Experiment set8IT061 for Klebsiella michiganensis M5al

Compare to:

LB with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x

200 most important genes:

  gene name fitness t score description  
BWI76_RS13920 -6.7 -6.5 magnesium-translocating P-type ATPase compare
BWI76_RS06780 -4.7 -6.9 MexE family multidrug efflux RND transporter periplasmic adaptor subunit compare
BWI76_RS19840 -4.7 -2.0 hypothetical protein compare
BWI76_RS19845 -4.6 -8.8 phosphatase compare
BWI76_RS24400 -4.4 -7.9 outer membrane channel protein TolC compare
BWI76_RS01125 -4.3 -5.9 4-alpha-L-fucosyltransferase compare
BWI76_RS01135 -4.2 -6.8 lipopolysaccharide N-acetylmannosaminouronosyltransferase compare
BWI76_RS01800 -4.2 -4.9 glucose-6-phosphate isomerase compare
BWI76_RS18135 -4.1 -4.8 zinc ABC transporter ATP-binding protein ZnuC compare
BWI76_RS18140 -4.1 -5.2 zinc ABC transporter permease compare
BWI76_RS09645 -4.1 -2.5 thioredoxin-disulfide reductase compare
BWI76_RS26570 -4.1 -4.0 anion permease compare
BWI76_RS25225 -4.0 -7.0 ABC transporter permease compare
BWI76_RS01115 -4.0 -3.3 dTDP-4-amino-4,6-dideoxygalactose transaminase compare
BWI76_RS01325 -4.0 -2.5 twin-arginine translocase subunit TatB compare
BWI76_RS18130 -3.9 -4.2 zinc ABC transporter substrate-binding protein compare
BWI76_RS20475 -3.8 -5.3 phospholipid-binding lipoprotein MlaA compare
BWI76_RS25220 -3.8 -4.5 outer membrane lipid asymmetry maintenance protein MlaD compare
BWI76_RS09635 -3.8 -2.6 amino acid ABC transporter ATP-binding protein compare
BWI76_RS01080 -3.8 -8.7 undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase compare
BWI76_RS25070 -3.7 -2.3 hypothetical protein compare
BWI76_RS01095 -3.6 -2.6 UDP-N-acetyl-D-mannosamine dehydrogenase compare
BWI76_RS00180 -3.5 -2.1 F0F1 ATP synthase subunit epsilon compare
BWI76_RS01090 -3.5 -6.6 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) compare
BWI76_RS01330 -3.4 -4.5 twin-arginine translocase subunit TatC compare
BWI76_RS01110 -3.4 -6.5 TDP-fucosamine acetyltransferase compare
BWI76_RS02530 -3.4 -3.3 tRNA dimethylallyltransferase compare
BWI76_RS19905 -3.3 -5.3 OmpK36 porin compare
BWI76_RS22625 -3.3 -2.5 transcriptional regulator compare
BWI76_RS02815 -3.3 -3.2 fructose-bisphosphatase class I compare
BWI76_RS15115 -3.3 -4.5 MFS transporter compare
BWI76_RS21070 -3.2 -2.5 outer membrane protein assembly factor BamB compare
BWI76_RS25230 -3.2 -6.6 phospholipid ABC transporter ATP-binding protein MlaF compare
BWI76_RS05015 -3.1 -3.0 transcriptional regulator compare
BWI76_RS25060 -3.1 -4.5 lipoprotein NlpI compare
BWI76_RS25215 -3.0 -3.7 phospholipid-binding protein MlaC compare
BWI76_RS26665 -3.0 -3.8 DNA-binding response regulator compare
BWI76_RS08605 -3.0 -2.5 phosphoglyceromutase compare
BWI76_RS13915 -2.9 -8.1 magnesium transport protein MgtC compare
BWI76_RS01185 -2.9 -2.0 adenylate cyclase compare
BWI76_RS26670 -2.9 -7.7 two-component sensor histidine kinase compare
BWI76_RS25065 -2.9 -4.4 polyribonucleotide nucleotidyltransferase compare
BWI76_RS20155 -2.9 -2.8 NADH-quinone oxidoreductase subunit I compare
BWI76_RS27430 -2.9 -1.7 (p)ppGpp synthetase compare
BWI76_RS26620 -2.8 -1.7 Fe-S biogenesis protein NfuA compare
BWI76_RS09640 -2.7 -3.1 cysteine/glutathione ABC transporter permease/ATP-binding protein CydD compare
BWI76_RS04100 -2.7 -4.9 peptide chain release factor 3 compare
BWI76_RS01350 -2.7 -1.7 NAD(P)H-flavin reductase compare
BWI76_RS06525 -2.7 -5.2 ATP-dependent Clp protease proteolytic subunit compare
BWI76_RS23265 -2.7 -4.2 hypothetical protein compare
BWI76_RS20650 -2.6 -1.8 phosphoenolpyruvate--protein phosphotransferase compare
BWI76_RS20140 -2.6 -3.7 NADH-quinone oxidoreductase subunit L compare
BWI76_RS00345 -2.6 -3.8 protein disulfide oxidoreductase DsbA compare
BWI76_RS06775 -2.6 -9.9 multidrug efflux RND transporter permease subunit compare
BWI76_RS07475 -2.6 -1.6 DNA-binding transcriptional regulator RamA compare
BWI76_RS01995 -2.6 -1.9 AraC family transcriptional regulator compare
BWI76_RS17975 -2.6 -4.9 tail-specific protease compare
BWI76_RS23885 -2.5 -2.1 2-octaprenylphenol hydroxylase compare
BWI76_RS04705 -2.5 -6.0 DNA-binding transcriptional regulator FruR compare
BWI76_RS08500 -2.4 -4.4 cytochrome d ubiquinol oxidase subunit 2 compare
BWI76_RS25920 -2.4 -1.9 peptidylprolyl isomerase compare
BWI76_RS00875 -2.4 -4.4 DNA-binding transcriptional regulator FabR compare
BWI76_RS15225 -2.3 -1.6 DeoR family transcriptional regulator compare
BWI76_RS04715 -2.3 -2.0 division/cell wall cluster transcriptional repressor MraZ compare
BWI76_RS23230 -2.3 -1.6 exodeoxyribonuclease V subunit beta compare
BWI76_RS01210 -2.3 -1.8 tyrosine recombinase XerC compare
BWI76_RS09660 -2.3 -1.5 DNA translocase FtsK compare
BWI76_RS20180 -2.2 -4.2 NADH-quinone oxidoreductase subunit C/D compare
BWI76_RS26460 -2.2 -6.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE compare
BWI76_RS23240 -2.2 -2.6 exonuclease V subunit gamma compare
BWI76_RS08495 -2.2 -5.7 cytochrome bd-I ubiquinol oxidase subunit I compare
BWI76_RS17190 -2.2 -2.4 TonB system transport protein TonB compare
BWI76_RS27290 -2.1 -7.7 hypothetical protein compare
BWI76_RS20135 -2.1 -2.7 NADH-quinone oxidoreductase subunit M compare
BWI76_RS06015 -2.1 -1.7 hypothetical protein compare
BWI76_RS06530 -2.1 -7.0 ATP-dependent Clp protease ATP-binding subunit ClpX compare
BWI76_RS24280 -2.1 -3.8 biopolymer transporter ExbB compare
BWI76_RS20150 -2.1 -2.0 NADH:ubiquinone oxidoreductase subunit J compare
BWI76_RS04530 -2.0 -2.4 peptidylprolyl isomerase SurA compare
BWI76_RS24850 -2.0 -7.1 DeoR family transcriptional regulator compare
BWI76_RS27310 -1.9 -6.9 glycosyltransferase compare
BWI76_RS17720 -1.9 -1.1 muramoyltetrapeptide carboxypeptidase compare
BWI76_RS09190 -1.9 -4.3 hypothetical protein compare
BWI76_RS00400 -1.8 -1.6 glutamine synthetase compare
BWI76_RS05200 -1.8 -2.4 bifunctional uridylyltransferase/uridylyl-removing protein compare
BWI76_RS15840 -1.7 -3.2 prophage protein compare
BWI76_RS17980 -1.7 -3.4 RNA chaperone ProQ compare
BWI76_RS20145 -1.7 -1.8 NADH-quinone oxidoreductase subunit K compare
BWI76_RS23830 -1.7 -4.7 hypothetical protein compare
BWI76_RS15110 -1.7 -8.7 putative excinuclease ABC subunit A compare
BWI76_RS11275 -1.7 -6.1 sensor protein PhoQ compare
BWI76_RS18165 -1.7 -1.7 NUDIX pyrophosphatase compare
BWI76_RS26085 -1.7 -2.3 3-dehydroquinate synthase compare
BWI76_RS00720 -1.7 -1.6 DNA-binding response regulator compare
BWI76_RS21370 -1.7 -2.4 ATP-dependent RNA helicase SrmB compare
BWI76_RS08530 -1.6 -2.9 protein TolA compare
BWI76_RS08525 -1.6 -2.7 colicin transporter compare
BWI76_RS20720 -1.6 -1.2 hypothetical protein compare
BWI76_RS09530 -1.6 -1.4 hypothetical protein compare
BWI76_RS01085 -1.6 -4.5 polysaccharide chain length modulation protein compare
BWI76_RS08210 -1.6 -1.3 N-acetylglucosamine-6-phosphate deacetylase compare
BWI76_RS26455 -1.5 -3.4 4-amino-4-deoxy-L-arabinose-phospho-UDP flippase compare
BWI76_RS22050 -1.5 -3.6 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI conserved
BWI76_RS22055 -1.5 -7.8 ribonucleotide-diphosphate reductase conserved
BWI76_RS27820 -1.5 -1.6 ilvB operon leader peptide IvbL compare
BWI76_RS05120 -1.5 -7.1 bifunctional glycosyl transferase/transpeptidase compare
BWI76_RS21350 -1.5 -2.0 anti-RNA polymerase sigma factor SigE compare
BWI76_RS22060 -1.5 -7.8 ribonucleotide-diphosphate reductase subunit beta conserved
BWI76_RS13420 -1.4 -2.1 ABC transporter permease compare
BWI76_RS20925 -1.4 -4.0 peptidase M48 compare
BWI76_RS01105 -1.4 -2.9 glucose-1-phosphate thymidylyltransferase compare
BWI76_RS16995 -1.4 -6.8 Fe-S cluster assembly protein SufB compare
BWI76_RS20165 -1.4 -3.0 NADH-quinone oxidoreductase subunit G compare
BWI76_RS03045 -1.4 -1.3 hypothetical protein compare
BWI76_RS15850 -1.4 -1.0 DUF1317 domain-containing protein compare
BWI76_RS24930 -1.4 -4.6 osmotically-inducible protein OsmY compare
BWI76_RS14510 -1.4 -3.5 MFS transporter compare
BWI76_RS19115 -1.4 -4.5 outer membrane assembly protein AsmA compare
BWI76_RS21255 -1.4 -4.8 hypothetical protein compare
BWI76_RS13330 -1.4 -1.6 tellurite resistance methyltransferase TehB compare
BWI76_RS12470 -1.4 -1.7 thiosulfate sulfurtransferase PspE compare
BWI76_RS11370 -1.3 -2.5 iron-dicitrate transporter subunit FecD compare
BWI76_RS12495 -1.3 -1.7 2-Cys peroxiredoxin compare
BWI76_RS17155 -1.3 -1.6 hypothetical protein compare
BWI76_RS26200 -1.3 -5.5 starch synthase compare
BWI76_RS20130 -1.3 -2.8 NADH-quinone oxidoreductase subunit N compare
BWI76_RS08395 -1.3 -1.9 succinate dehydrogenase cytochrome b556 large subunit compare
BWI76_RS05175 -1.3 -11.0 dGTPase compare
BWI76_RS26190 -1.3 -3.3 glycerol-3-phosphate dehydrogenase compare
BWI76_RS16485 -1.3 -1.6 ribonuclease T compare
BWI76_RS20715 -1.3 -2.1 RpoE-regulated lipoprotein compare
BWI76_RS20170 -1.3 -3.1 NADH-quinone oxidoreductase subunit F compare
BWI76_RS14935 -1.2 -1.3 NIPSNAP family containing protein compare
BWI76_RS09970 -1.2 -1.9 porin OmpA compare
BWI76_RS22095 -1.2 -2.1 multidrug export protein EmrA compare
BWI76_RS00240 -1.2 -2.3 FMN-binding protein MioC compare
BWI76_RS23825 -1.2 -4.5 hypothetical protein compare
BWI76_RS21000 -1.2 -3.6 exopolyphosphatase compare
BWI76_RS16980 -1.2 -3.3 bifunctional cysteine desulfurase/selenocysteine lyase compare
BWI76_RS27165 -1.2 -2.6 mannitol-1-phosphate 5-dehydrogenase compare
BWI76_RS04305 -1.2 -1.0 molecular chaperone DnaJ compare
BWI76_RS21345 -1.2 -2.5 sigma-E factor regulatory protein RseB compare
BWI76_RS05260 -1.2 -1.4 chaperone compare
BWI76_RS11365 -1.2 -3.1 iron ABC transporter compare
BWI76_RS27225 -1.2 -2.5 rhodanese-like domain-containing protein compare
BWI76_RS08040 -1.2 -2.2 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
BWI76_RS24960 -1.2 -4.5 N-acetyltransferase compare
BWI76_RS08640 -1.2 -1.8 multidrug efflux pump-associated protein, AcrZ family compare
BWI76_RS19750 -1.2 -1.7 elongation factor P-like protein YeiP compare
BWI76_RS13595 -1.2 -3.2 transcriptional regulator compare
BWI76_RS27475 -1.2 -6.3 regulatory protein GntR family protein compare
BWI76_RS21340 -1.2 -1.9 SoxR reducing system protein RseC compare
BWI76_RS25960 -1.1 -3.3 NUDIX hydrolase compare
BWI76_RS20190 -1.1 -4.4 NADH-quinone oxidoreductase subunit A compare
BWI76_RS16910 -1.1 -2.2 2-keto-4-pentenoate hydratase compare
BWI76_RS05135 -1.1 -3.0 iron-hydroxamate transporter substrate-binding subunit compare
BWI76_RS23270 -1.1 -7.1 phosphoenolpyruvate--protein phosphotransferase PtsP compare
BWI76_RS23015 -1.1 -1.4 cobalt transporter ATP-binding subunit compare
BWI76_RS19805 -1.1 -2.5 Bcr/CflA family multidrug efflux MFS transporter compare
BWI76_RS20880 -1.1 -1.7 esterase compare
BWI76_RS27915 -1.1 -1.5 YceK/YidQ family lipoprotein compare
BWI76_RS11190 -1.1 -2.1 putative TetR/AcrR family transcriptional regulatory protein compare
BWI76_RS14755 -1.1 -1.9 SIS domain-containing protein compare
BWI76_RS21580 -1.1 -1.4 SsrA-binding protein compare
BWI76_RS20160 -1.0 -1.8 NADH-quinone oxidoreductase subunit H compare
BWI76_RS24275 -1.0 -1.4 biopolymer transport protein ExbD compare
BWI76_RS20050 -1.0 -1.2 hypothetical protein compare
BWI76_RS00380 -1.0 -5.1 oxygen-independent coproporphyrinogen III oxidase compare
BWI76_RS04510 -1.0 -1.5 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) compare
BWI76_RS26440 -1.0 -1.2 hypothetical protein compare
BWI76_RS27395 -1.0 -2.9 hypothetical protein compare
BWI76_RS26020 -1.0 -2.7 peptidylprolyl isomerase A compare
BWI76_RS13855 -1.0 -3.4 peroxiredoxin compare
BWI76_RS11990 -1.0 -3.4 exoribonuclease II compare
BWI76_RS21130 -1.0 -1.7 Fe-S assembly protein IscX compare
BWI76_RS07450 -1.0 -1.6 transcriptional regulator compare
BWI76_RS24315 -1.0 -3.7 cell division protein FtsP compare
BWI76_RS08020 -1.0 -2.8 serine-type D-Ala-D-Ala carboxypeptidase compare
BWI76_RS24380 -1.0 -4.4 esterase YqiA compare
BWI76_RS06540 -1.0 -1.3 DNA-binding protein HU-beta compare
BWI76_RS26470 -0.9 -2.6 4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase compare
BWI76_RS13890 -0.9 -2.5 LysR family transcriptional regulator compare
BWI76_RS00450 -0.9 -1.9 formate dehydrogenase accessory protein FdhE compare
BWI76_RS27440 -0.9 -2.5 DNA helicase RecG compare
BWI76_RS22650 -0.9 -3.5 lipoprotein NlpD compare
BWI76_RS08645 -0.9 -1.8 molybdate ABC transporter substrate-binding protein compare
BWI76_RS06740 -0.9 -2.5 50S ribosomal protein L36 compare
BWI76_RS00750 -0.9 -2.6 ATP-dependent protease ATP-binding subunit HslU compare
BWI76_RS01675 -0.9 -2.0 putative cytoplasmic protein compare
BWI76_RS19465 -0.9 -2.3 hypothetical protein compare
BWI76_RS25300 -0.9 -1.4 hybrid sensor histidine kinase/response regulator compare
BWI76_RS04525 -0.9 -1.0 4-hydroxythreonine-4-phosphate dehydrogenase PdxA compare
BWI76_RS21250 -0.9 -3.7 two-component system response regulator GlrR compare
BWI76_RS15300 -0.9 -3.0 multiple antibiotic resistance regulatory periplasmic protein MarB compare
BWI76_RS10990 -0.9 -2.1 dihydroorotase compare
BWI76_RS18240 -0.9 -1.4 L-arabinose ABC transporter permease AraH compare
BWI76_RS11130 -0.9 -2.7 PTS glucose transporter subunit IIBC compare
BWI76_RS17930 -0.9 -2.8 cold-shock protein CspC compare
BWI76_RS23480 -0.9 -4.5 EAL domain-containing protein compare
BWI76_RS27505 -0.9 -2.6 septal ring assembly protein ZapB compare


Specific Phenotypes

For 5 genes in this experiment

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted in Klebsiella michiganensis M5al

For supernatant Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted across organisms