Experiment set8IT063 for Bacteroides thetaiotaomicron VPI-5482
BHIS with Ciprofloxacin Hydrochloride 0.025 mM
Group: stressMedia: BHIS + Ciprofloxacin Hydrochloride (0.025 mM) + Dimethyl Sulfoxide (0.25 vol%)
Culturing: Btheta_ML6a, 96 deep-well microplate; 1.2 mL volume, Anaerobic, at 37 (C), shaken=0 rpm
By: Hans on 6/18/18
Media components: 7.7 g/L Calf brains, 9.8 g/L Beef heart, 10 g/L Proteose Peptone, 5 g/L Sodium Chloride, 2.5 g/L Disodium phosphate, 1 g/L L-Cysteine, 2 g/L Sodium bicarbonate, 0.005 g/L Hemin
Specific Phenotypes
For 4 genes in this experiment
For stress Ciprofloxacin Hydrochloride in Bacteroides thetaiotaomicron VPI-5482
For stress Ciprofloxacin Hydrochloride across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA repair, bacterial | 1 |
| Pyruvate metabolism II: acetyl-CoA, acetogenesis from pyruvate | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| pyruvate fermentation to butanoate | 7 | 3 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic fermentation | 9 | 5 | 1 |
| L-glutamate degradation VII (to butanoate) | 12 | 4 | 1 |
| superpathway of Clostridium acetobutylicum acidogenic and solventogenic fermentation | 17 | 6 | 1 |