_RS08630 -5.2 -6.1 dihydroorotase compare
ABZR87_RS11390 -5.1 -8.5 PhoH family protein compare
ABZR87_RS02595 -5.1 -8.5 shikimate kinase compare
ABZR87_RS14500 -5.1 -9.1 tryptophan synthase subunit beta compare
ABZR87_RS05200 -5.1 -15.3 homoserine O-acetyltransferase compare
ABZR87_RS06770 -5.0 -4.9 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase compare
ABZR87_RS07760 -5.0 -2.4 HlyC/CorC family transporter compare
ABZR87_RS14530 -5.0 -6.0 3-isopropylmalate dehydrogenase compare
ABZR87_RS02680 -4.9 -12.3 c-type cytochrome compare
ABZR87_RS02640 -4.9 -16.6 diaminopimelate decarboxylase compare
ABZR87_RS00190 -4.9 -8.2 sulfate adenylyltransferase subunit 1 compare
ABZR87_RS02140 -4.9 -13.1 anthranilate synthase component I compare
ABZR87_RS04245 -4.9 -15.4 OmpW family protein compare
ABZR87_RS20875 -4.9 -4.8 LysR family transcriptional regulator compare
ABZR87_RS01645 -4.9 -4.1 type II 3-dehydroquinate dehydratase compare
ABZR87_RS09445 -4.8 -6.6 3-phosphoserine/phosphohydroxythreonine transaminase compare
ABZR87_RS02570 -4.8 -20.5 glutamate synthase-related protein compare
ABZR87_RS14540 -4.8 -6.9 3-isopropylmalate dehydratase large subunit compare
ABZR87_RS02155 -4.8 -7.9 anthranilate phosphoribosyltransferase compare
ABZR87_RS20880 -4.8 -6.5 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase compare
ABZR87_RS14380 -4.7 -7.8 glutamate racemase compare
ABZR87_RS16170 -4.7 -5.5 argininosuccinate lyase compare
ABZR87_RS05305 -4.7 -7.1 TetR family transcriptional regulator compare
ABZR87_RS21795 -4.6 -7.6 NUDIX domain-containing protein compare
ABZR87_RS14800 -4.6 -6.7 DUF1178 family protein compare
ABZR87_RS13250 -4.6 -1.9 phosphoserine phosphatase SerB compare
ABZR87_RS00210 -4.6 -5.5 nitrite/sulfite reductase compare
ABZR87_RS01810 -4.6 -2.4 glutamate 5-kinase compare
ABZR87_RS02020 -4.6 -12.5 long-chain fatty acid--CoA ligase compare
ABZR87_RS15255 -4.6 -8.1 ribonuclease PH compare
ABZR87_RS02385 -4.6 -4.4 ubiquinol-cytochrome c reductase iron-sulfur subunit compare
ABZR87_RS02160 -4.5 -6.0 indole-3-glycerol phosphate synthase TrpC compare
ABZR87_RS13790 -4.5 -4.4 chorismate synthase compare
ABZR87_RS17310 -4.5 -6.8 PadR family transcriptional regulator compare
ABZR87_RS14490 -4.5 -8.1 tryptophan synthase subunit alpha compare
ABZR87_RS14950 -4.5 -2.8 acetolactate synthase small subunit compare
ABZR87_RS02150 -4.5 -2.7 lysozyme inhibitor LprI family protein compare
ABZR87_RS13290 -4.5 -4.5 3-ketoacyl-ACP reductase compare
ABZR87_RS05100 -4.5 -3.1 RNA polymerase-binding protein DksA compare
ABZR87_RS11940 -4.4 -2.9 SsrA-binding protein SmpB compare
ABZR87_RS02445 -4.4 -3.0 Sec-independent protein translocase protein TatB compare
ABZR87_RS09465 -4.4 -5.2 3-phosphoshikimate 1-carboxyvinyltransferase compare
ABZR87_RS16270 -4.4 -1.3 cold-shock protein compare
ABZR87_RS00350 -4.4 -6.3 carboxylating nicotinate-nucleotide diphosphorylase compare
ABZR87_RS02380 -4.4 -16.1 cytochrome bc complex cytochrome b subunit compare
ABZR87_RS00355 -4.3 -13.2 quinolinate synthase NadA compare
ABZR87_RS07475 -4.3 -17.3 acyl-CoA dehydrogenase C-terminal domain-containing protein compare
ABZR87_RS17650 -4.3 -8.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS06845 -4.3 -8.2 heme o synthase compare
ABZR87_RS08660 -4.3 -2.9 dTDP-4-dehydrorhamnose 3,5-epimerase compare
ABZR87_RS15685 -4.2 -8.2 TIGR00730 family Rossman fold protein compare
ABZR87_RS11625 -4.2 -9.4 malate synthase A compare
ABZR87_RS22970 -4.2 -14.4 cystathionine gamma-synthase family protein compare
ABZR87_RS00345 -4.2 -16.7 L-aspartate oxidase compare
ABZR87_RS13285 -4.2 -13.7 polyhydroxyalkanoate synthesis repressor PhaR compare
ABZR87_RS20870 -4.1 -10.4 LysR family transcriptional regulator compare
ABZR87_RS01685 -4.1 -6.3 histone H1-like DNA-binding protein compare
ABZR87_RS16125 -4.1 -5.6 heme biosynthesis protein HemY compare
ABZR87_RS07380 -4.1 -6.3 FAD/FMN-binding oxidoreductase compare
ABZR87_RS16845 -4.1 -0.9 hypothetical protein compare
ABZR87_RS22910 -4.1 -1.8 6-phosphogluconolactonase compare
ABZR87_RS13415 -4.0 -4.8 IclR family transcriptional regulator compare
ABZR87_RS04295 -4.0 -5.1 HU family DNA-binding protein compare
ABZR87_RS00745 -4.0 -1.5 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS00285 -4.0 -2.4 acetylornithine transaminase compare
ABZR87_RS00835 -4.0 -3.9 argininosuccinate synthase compare
ABZR87_RS00230 -4.0 -1.2 NAD(P)-dependent oxidoreductase compare
ABZR87_RS00965 -3.9 -13.4 bifunctional anthranilate synthase component I family protein/class IV aminotransferase compare
ABZR87_RS00220 -3.9 -13.7 CysB family HTH-type transcriptional regulator compare
ABZR87_RS11440 -3.9 -9.0 pyridoxal phosphate-dependent aminotransferase compare
ABZR87_RS09710 -3.9 -2.4 tRNA-Arg compare
ABZR87_RS14115 -3.9 -3.0 ATP-dependent zinc metalloprotease FtsH compare
ABZR87_RS00605 -3.9 -9.9 hypothetical protein compare
ABZR87_RS00435 -3.9 -3.7 ATP-dependent Clp protease ATP-binding subunit ClpA compare
ABZR87_RS10820 -3.8 -7.1 LysR substrate-binding domain-containing protein compare
ABZR87_RS22340 -3.8 -1.2 hypothetical protein compare
ABZR87_RS04500 -3.8 -1.4 hypothetical protein compare
ABZR87_RS05145 -3.8 -1.2 copper chaperone PCu(A)C compare
ABZR87_RS00185 -3.8 -2.6 uroporphyrinogen-III C-methyltransferase compare
ABZR87_RS04865 -3.8 -2.6 methylenetetrahydrofolate reductase [NAD(P)H] compare
ABZR87_RS00195 -3.8 -4.5 sulfate adenylyltransferase subunit CysD compare
ABZR87_RS15405 -3.8 -2.7 YebC/PmpR family DNA-binding transcriptional regulator compare
ABZR87_RS11015 -3.7 -6.9 amino-acid N-acetyltransferase compare
ABZR87_RS05170 -3.7 -3.6 acetylglutamate kinase compare
ABZR87_RS02375 -3.7 -11.0 cytochrome c1 compare
ABZR87_RS23380 -3.7 -1.1 chemotaxis protein CheW compare
ABZR87_RS01615 -3.7 -1.0 RNB domain-containing ribonuclease compare
ABZR87_RS02590 -3.7 -10.7 3-dehydroquinate synthase compare
ABZR87_RS06950 -3.6 -9.7 pitrilysin family protein compare
ABZR87_RS00875 -3.6 -2.5 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
ABZR87_RS21470 -3.6 -1.5 P-II family nitrogen regulator compare
ABZR87_RS11990 -3.5 -1.7 hypothetical protein compare
ABZR87_RS06795 -3.5 -12.1 cytochrome c oxidase subunit II compare
ABZR87_RS09615 -3.5 -1.3 50S ribosomal protein L19 compare
ABZR87_RS11790 -3.5 -3.4 cell division protein ZipA C-terminal FtsZ-binding domain-containing protein compare
ABZR87_RS09450 -3.5 -5.6 prephenate dehydratase compare
ABZR87_RS11760 -3.5 -0.7 membrane protein compare
ABZR87_RS14955 -3.4 -3.4 acetolactate synthase 3 catalytic subunit compare
ABZR87_RS10120 -3.4 -1.3 YceD family protein compare
ABZR87_RS11815 -3.4 -13.5 [protein-PII] uridylyltransferase compare
ABZR87_RS12130 -3.4 -1.2 LysR substrate-binding domain-containing protein compare
ABZR87_RS16740 -3.4 -10.1 2-methylcitrate synthase compare
ABZR87_RS06955 -3.3 -10.6 pitrilysin family protein compare
ABZR87_RS05350 -3.3 -6.3 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE compare
ABZR87_RS08625 -3.3 -2.0 aspartate carbamoyltransferase catalytic subunit compare
ABZR87_RS18165 -3.3 -1.9 hypothetical protein compare
ABZR87_RS08680 -3.3 -4.5 glycosyltransferase compare
ABZR87_RS06385 -3.3 -8.2 CHASE3 domain-containing protein compare
ABZR87_RS06810 -3.3 -6.9 cytochrome c oxidase assembly protein compare
ABZR87_RS16180 -3.3 -3.9 arginine/lysine/ornithine decarboxylase compare
ABZR87_RS10870 -3.3 -8.5 peptidoglycan DD-metalloendopeptidase family protein compare
ABZR87_RS12345 -3.2 -1.0 dethiobiotin synthase compare
ABZR87_RS02440 -3.2 -8.7 twin-arginine translocase subunit TatC compare
ABZR87_RS10170 -3.2 -4.4 RseA family anti-sigma factor compare
ABZR87_RS04945 -3.2 -2.5 DUF4390 domain-containing protein compare
ABZR87_RS11925 -3.2 -12.9 phosphoenolpyruvate synthase compare
ABZR87_RS06265 -3.1 -6.7 biotin synthase BioB compare
ABZR87_RS01225 -3.1 -3.5 YggS family pyridoxal phosphate-dependent enzyme compare
ABZR87_RS06400 -3.1 -6.9 response regulator transcription factor compare
ABZR87_RS11245 -3.1 -7.0 translational GTPase TypA compare
ABZR87_RS09460 -3.1 -4.7 prephenate dehydrogenase compare
ABZR87_RS10565 -3.1 -3.0 cupin domain-containing protein compare
ABZR87_RS13300 -3.1 -6.2 class I poly(R)-hydroxyalkanoic acid synthase compare
ABZR87_RS06710 -3.0 -13.4 glutathione synthase compare
ABZR87_RS13315 -3.0 -7.5 RluA family pseudouridine synthase compare
ABZR87_RS09935 -3.0 -4.1 amino acid aminotransferase compare
ABZR87_RS02145 -3.0 -1.8 aminodeoxychorismate/anthranilate synthase component II compare
ABZR87_RS02235 -3.0 -5.4 response regulator compare
ABZR87_RS04125 -2.9 -7.5 tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG compare
ABZR87_RS00765 -2.9 -6.6 N-acetylmuramoyl-L-alanine amidase compare
ABZR87_RS09625 -2.9 -9.4 CobD/CbiB family protein compare
ABZR87_RS06705 -2.9 -15.0 glutamate--cysteine ligase compare
ABZR87_RS00215 -2.9 -5.2 sulfite exporter TauE/SafE family protein compare
ABZR87_RS02225 -2.9 -13.2 ATP-binding protein compare
ABZR87_RS01605 -2.9 -10.5 shikimate dehydrogenase compare
ABZR87_RS06800 -2.9 -11.5 cytochrome c oxidase subunit I compare
ABZR87_RS02100 -2.9 -4.5 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG compare
ABZR87_RS16735 -2.9 -16.0 Fe/S-dependent 2-methylisocitrate dehydratase AcnD compare
ABZR87_RS16255 -2.9 -5.9 OmpA family protein compare
ABZR87_RS06825 -2.8 -0.8 twin transmembrane helix small protein compare
ABZR87_RS21615 -2.8 -4.5 response regulator compare
ABZR87_RS00795 -2.8 -5.5 site-specific tyrosine recombinase XerD compare
ABZR87_RS21285 -2.8 -1.8 TetR/AcrR family transcriptional regulator compare
ABZR87_RS04975 -2.8 -1.6 peptide deformylase compare
ABZR87_RS23295 -2.8 -0.8 hypothetical protein compare
ABZR87_RS10785 -2.8 -7.9 exodeoxyribonuclease V subunit beta compare
ABZR87_RS02575 -2.8 -10.3 transposase compare
ABZR87_RS22330 -2.8 -3.5 hypothetical protein compare
ABZR87_RS12790 -2.7 -3.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
ABZR87_RS04995 -2.7 -1.7 DNA topoisomerase III compare
ABZR87_RS17760 -2.7 -1.1 ATP-binding cassette domain-containing protein compare
ABZR87_RS08665 -2.7 -7.3 GNAT family N-acetyltransferase compare
ABZR87_RS08540 -2.7 -1.7 TPM domain-containing protein compare
ABZR87_RS01690 -2.7 -0.6 collagen-like triple helix repeat-containing protein compare
ABZR87_RS16885 -2.7 -1.6 hypothetical protein compare
ABZR87_RS14655 -2.7 -7.1 3-hydroxyacyl-CoA dehydrogenase compare
ABZR87_RS01035 -2.6 -4.0 histidine utilization repressor compare
ABZR87_RS10030 -2.6 -1.3 SDR family oxidoreductase compare
ABZR87_RS10610 -2.6 -1.5 inositol monophosphatase family protein compare
ABZR87_RS11195 -2.6 -11.8 pseudouridine synthase compare
ABZR87_RS07290 -2.6 -2.6 DUF6691 family protein compare
ABZR87_RS15955 -2.6 -2.4 pyrroloquinoline quinone biosynthesis peptide chaperone PqqD compare
ABZR87_RS20865 -2.6 -3.8 acyl-CoA dehydrogenase family protein compare
ABZR87_RS07635 -2.6 -1.8 crossover junction endodeoxyribonuclease RuvC compare
ABZR87_RS12335 -2.6 -10.7 adenosylmethionine--8-amino-7-oxononanoate transaminase compare
ABZR87_RS13645 -2.5 -0.5 hypothetical protein compare
ABZR87_RS02180 -2.5 -11.7 M61 family metallopeptidase compare
ABZR87_RS06405 -2.5 -0.8 hypothetical protein compare
ABZR87_RS16250 -2.5 -2.9 iron-sulfur cluster carrier protein ApbC compare
ABZR87_RS04385 -2.5 -8.0 AAA-associated domain-containing protein compare
ABZR87_RS12340 -2.5 -9.8 8-amino-7-oxononanoate synthase compare
ABZR87_RS07620 -2.4 -4.5 Holliday junction branch migration DNA helicase RuvB compare
ABZR87_RS08670 -2.4 -10.4 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
ABZR87_RS15440 -2.4 -1.7 ribonuclease G compare
ABZR87_RS00935 -2.4 -5.1 polynucleotide adenylyltransferase PcnB compare
ABZR87_RS06820 -2.4 -5.8 cytochrome c oxidase subunit 3 compare
ABZR87_RS10175 -2.4 -5.5 MucB/RseB C-terminal domain-containing protein compare
ABZR87_RS02485 -2.4 -0.9 MarC family protein compare
ABZR87_RS13050 -2.4 -0.8 GpE family phage tail protein compare
ABZR87_RS19660 -2.3 -6.4 aspartate aminotransferase family protein compare
ABZR87_RS06840 -2.3 -5.1 COX15/CtaA family protein compare
ABZR87_RS09200 -2.3 -14.9 long-chain fatty acid--CoA ligase compare
ABZR87_RS10400 -2.3 -3.9 hypothetical protein compare
ABZR87_RS14535 -2.3 -2.9 3-isopropylmalate dehydratase small subunit compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Sebacic acid in Ralstonia sp. UNC404CL21Col

For carbon source Sebacic acid across organisms