Experiment set8IT059 for Caulobacter crescentus NA1000

Compare to:

PYE with CHIR-090 1 ug/mL

200 most detrimental genes:

  gene name fitness t score description  
CCNA_01756 +1.4 1.9 hypothetical protein compare
CCNA_02000 +1.2 1.5 SSU ribosomal protein S2P compare
CCNA_02646 +1.1 2.5 cell division protein MraZ compare
CCNA_01801 +1.1 5.0 hypothetical protein compare
CCNA_02760 +0.8 2.6 hypothetical protein compare
CCNA_03961 +0.8 2.7 hypothetical protein compare
CCNA_01804 +0.7 4.3 glutathione peroxidase compare
CCNA_03955 +0.7 1.2 hypothetical protein compare
CCNA_00807 +0.7 1.2 ribonuclease P protein component compare
CCNA_00517 +0.7 1.1 peptidyl-tRNA hydrolase compare
CCNA_03224 +0.7 2.1 hypothetical protein compare
CCNA_01712 +0.7 3.7 CopY/TcrY family transcriptional repressor compare
CCNA_01767 +0.7 2.3 cytochrome C family protein compare
CCNA_01840 +0.7 5.6 MerR-family transcriptional regulator compare
CCNA_01931 +0.7 4.8 TetR-family transcriptional regulator compare
CCNA_00931 +0.7 5.0 GTP cyclohydrolase II/3,4-dihydroxy-2-butanone-4-phosphate synthase compare
CCNA_03252 +0.7 4.3 CopY/TcrY-family transcriptional regulator compare
CCNA_02591 +0.7 2.8 glutaredoxin compare
CCNA_R0037 +0.7 3.1 tRNA-Glu compare
CCNA_02535 +0.7 0.7 DNA topoisomerase I compare
CCNA_01092 +0.6 2.6 ACT domain protein compare
CCNA_01942 +0.6 3.1 Rrf2 family protein compare
CCNA_00147 +0.6 1.2 hypothetical protein compare
CCNA_03964 +0.6 2.5 hypothetical protein compare
CCNA_01684 +0.6 4.1 phenylalanine-4-hydroxylase compare
CCNA_02103 +0.6 3.2 hypothetical protein compare
CCNA_02004 +0.6 1.5 SOS-induced inhibitor of cell division SidA compare
CCNA_01928 +0.6 2.3 conserved ACT domain protein compare
CCNA_01573 +0.6 3.6 ArsR-family transcriptional regulator compare
CCNA_01181 +0.6 3.4 hypothetical protein compare
CCNA_01006 +0.6 3.1 flagellar hook-basal body complex protein FliE compare
CCNA_01393 +0.6 5.3 soluble lytic murein transglycosylase compare
CCNA_02010 +0.6 0.8 hypothetical protein compare
CCNA_02026 +0.6 2.4 hypothetical protein compare
CCNA_02341 +0.6 3.9 small heat shock protein compare
CCNA_01913 +0.6 4.4 MarR-family transcriptional regulator compare
CCNA_01236 +0.6 1.4 general stress protein GsiB compare
CCNA_01361 +0.6 1.6 PepSY superfamily protein compare
CCNA_00347 +0.6 2.2 hypothetical protein compare
CCNA_03944 +0.6 0.6 hypothetical protein compare
CCNA_01338 +0.6 3.3 glyoxalase family protein compare
CCNA_00521 +0.6 0.9 antitoxin protein compare
CCNA_01731 +0.6 2.5 colicin V production protein CvpA compare
CCNA_01813 +0.6 3.6 tRNA-dihydrouridine synthase compare
CCNA_03940 +0.6 3.9 hypothetical protein compare
CCNA_01655 +0.6 3.4 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_01333 +0.6 2.7 hypothetical protein compare
CCNA_03490 +0.6 3.3 hypothetical protein compare
CCNA_00153 +0.6 1.7 adenine nucleotide exchange factor GrpE compare
CCNA_00518 +0.6 2.9 LSU ribosomal protein L25P compare
CCNA_02879 +0.5 0.8 genetic exchange related protein compare
CCNA_02582 +0.5 1.5 hypothetical protein compare
CCNA_02551 +0.5 2.4 hypothetical protein compare
CCNA_00804 +0.5 4.0 ASC-1 homology domain protein compare
CCNA_00706 +0.5 2.4 hypothetical protein compare
CCNA_01406 +0.5 3.5 metal-dependent hydrolase compare
CCNA_03762 +0.5 2.1 acetolactate synthase-related protein compare
CCNA_01680 +0.5 3.5 succinylarginine dihydrolase compare
CCNA_01505 +0.5 1.4 hypothetical protein compare
CCNA_00949 +0.5 1.1 hypothetical protein compare
CCNA_00032 +0.5 2.7 antitoxin protein VapB compare
CCNA_02567 +0.5 3.8 sensory transduction histidine kinase pleC compare
CCNA_01811 +0.5 2.1 competence/damage-inducible protein CinA compare
CCNA_00769 +0.5 3.7 TetR family transcriptional regulator compare
CCNA_00929 +0.5 4.0 Riboflavin-specific deaminase family protein compare
CCNA_02242 +0.5 3.7 PHB granule-associated protein, phasin2 compare
CCNA_00027 +0.5 0.9 2OG-Fe(II) oxygenase compare
CCNA_02330 +0.5 3.4 hypothetical protein compare
CCNA_01578 +0.5 3.1 beta-lactamase repressor compare
CCNA_03107 +0.5 3.0 cytidine deaminase compare
CCNA_00271 +0.5 1.4 hypothetical protein compare
CCNA_03314 +0.5 2.3 ferredoxin-NADP reductase compare
CCNA_00895 +0.5 3.6 hypothetical protein compare
CCNA_01851 +0.5 3.7 quinol cytochrome oxidase polypeptide II compare
CCNA_03984 +0.5 2.1 hypothetical protein compare
CCNA_02924 +0.5 1.2 hypothetical protein compare
CCNA_01531 +0.5 3.3 acetyltransferase compare
CCNA_03259 +0.5 3.5 mannose-6-phosphate isomerase compare
CCNA_03123 +0.5 3.4 ArsR-family transcriptional regulator compare
CCNA_02475 +0.5 3.5 transcriptional regulator vanR compare
CCNA_01614 +0.5 0.7 hypothetical protein compare
CCNA_00127 +0.5 2.1 KTSC domain protein compare
CCNA_01252 +0.5 4.4 soluble lytic murein transglycosylase compare
CCNA_01954 +0.5 1.8 ribonuclease E compare
CCNA_03515 +0.5 1.4 hypothetical protein compare
CCNA_02957 +0.5 3.1 ArsR-family transcriptional regulator compare
CCNA_00542 +0.5 2.1 hypothetical protein compare
CCNA_00726 +0.5 3.5 acyl-CoA dehydrogenase compare
CCNA_02279 +0.5 0.8 disulfide bond formation protein B compare
CCNA_02351 +0.5 2.8 uracil phosphoribosyltransferase compare
CCNA_01849 +0.5 2.7 quinol cytochrome oxidase polypeptide III compare
CCNA_02576 +0.5 3.3 phosphoribosylamidoimidazole-succinocarboxamide synthase compare
CCNA_01528 +0.5 3.0 flagellin fljK compare
CCNA_03012 +0.5 2.3 peroxiredoxin compare
CCNA_03965 +0.5 1.4 hypothetical protein compare
CCNA_01335 +0.5 3.2 ABC-type multidrug transport system, ATPase component compare
CCNA_01201 +0.5 2.0 hypothetical protein compare
CCNA_01526 +0.4 2.1 flagellar biosynthesis regulatory protein flaF compare
CCNA_01927 +0.4 2.0 enoyl-CoA hydratase compare
CCNA_02067 +0.4 2.8 conserved membrane spanning protein compare
CCNA_02265 +0.4 1.9 peptide methionine sulfoxide reductase msrB compare
CCNA_02063 +0.4 2.1 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_02575 +0.4 1.5 hypothetical protein compare
CCNA_01779 +0.4 2.2 hypothetical protein compare
CCNA_01619 +0.4 2.5 NYN domain protein compare
CCNA_03878 +0.4 0.6 ferrochelatase compare
CCNA_01850 +0.4 3.5 quinol cytochrome oxidase polypeptide I compare
CCNA_02728 +0.4 3.0 hypothetical protein compare
CCNA_02021 +0.4 1.6 hypothetical protein compare
CCNA_03930 +0.4 2.4 hypothetical protein compare
CCNA_02338 +0.4 3.0 hypothetical protein compare
CCNA_01339 +0.4 2.4 ArsR-family transcriptional regulator compare
CCNA_01541 +0.4 2.8 LysR-family transcriptional regulator compare
CCNA_01175 +0.4 2.3 uroporphyrin-III C-methyltransferase compare
CCNA_00765 +0.4 2.1 hypothetical protein compare
CCNA_00023 +0.4 1.2 putative periplasmic protein compare
CCNA_02875 +0.4 2.3 hypothetical protein compare
CCNA_03091 +0.4 0.9 redox cell cycle regulatory protein NstA compare
CCNA_03136 +0.4 1.8 flagellar export protein FliJ compare
CCNA_02225 +0.4 2.5 ArsR family/SAM-dependent transcriptional regulator compare
CCNA_02272 +0.4 1.9 hypothetical protein compare
CCNA_01707 +0.4 1.4 lacC: subunit of periplasmic glucoside 3-dehydrogenase (EC 1.1.99.13) (from data) compare
CCNA_02339 +0.4 3.5 methyltransferase compare
CCNA_01007 +0.4 2.3 hypothetical protein compare
CCNA_00919 +0.4 2.2 hypothetical protein compare
CCNA_00696 +0.4 2.7 O6-methylguanine-DNA methyltransferase compare
CCNA_02309 +0.4 1.7 EF hand domain protein compare
CCNA_02249 +0.4 1.8 conserved hypothetical cytosolic protein compare
CCNA_01752 +0.4 2.6 YicC-family protein compare
CCNA_02597 +0.4 2.3 hypothetical protein compare
CCNA_01035 +0.4 3.2 gamma-glutamyltranspeptidase compare
CCNA_00171 +0.4 2.4 type II secretion pathway protein C compare
CCNA_03070 +0.4 1.2 4-oxalocrotonate tautomerase compare
CCNA_01420 +0.4 2.4 NrdR family transcriptional regulator compare
CCNA_00954 +0.4 3.0 AAA-family response regulator flbD compare
CCNA_01962 +0.4 2.4 leucyl/phenylalanyl-tRNA--protein transferase compare
CCNA_01679 +0.4 2.6 succinylglutamic semialdehyde dehydrogenase compare
CCNA_01344 +0.4 2.3 hypothetical protein compare
CCNA_00161 +0.4 1.9 hypothetical protein compare
CCNA_00114 +0.4 1.8 MarR/EmrR-family transcriptional regulator compare
CCNA_02616 +0.4 2.8 4-hydroxyphenylpyruvate dioxygenase compare
CCNA_02805 +0.4 2.4 hypothetical protein compare
CCNA_03114 +0.4 1.3 hypothetical protein compare
CCNA_00535 +0.4 0.8 hypothetical protein compare
CCNA_03129 +0.4 3.2 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_R0047 +0.4 1.6 tRNA-Val compare
CCNA_00699 +0.4 1.7 LSU ribosomal protein L28P compare
CCNA_03289 +0.4 2.2 HicB-family RNA-binding protein compare
CCNA_01186 +0.4 1.8 hypothetical protein compare
CCNA_02657 +0.4 2.2 hypothetical protein compare
CCNA_00444 +0.4 2.7 chemotaxis protein methyltransferase compare
CCNA_02289 +0.4 2.3 MarR/EmrR family transcriptional regulator compare
CCNA_03156 +0.4 2.5 putative periplasmic protein compare
CCNA_01678 +0.4 2.6 arginine N-succinyltransferase, beta chain compare
CCNA_03643 +0.4 0.5 succinate dehydrogenase membrane anchor subunit compare
CCNA_00515 +0.4 3.3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase compare
CCNA_03881 +0.4 1.7 beta-lactamse domain-containing protein compare
CCNA_01728 +0.4 2.0 short chain dehydrogenase compare
CCNA_01413 +0.4 2.2 phosphoglycerate mutase family protein compare
CCNA_01629 +0.4 2.0 signal peptidase I compare
CCNA_01949 +0.4 1.2 bactofilin A BacA compare
CCNA_03530 +0.4 1.5 hypothetical protein compare
CCNA_00947 +0.4 3.1 flagellar hook protein FlgE compare
CCNA_02461 +0.4 2.4 hypothetical protein compare
CCNA_03267 +0.4 2.3 HipB-related transcriptional regulatory protein compare
CCNA_01184 +0.4 2.4 MutT/nudix family hydrolase compare
CCNA_00992 +0.4 3.0 hypothetical protein compare
CCNA_01416 +0.4 2.4 3-hydroxyisobutyrate dehydrogenase compare
CCNA_00102 +0.4 2.1 hypothetical protein compare
CCNA_02997 +0.4 1.4 cold shock protein CspA compare
CCNA_00129 +0.4 1.8 hypothetical protein compare
CCNA_03809 +0.4 2.1 organic solvent resistance transport system permease compare
CCNA_01603 +0.4 2.4 aspartate aminotransferase compare
CCNA_03403 +0.4 1.7 small coiled-coil domain protein compare
CCNA_02732 +0.4 2.3 hypothetical protein compare
CCNA_03989 +0.4 2.9 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_02467 +0.4 2.7 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_01778 +0.4 2.7 penicillin-binding protein compare
CCNA_00930 +0.4 2.8 riboflavin synthase alpha chain compare
CCNA_00149 +0.4 2.0 Cro/CI-family transcriptional regulator compare
CCNA_02379 +0.4 2.2 hypothetical protein compare
CCNA_01926 +0.4 2.0 GGDEF diguanylate cyclase DgcB compare
CCNA_02298 +0.4 2.2 MJ0042 family finger-like domain protein compare
CCNA_00750 +0.4 2.8 FeaR-family transcriptional regulator compare
CCNA_02939 +0.4 1.4 hypothetical protein compare
CCNA_01548 +0.4 2.4 transporter, major facilitator superfamily compare
CCNA_01094 +0.4 1.7 hypothetical protein compare
CCNA_00932 +0.4 2.6 6,7-dimethyl-8-ribityllumazine synthase compare
CCNA_02163 +0.4 2.6 hypothetical protein compare
CCNA_01530 +0.4 2.9 flagellin FljJ compare
CCNA_03089 +0.4 2.0 hypothetical protein compare
CCNA_01790 +0.4 1.9 protein translocase subunit secG compare
CCNA_03555 +0.4 2.7 esterase lipase family protein compare
CCNA_00834 +0.4 2.5 flagellin FljM compare
CCNA_02963 +0.4 1.2 hypothetical protein compare
CCNA_03876 +0.4 0.3 transcription termination factor rho compare
CCNA_02034 +0.4 2.5 luciferase-like monooxygenase compare
CCNA_03215 +0.4 2.7 ARO8 family aminotransferase/HTH DNA-binding protein compare
CCNA_00028 +0.4 1.0 TonB-dependent receptor compare
CCNA_02601 +0.4 2.9 glutathione-dependent formaldehyde dehydrogenase compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress CHIR-090 across organisms