Experiment set8IT057 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction, replicate C, timepoint 3

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_952 -5.5 -5.3 Cell division protein MraZ compare
Pf1N1B4_1472 -2.8 -1.2 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_2176 -2.8 -3.8 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_4107 -2.7 -2.4 Probable glutathione S-transferase (EC 2.5.1.18), YfcF homolog compare
Pf1N1B4_5030 -2.6 -5.5 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_5735 -2.5 -11.6 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_1749 -2.4 -3.4 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_4476 -2.3 -4.9 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_339 -2.3 -1.4 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1818 -2.2 -6.8 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_284 -2.1 -13.9 Universal stress protein family compare
Pf1N1B4_5962 -2.1 -3.6 hypothetical protein compare
Pf1N1B4_3849 -2.1 -3.2 Transcriptional regulator, GntR family compare
Pf1N1B4_5620 -1.9 -3.3 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_6 -1.9 -3.7 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2880 -1.9 -8.8 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5762 -1.9 -2.2 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_1408 -1.9 -3.9 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_4833 -1.8 -2.9 DNA-binding response regulator, LuxR family compare
Pf1N1B4_4717 -1.8 -1.7 Agmatinase (EC 3.5.3.11) compare
Pf1N1B4_4470 -1.8 -3.4 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_3281 -1.8 -4.9 AidA compare
Pf1N1B4_3445 -1.7 -4.0 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_196 -1.7 -3.5 FIG137594: Putative iron-regulated membrane protein compare
Pf1N1B4_5483 -1.7 -2.5 hypothetical protein compare
Pf1N1B4_1613 -1.7 -3.9 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_5758 -1.7 -3.5 Nitric oxide reductase activation protein NorD conserved
Pf1N1B4_5756 -1.7 -3.1 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_5749 -1.7 -5.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_2545 -1.6 -8.6 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_3091 -1.6 -5.6 Membrane-associated zinc metalloprotease compare
Pf1N1B4_5751 -1.6 -3.9 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_5745 -1.6 -3.8 FIG139928: Putative protease compare
Pf1N1B4_2048 -1.6 -3.3 hypothetical protein compare
Pf1N1B4_5746 -1.6 -3.7 FIG139552: Putative protease compare
Pf1N1B4_1534 -1.5 -9.8 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_742 -1.5 -6.2 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_1067 -1.5 -2.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_5747 -1.5 -2.2 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_1993 -1.5 -0.7 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_5736 -1.5 -2.9 Nitrate/nitrite transporter compare
Pf1N1B4_5777 -1.5 -2.5 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_1113 -1.5 -3.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_262 -1.5 -11.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_5763 -1.5 -1.6 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_3976 -1.5 -5.4 Transmembrane regulator protein PrtR compare
Pf1N1B4_22 -1.5 -4.0 Transcriptional regulator, TetR family compare
Pf1N1B4_5312 -1.5 -3.8 Putative activity regulator of membrane protease YbbK compare
Pf1N1B4_3907 -1.5 -1.8 FIG00953287: hypothetical protein compare
Pf1N1B4_3590 -1.5 -4.8 hypothetical protein compare
Pf1N1B4_5729 -1.4 -4.5 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_4953 -1.4 -1.9 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_2067 -1.4 -3.4 Type VI secretion lipoprotein/VasD compare
Pf1N1B4_3356 -1.4 -2.1 Cyclic nucleotide-binding protein compare
Pf1N1B4_5734 -1.4 -4.0 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_5611 -1.4 -2.0 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_2807 -1.4 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_5031 -1.4 -2.5 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_5242 -1.4 -2.2 hypothetical protein compare
Pf1N1B4_847 -1.3 -3.9 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_3697 -1.3 -5.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_4834 -1.3 -4.0 Sensor histidine kinase compare
Pf1N1B4_5759 -1.3 -1.9 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_4700 -1.3 -1.8 FIG00956898: hypothetical protein compare
Pf1N1B4_3982 -1.3 -4.6 FIG00953347: hypothetical protein compare
Pf1N1B4_5109 -1.3 -1.4 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_1725 -1.3 -7.3 Sulfate transport system permease protein CysW compare
Pf1N1B4_4132 -1.3 -1.6 Mobile element protein compare
Pf1N1B4_1627 -1.3 -3.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_4857 -1.3 -4.3 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3506 -1.3 -4.2 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_12 -1.3 -3.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_345 -1.3 -1.2 Integration host factor beta subunit compare
Pf1N1B4_1683 -1.2 -1.5 Alpha-ketoglutarate-dependent taurine dioxygenase (EC 1.14.11.17) compare
Pf1N1B4_1590 -1.2 -2.7 Histidine utilization repressor compare
Pf1N1B4_5781 -1.2 -4.4 Nitrous-oxide reductase (EC 1.7.99.6) compare
Pf1N1B4_2060 -1.2 -1.8 hypothetical protein compare
Pf1N1B4_1626 -1.2 -3.8 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_2338 -1.2 -3.2 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4657 -1.2 -2.1 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_4275 -1.2 -2.8 Inosose dehydratase (EC 4.2.1.44) compare
Pf1N1B4_1630 -1.2 -3.3 A/G-specific adenine glycosylase (EC 3.2.2.-) compare
Pf1N1B4_1624 -1.2 -3.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_1837 -1.2 -0.7 Osmotically inducible protein C compare
Pf1N1B4_1262 -1.1 -2.6 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_2272 -1.1 -1.7 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_2112 -1.1 -5.8 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2940 -1.1 -3.8 hypothetical protein compare
Pf1N1B4_5610 -1.1 -4.1 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
Pf1N1B4_2536 -1.1 -5.0 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_1434 -1.1 -3.5 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2280 -1.1 -4.7 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_4739 -1.1 -3.8 Ribosyl nicotinamide transporter, PnuC-like compare
Pf1N1B4_4418 -1.1 -1.7 hypothetical protein compare
Pf1N1B4_101 -1.1 -2.6 hypothetical protein compare
Pf1N1B4_5425 -1.1 -1.9 DNA-binding protein HU-beta compare
Pf1N1B4_1411 -1.1 -2.2 GTP-binding protein HflX compare
Pf1N1B4_2549 -1.1 -4.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2401 -1.1 -1.6 Lipoprotein, putative compare
Pf1N1B4_2840 -1.1 -2.4 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_1705 -1.1 -2.7 SAM-dependent methyltransferases compare
Pf1N1B4_3585 -1.1 -2.2 UDP-N-acetylglucosamine 4,6-dehydratase (EC 4.2.1.-) compare
Pf1N1B4_1533 -1.0 -3.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1819 -1.0 -1.2 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_2868 -1.0 -2.8 ABC-type hemin transport system, ATPase component compare
Pf1N1B4_1135 -1.0 -2.0 FIG00960055: hypothetical protein compare
Pf1N1B4_1535 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_4952 -1.0 -1.9 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_1820 -1.0 -6.2 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) compare
Pf1N1B4_27 -1.0 -1.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_4731 -1.0 -2.1 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_3134 -1.0 -1.3 probable tail fiber assembly-like protein compare
Pf1N1B4_1313 -1.0 -5.1 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf1N1B4_5738 -1.0 -3.7 Nitrate/nitrite transporter compare
Pf1N1B4_787 -1.0 -2.1 Nudix hydrolase family protein PA3470 compare
Pf1N1B4_4685 -1.0 -4.4 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) compare
Pf1N1B4_5567 -1.0 -3.0 transcriptional regulator MvaT, P16 subunit, putative compare
Pf1N1B4_4100 -1.0 -3.8 probable transmembrane protein compare
Pf1N1B4_3993 -1.0 -3.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_97 -1.0 -3.3 Selenide,water dikinase (EC 2.7.9.3) compare
Pf1N1B4_5116 -1.0 -4.4 Sucrose alpha-glucosidase (EC 3.2.1.48) (from data) compare
Pf1N1B4_2560 -1.0 -4.7 hypothetical protein compare
Pf1N1B4_3591 -1.0 -2.9 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_4320 -1.0 -2.7 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_2548 -1.0 -1.8 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1845 -1.0 -0.6 FIG00954395: hypothetical protein compare
Pf1N1B4_337 -0.9 -2.9 O-antigen export system permease protein RfbD compare
Pf1N1B4_3955 -0.9 -1.7 2,4-dienoyl-CoA reductase [NADPH] (EC 1.3.1.34) compare
Pf1N1B4_3458 -0.9 -1.8 hypothetical protein compare
Pf1N1B4_3991 -0.9 -1.9 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_2282 -0.9 -2.3 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4879 -0.9 -3.2 Chromosome segregation ATPases compare
Pf1N1B4_5665 -0.9 -2.7 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_232 -0.9 -0.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5783 -0.9 -3.1 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_1147 -0.9 -4.5 Fructose repressor FruR, LacI family compare
Pf1N1B4_5136 -0.9 -3.5 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_5311 -0.9 -0.8 hypothetical protein compare
Pf1N1B4_2684 -0.9 -2.5 Uncharacterized protein, similar to the N-terminal domain of Lon protease compare
Pf1N1B4_5699 -0.9 -2.2 ABC-type uncharacterized transport system, ATPase component compare
Pf1N1B4_2195 -0.9 -0.6 Small-conductance mechanosensitive channel compare
Pf1N1B4_4592 -0.9 -1.5 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_5393 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_4065 -0.9 -1.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_1588 -0.9 -3.1 hypothetical protein compare
Pf1N1B4_3997 -0.9 -3.7 Uncharacterized protein YtfM precursor compare
Pf1N1B4_1328 -0.9 -1.1 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_5480 -0.9 -2.1 hypothetical protein compare
Pf1N1B4_627 -0.9 -1.9 hypothetical protein compare
Pf1N1B4_5243 -0.9 -2.4 hypothetical protein compare
Pf1N1B4_3826 -0.9 -3.8 Phosphoenolpyruvate synthase (EC 2.7.9.2) compare
Pf1N1B4_617 -0.9 -1.7 Carbamate kinase (EC 2.7.2.2) compare
Pf1N1B4_3498 -0.9 -1.9 FIG00953240: hypothetical protein compare
Pf1N1B4_2337 -0.9 -2.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3818 -0.9 -1.9 Propionate catabolism operon transcriptional regulator of GntR family [predicted] compare
Pf1N1B4_1527 -0.9 -2.9 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_3831 -0.9 -2.4 CmpX compare
Pf1N1B4_758 -0.9 -2.2 Bacterioferritin compare
Pf1N1B4_2225 -0.9 -4.2 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_5293 -0.9 -1.2 hypothetical protein compare
Pf1N1B4_3504 -0.9 -2.9 Two-component sensor histidine kinase PfeS, enterobactin compare
Pf1N1B4_5370 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_4295 -0.9 -1.9 FIG00954434: hypothetical protein compare
Pf1N1B4_3690 -0.9 -2.3 FIG00956080: hypothetical protein compare
Pf1N1B4_2659 -0.9 -4.1 Vitamin B12 ABC transporter, B12-binding component BtuF compare
Pf1N1B4_4522 -0.9 -2.2 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf1N1B4_603 -0.8 -3.6 Methylglyoxal synthase (EC 4.2.3.3) compare
Pf1N1B4_5317 -0.8 -3.2 hypothetical protein compare
Pf1N1B4_4501 -0.8 -3.5 Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8) compare
Pf1N1B4_5029 -0.8 -1.4 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_2206 -0.8 -3.4 FIG139438: lipoprotein B compare
Pf1N1B4_3312 -0.8 -2.5 Tricarboxylate transport protein TctB compare
Pf1N1B4_4666 -0.8 -3.5 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_2660 -0.8 -5.6 Outer membrane vitamin B12 receptor BtuB compare
Pf1N1B4_689 -0.8 -3.5 FIG00954888: hypothetical protein compare
Pf1N1B4_3443 -0.8 -1.6 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_13 -0.8 -0.6 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_3609 -0.8 -1.5 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf1N1B4_1374 -0.8 -2.0 HupE-UreJ family metal transporter compare
Pf1N1B4_3965 -0.8 -1.1 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_5830 -0.8 -2.7 FIG023677: hypothetical protein compare
Pf1N1B4_2773 -0.8 -1.9 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_5695 -0.8 -1.8 Aldehyde dehydrogenase A (EC 1.2.1.22) compare
Pf1N1B4_3779 -0.8 -2.0 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_4897 -0.8 -1.4 Transcriptional regulator, LysR family compare
Pf1N1B4_4531 -0.8 -2.4 FIG01221261: hypothetical protein compare
Pf1N1B4_5880 -0.8 -2.3 AttH component of AttEFGH ABC transport system compare
Pf1N1B4_3073 -0.8 -2.3 probable glucosyl transferase compare
Pf1N1B4_4165 -0.8 -2.8 Aspartyl-tRNA(Asn) amidotransferase subunit A (EC 6.3.5.6) @ Glutamyl-tRNA(Gln) amidotransferase subunit A (EC 6.3.5.7) compare
Pf1N1B4_3830 -0.8 -1.9 CrfX protein compare
Pf1N1B4_5591 -0.8 -2.4 Vanillin dehydrogenase (Hydroxybenzaldehyde dehydrogenase) (EC 1.2.1.28) compare
Pf1N1B4_448 -0.8 -0.8 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_784 -0.8 -4.2 Transcriptional activator MetR compare
Pf1N1B4_582 -0.8 -1.8 FIG00959696: hypothetical protein compare
Pf1N1B4_1608 -0.8 -2.5 FIG00956533: hypothetical protein compare
Pf1N1B4_2252 -0.8 -2.2 Organosulfonate utilization protein SsuF compare
Pf1N1B4_5074 -0.8 -2.3 Gluconate permease compare
Pf1N1B4_2936 -0.8 -4.4 Putative sulfate permease conserved
Pf1N1B4_1481 -0.8 -3.1 Protein involved in catabolism of external DNA compare
Pf1N1B4_2635 -0.8 -0.9 hypothetical protein compare


Specific Phenotypes

For 18 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For denitrifying Sodium pyruvate across organisms