Experiment set8IT063 for Ralstonia sp. UNC404CL21Col

Compare to:

Sebacic acid carbon source

200 most detrimental genes:

  gene name fitness t score description  
ABZR87_RS07470 +9.6 53.7 TetR/AcrR family transcriptional regulator compare
ABZR87_RS01285 +8.0 12.2 preprotein translocase subunit YajC compare
ABZR87_RS15320 +4.9 7.9 DUF969 domain-containing protein compare
ABZR87_RS05315 +4.8 41.9 efflux RND transporter permease subunit compare
ABZR87_RS13350 +4.6 17.6 potassium transporter Kup compare
ABZR87_RS05310 +4.5 36.0 efflux RND transporter periplasmic adaptor subunit compare
ABZR87_RS15335 +4.4 23.4 5-oxoprolinase subunit PxpB compare
ABZR87_RS11230 +4.4 25.7 HlyD family secretion protein compare
ABZR87_RS05320 +4.4 30.7 efflux transporter outer membrane subunit compare
ABZR87_RS15315 +4.3 18.9 DUF979 domain-containing protein compare
ABZR87_RS15330 +4.1 28.5 biotin-dependent carboxyltransferase family protein compare
ABZR87_RS11235 +3.9 19.0 AdeC/AdeK/OprM family multidrug efflux complex outer membrane factor compare
ABZR87_RS15325 +3.9 17.6 5-oxoprolinase subunit PxpA compare
ABZR87_RS11240 +3.6 7.0 MarR family transcriptional regulator compare
ABZR87_RS05570 +3.4 14.8 lysophospholipid acyltransferase family protein compare
ABZR87_RS10085 +3.1 3.3 Rne/Rng family ribonuclease compare
ABZR87_RS02535 +2.9 12.7 phospholipid-binding protein MlaC compare
ABZR87_RS22700 +2.8 17.9 APC family permease compare
ABZR87_RS02550 +2.8 9.3 lipid asymmetry maintenance ABC transporter permease subunit MlaE compare
ABZR87_RS01565 +2.8 15.6 NADP-dependent malic enzyme compare
ABZR87_RS02555 +2.8 13.5 ABC transporter ATP-binding protein compare
ABZR87_RS07735 +2.8 7.6 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase compare
ABZR87_RS02545 +2.7 16.5 outer membrane lipid asymmetry maintenance protein MlaD compare
ABZR87_RS09960 +2.6 5.8 ABC transporter permease compare
ABZR87_RS08645 +2.6 1.6 dTDP-glucose 4,6-dehydratase compare
ABZR87_RS19050 +2.5 8.7 glycosyltransferase family 39 protein compare
ABZR87_RS10955 +2.4 11.7 protease modulator HflC compare
ABZR87_RS01910 +2.4 2.3 peroxiredoxin compare
ABZR87_RS03940 +2.3 13.9 L-serine ammonia-lyase compare
ABZR87_RS12280 +2.2 19.0 MFS transporter compare
ABZR87_RS13120 +2.2 6.3 helix-turn-helix transcriptional regulator compare
ABZR87_RS06250 +2.2 4.9 hydroxymethylglutaryl-CoA lyase compare
ABZR87_RS19010 +2.1 5.0 acyloxyacyl hydrolase compare
ABZR87_RS14965 +2.1 5.4 DUF3619 family protein compare
ABZR87_RS08750 +2.1 6.9 lipopolysaccharide heptosyltransferase I compare
ABZR87_RS07005 +2.1 3.8 lipoprotein insertase outer membrane protein LolB compare
ABZR87_RS02540 +2.1 9.8 VacJ family lipoprotein compare
ABZR87_RS18630 +2.0 3.0 class II fumarate hydratase compare
ABZR87_RS09505 +2.0 9.7 ADP-glyceromanno-heptose 6-epimerase compare
ABZR87_RS09500 +2.0 7.2 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
ABZR87_RS14970 +2.0 4.5 DUF3106 domain-containing protein compare
ABZR87_RS09965 +1.9 4.3 sugar ABC transporter ATP-binding protein compare
ABZR87_RS15190 +1.9 10.3 PHB depolymerase family esterase compare
ABZR87_RS00865 +1.8 1.8 VTT domain-containing protein compare
ABZR87_RS00360 +1.8 2.3 acyl-CoA desaturase compare
ABZR87_RS03075 +1.8 9.9 AGE family epimerase/isomerase compare
ABZR87_RS11420 +1.7 1.9 DegT/DnrJ/EryC1/StrS aminotransferase family protein compare
ABZR87_RS15590 +1.7 8.9 DUF2957 domain-containing protein compare
ABZR87_RS16545 +1.6 1.8 enoyl-CoA hydratase family protein compare
ABZR87_RS08635 +1.6 8.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS07730 +1.6 3.4 lysophospholipid acyltransferase family protein compare
ABZR87_RS17440 +1.6 1.3 (2Fe-2S)-binding protein compare
ABZR87_RS05280 +1.5 12.0 phosphoenolpyruvate carboxykinase (GTP) compare
ABZR87_RS07115 +1.5 6.6 Na/Pi cotransporter family protein compare
ABZR87_RS13310 +1.5 7.0 peptidoglycan editing factor PgeF compare
ABZR87_RS17825 +1.4 3.8 F390 synthetase-related protein compare
ABZR87_RS05645 +1.4 4.8 SDR family oxidoreductase compare
ABZR87_RS05140 +1.4 1.4 ATP-binding protein compare
ABZR87_RS02025 +1.4 7.6 aminopeptidase compare
ABZR87_RS14625 +1.4 1.6 hypothetical protein compare
ABZR87_RS15485 +1.4 3.5 glycosyltransferase family 2 protein compare
ABZR87_RS10700 +1.3 6.5 C40 family peptidase compare
ABZR87_RS14680 +1.3 1.6 SDR family oxidoreductase compare
ABZR87_RS07645 +1.3 2.9 Fis family transcriptional regulator compare
ABZR87_RS05015 +1.3 6.9 penicillin-binding protein 2 compare
ABZR87_RS10695 +1.3 6.3 ABC transporter ATP-binding protein compare
ABZR87_RS16055 +1.3 5.5 outer membrane lipoprotein chaperone LolA compare
ABZR87_RS08990 +1.3 3.5 peptidoglycan-associated lipoprotein Pal compare
ABZR87_RS01800 +1.3 6.0 RNA pyrophosphohydrolase compare
ABZR87_RS05025 +1.3 3.1 rod shape-determining protein MreC compare
ABZR87_RS07390 +1.2 8.2 ABC transporter ATP-binding protein/permease compare
ABZR87_RS13335 +1.2 1.6 hypothetical protein compare
ABZR87_RS18560 +1.2 2.4 NmrA family NAD(P)-binding protein compare
ABZR87_RS10950 +1.2 6.5 FtsH protease activity modulator HflK compare
ABZR87_RS00085 +1.2 2.5 ABC transporter ATP-binding protein compare
ABZR87_RS02275 +1.2 4.2 hypothetical protein compare
ABZR87_RS14010 +1.2 1.5 avidin/streptavidin family protein compare
ABZR87_RS09800 +1.2 3.8 alpha/beta fold hydrolase compare
ABZR87_RS19630 +1.2 2.8 oxidoreductase compare
ABZR87_RS20250 +1.1 1.6 type VI secretion system lipoprotein TssJ compare
ABZR87_RS07215 +1.1 1.3 hotdog family protein compare
ABZR87_RS05000 +1.1 8.1 LysR family transcriptional regulator compare
ABZR87_RS14890 +1.1 0.8 preprotein translocase subunit SecG compare
ABZR87_RS01325 +1.1 4.1 FMN-binding glutamate synthase family protein compare
ABZR87_RS08985 +1.1 6.0 Tol-Pal system beta propeller repeat protein TolB compare
ABZR87_RS21150 +1.1 2.4 branched-chain amino acid ABC transporter permease compare
ABZR87_RS09105 +1.1 6.7 IclR family transcriptional regulator compare
ABZR87_RS15490 +1.1 5.1 glycosyltransferase family 2 protein compare
ABZR87_RS09810 +1.1 1.7 glutathione S-transferase compare
ABZR87_RS19350 +1.1 3.0 putative hydro-lyase compare
ABZR87_RS15550 +1.1 7.5 TetR/AcrR family transcriptional regulator compare
ABZR87_RS05990 +1.1 1.6 AraC family transcriptional regulator compare
ABZR87_RS00625 +1.1 1.3 hypothetical protein compare
ABZR87_RS10690 +1.1 4.9 ABC transporter permease compare
ABZR87_RS09585 +1.1 2.4 hypothetical protein compare
ABZR87_RS05965 +1.1 1.6 hemerythrin domain-containing protein compare
ABZR87_RS02525 +1.0 1.6 ABC transporter ATP-binding protein compare
ABZR87_RS10900 +1.0 4.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN compare
ABZR87_RS01070 +1.0 2.8 hypothetical protein compare
ABZR87_RS08490 +1.0 2.8 type II secretion system F family protein compare
ABZR87_RS12615 +1.0 1.9 branched-chain amino acid ABC transporter permease compare
ABZR87_RS20370 +1.0 1.0 ABC transporter ATP-binding protein compare
ABZR87_RS17865 +1.0 1.2 cation:proton antiporter compare
ABZR87_RS14910 +1.0 1.7 polyribonucleotide nucleotidyltransferase compare
ABZR87_RS09915 +1.0 1.5 endonuclease III compare
ABZR87_RS01340 +1.0 3.8 Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha compare
ABZR87_RS19440 +1.0 3.6 2OG-Fe(II) oxygenase compare
ABZR87_RS06455 +1.0 1.5 IclR family transcriptional regulator compare
ABZR87_RS19310 +1.0 1.7 type III secretion system stator protein SctL compare
ABZR87_RS17740 +1.0 3.2 ABC transporter ATP-binding protein compare
ABZR87_RS05010 +1.0 4.0 rod shape-determining protein RodA compare
ABZR87_RS13130 +1.0 2.8 ogr/Delta-like zinc finger family protein compare
ABZR87_RS02290 +1.0 5.1 glucans biosynthesis glucosyltransferase MdoH compare
ABZR87_RS10680 +1.0 6.8 extracellular solute-binding protein compare
ABZR87_RS15715 +1.0 4.1 UTP--glucose-1-phosphate uridylyltransferase GalU compare
ABZR87_RS17675 +1.0 3.6 RidA family protein compare
ABZR87_RS22160 +1.0 2.8 flagellar protein FliT compare
ABZR87_RS06755 +1.0 2.8 rhodanese-like domain-containing protein compare
ABZR87_RS21575 +1.0 2.2 amidohydrolase compare
ABZR87_RS22520 +1.0 1.8 ABATE domain-containing protein compare
ABZR87_RS20440 +1.0 0.7 F0F1 ATP synthase subunit epsilon compare
ABZR87_RS18075 +1.0 1.9 type III secretion system export apparatus subunit SctT compare
ABZR87_RS04420 +0.9 1.9 hypothetical protein compare
ABZR87_RS00910 +0.9 1.3 hypothetical protein compare
ABZR87_RS18620 +0.9 1.9 adenosylmethionine decarboxylase compare
ABZR87_RS18705 +0.9 2.6 TraB/GumN family protein compare
ABZR87_RS11980 +0.9 0.7 cold-shock protein compare
ABZR87_RS12775 +0.9 2.3 tRNA-Val compare
ABZR87_RS18290 +0.9 2.4 glycine zipper 2TM domain-containing protein compare
ABZR87_RS22875 +0.9 1.2 chorismate mutase compare
ABZR87_RS22645 +0.9 0.9 hypothetical protein compare
ABZR87_RS10165 +0.9 4.5 RNA polymerase sigma factor RpoE compare
ABZR87_RS05365 +0.9 3.4 membrane protein insertion efficiency factor YidD compare
ABZR87_RS00575 +0.9 3.7 HipA N-terminal domain-containing protein compare
ABZR87_RS10685 +0.9 4.7 microcin C ABC transporter permease YejB compare
ABZR87_RS12600 +0.9 2.3 ABC transporter ATP-binding protein compare
ABZR87_RS16860 +0.9 1.4 response regulator compare
ABZR87_RS07445 +0.9 2.1 hypothetical protein compare
ABZR87_RS11715 +0.9 1.3 glutathione ABC transporter permease GsiC compare
ABZR87_RS02190 +0.9 2.4 DsbC family protein compare
ABZR87_RS11000 +0.9 3.8 transaldolase compare
ABZR87_RS17845 +0.9 1.7 Crp/Fnr family transcriptional regulator compare
ABZR87_RS13390 +0.9 2.0 hypothetical protein compare
ABZR87_RS11860 +0.9 2.9 RIP metalloprotease RseP compare
ABZR87_RS03755 +0.8 1.9 TlpA disulfide reductase family protein compare
ABZR87_RS19970 +0.8 1.2 hypothetical protein compare
ABZR87_RS00820 +0.8 1.1 YajQ family cyclic di-GMP-binding protein compare
ABZR87_RS16795 +0.8 1.1 VOC family protein compare
ABZR87_RS08320 +0.8 1.8 hypothetical protein compare
ABZR87_RS18100 +0.8 2.0 type III secretion system inner membrane ring lipoprotein SctJ compare
ABZR87_RS17235 +0.8 2.4 alkyl hydroperoxide reductase subunit C compare
ABZR87_RS08190 +0.8 2.0 MarR family transcriptional regulator compare
ABZR87_RS06395 +0.8 2.8 response regulator compare
ABZR87_RS18715 +0.8 2.9 DUF2946 domain-containing protein compare
ABZR87_RS07700 +0.8 1.6 peptidylprolyl isomerase compare
ABZR87_RS04395 +0.8 4.5 TonB-dependent receptor compare
ABZR87_RS11170 +0.8 0.3 FixH family protein compare
ABZR87_RS06125 +0.8 2.0 3-hydroxybutyryl-CoA dehydrogenase compare
ABZR87_RS20645 +0.8 2.8 aldehyde dehydrogenase compare
ABZR87_RS20240 +0.8 2.2 type VI secretion system contractile sheath small subunit compare
ABZR87_RS10200 +0.8 2.6 DUF4845 domain-containing protein compare
ABZR87_RS22170 +0.8 3.5 flagellar filament capping protein FliD compare
ABZR87_RS20090 +0.8 1.5 universal stress protein compare
ABZR87_RS22390 +0.8 2.4 alpha/beta fold hydrolase compare
ABZR87_RS23515 +0.8 3.4 sigma-54 dependent transcriptional regulator compare
ABZR87_RS22960 +0.8 1.6 heme-copper oxidase subunit III family protein compare
ABZR87_RS13245 +0.8 2.2 acetylornithine deacetylase compare
ABZR87_RS19470 +0.8 4.6 UDP-glucose 4-epimerase GalE compare
ABZR87_RS10925 +0.8 1.9 tetratricopeptide repeat protein compare
ABZR87_RS03140 +0.8 1.8 PepSY-associated TM helix domain-containing protein compare
ABZR87_RS14050 +0.8 1.3 phosphohistidine phosphatase SixA compare
ABZR87_RS08970 +0.8 2.6 protein TolQ compare
ABZR87_RS21760 +0.8 1.8 methionine ABC transporter permease compare
ABZR87_RS21170 +0.8 1.3 ABC transporter ATP-binding protein compare
ABZR87_RS07110 +0.8 2.5 LysE family translocator compare
ABZR87_RS20140 +0.8 1.1 PAAR domain-containing protein compare
ABZR87_RS18250 +0.8 1.4 IclR family transcriptional regulator compare
ABZR87_RS15605 +0.8 0.6 hypothetical protein compare
ABZR87_RS10630 +0.8 2.5 peptidylprolyl isomerase compare
ABZR87_RS19665 +0.8 3.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
ABZR87_RS15575 +0.8 1.0 hypothetical protein compare
ABZR87_RS20245 +0.8 1.3 hypothetical protein compare
ABZR87_RS17330 +0.8 2.3 NAD(P)H-dependent oxidoreductase compare
ABZR87_RS22620 +0.8 1.4 UdgX family uracil-DNA binding protein compare
ABZR87_RS12065 +0.8 1.2 L-rhamnose mutarotase compare
ABZR87_RS17470 +0.8 1.9 CoA-acylating methylmalonate-semialdehyde dehydrogenase compare
ABZR87_RS20680 +0.8 1.3 SDR family oxidoreductase compare
ABZR87_RS08980 +0.8 1.7 cell envelope integrity protein TolA compare
ABZR87_RS16620 +0.8 1.1 hypothetical protein compare
ABZR87_RS14160 +0.8 4.8 transglycosylase SLT domain-containing protein compare
ABZR87_RS11180 +0.8 2.3 fumarate/nitrate reduction transcriptional regulator Fnr compare
ABZR87_RS10600 +0.8 1.7 MOSC domain-containing protein compare
ABZR87_RS12610 +0.7 3.2 branched-chain amino acid ABC transporter permease compare
ABZR87_RS08465 +0.7 1.0 GtrA family protein compare
ABZR87_RS01120 +0.7 2.1 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
ABZR87_RS03770 +0.7 1.9 DsrE family protein compare
ABZR87_RS01375 +0.7 2.1 two-component system hybrid sensor histidine kinase/response regulator PhcR compare
ABZR87_RS13925 +0.7 2.6 type VI secretion system contractile sheath small subunit compare
ABZR87_RS12750 +0.7 1.2 ABC transporter ATP-binding protein compare
ABZR87_RS08640 +0.7 2.4 symmetrical bis(5'-nucleosyl)-tetraphosphatase compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Sebacic acid in Ralstonia sp. UNC404CL21Col

For carbon source Sebacic acid across organisms