Experiment set8IT057 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction, replicate C, timepoint 3

Genes with specific phenotypes:

  gene name fitness t score description  
Pf1N1B4_1818 -2.2 -6.8 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_5749 -1.7 -5.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_1820 -1.0 -6.2 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) compare
Pf1N1B4_920 +1.2 6.9 ATP-dependent RNA helicase RhlB compare
Pf1N1B4_2406 +1.2 5.1 COG1451: Predicted metal-dependent hydrolase compare
Pf1N1B4_3883 +1.3 5.6 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_2357 +1.3 7.0 type IV pilus biogenesis protein PilJ compare
Pf1N1B4_5774 +1.3 5.7 Nitrite reductase associated c-type cytochorome NirN compare
Pf1N1B4_1914 +1.4 7.6 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) compare
Pf1N1B4_3884 +1.5 10.5 Cytochrome c oxidase subunit CcoN (EC 1.9.3.1) compare
Pf1N1B4_2861 +1.6 5.1 glutamyl-Q-tRNA synthetase compare
Pf1N1B4_1884 +1.6 8.7 Sensory box histidine kinase compare
Pf1N1B4_3514 +1.7 11.5 Sensor histidine kinase/response regulator compare
Pf1N1B4_3881 +1.9 9.2 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_2837 +1.9 9.0 FIG00956650: hypothetical protein compare
Pf1N1B4_5772 +2.8 9.2 Heme d1 biosynthesis protein NirJ compare
Pf1N1B4_5767 +3.0 9.9 Heme d1 biosynthesis protein NirF compare
Pf1N1B4_5764 +3.0 12.4 Cytochrome cd1 nitrite reductase (EC:1.7.2.1) compare


Specific phenotypes for denitrifying Sodium pyruvate across organisms