Experiment set8IT056 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction, replicate A, timepoint 2

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_345 -4.6 -1.8 Integration host factor beta subunit compare
Pf1N1B4_952 -3.4 -7.0 Cell division protein MraZ compare
Pf1N1B4_2176 -2.9 -4.3 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_284 -2.7 -16.3 Universal stress protein family compare
Pf1N1B4_5735 -2.7 -12.2 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_1113 -2.5 -5.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_5745 -2.4 -3.6 FIG139928: Putative protease compare
Pf1N1B4_22 -2.4 -10.5 Transcriptional regulator, TetR family compare
Pf1N1B4_5029 -2.3 -3.1 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_5758 -2.3 -5.2 Nitric oxide reductase activation protein NorD conserved
Pf1N1B4_3976 -2.3 -7.1 Transmembrane regulator protein PrtR compare
Pf1N1B4_3849 -2.3 -4.0 Transcriptional regulator, GntR family compare
Pf1N1B4_5962 -2.3 -5.3 hypothetical protein compare
Pf1N1B4_2880 -2.3 -9.4 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5030 -2.2 -4.4 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_4476 -2.2 -5.6 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_6 -2.2 -3.9 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_2545 -2.2 -10.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_5751 -2.1 -4.2 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_4834 -2.1 -4.1 Sensor histidine kinase compare
Pf1N1B4_3965 -2.0 -2.2 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_15 -2.0 -2.9 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_5729 -2.0 -5.7 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_1408 -2.0 -4.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_5760 -1.9 -1.9 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_5610 -1.9 -6.1 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
Pf1N1B4_5763 -1.9 -1.8 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_1627 -1.8 -4.7 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_742 -1.8 -6.4 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_3697 -1.8 -6.1 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_1067 -1.8 -4.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_262 -1.8 -13.2 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_5734 -1.7 -4.2 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_2280 -1.7 -5.9 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_1993 -1.7 -0.8 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_3907 -1.7 -2.2 FIG00953287: hypothetical protein compare
Pf1N1B4_3281 -1.7 -5.0 AidA compare
Pf1N1B4_5611 -1.7 -2.4 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_2536 -1.7 -6.8 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_1749 -1.7 -3.5 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_2807 -1.6 -1.6 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_1534 -1.6 -10.6 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_3993 -1.6 -2.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_2773 -1.6 -1.5 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_3091 -1.6 -2.6 Membrane-associated zinc metalloprotease compare
Pf1N1B4_5746 -1.5 -3.6 FIG139552: Putative protease compare
Pf1N1B4_2549 -1.5 -5.4 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_847 -1.5 -5.2 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_12 -1.5 -3.7 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_4835 -1.5 -1.8 Carbon starvation protein A compare
Pf1N1B4_1626 -1.5 -4.7 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1262 -1.5 -4.1 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_5736 -1.5 -3.7 Nitrate/nitrite transporter compare
Pf1N1B4_5777 -1.5 -2.6 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_5665 -1.5 -2.9 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_3830 -1.5 -2.3 CrfX protein compare
Pf1N1B4_5031 -1.5 -2.9 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_5567 -1.4 -4.2 transcriptional regulator MvaT, P16 subunit, putative compare
Pf1N1B4_3506 -1.4 -4.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_5666 -1.4 -1.4 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2338 -1.4 -4.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3168 -1.4 -2.2 AmpG permease compare
Pf1N1B4_4783 -1.3 -3.1 Transcriptional regulator, AraC family compare
Pf1N1B4_3036 -1.3 -1.8 Chemotaxis signal transduction protein compare
Pf1N1B4_2272 -1.3 -2.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_3636 -1.3 -1.2 FIG00953562: hypothetical protein compare
Pf1N1B4_1434 -1.3 -4.4 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_3927 -1.3 -1.7 hypothetical protein compare
Pf1N1B4_1725 -1.3 -6.9 Sulfate transport system permease protein CysW compare
Pf1N1B4_3766 -1.3 -4.1 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_1313 -1.3 -5.0 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf1N1B4_1533 -1.2 -4.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5756 -1.2 -2.3 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_5780 -1.2 -3.4 Nitrous oxide reductase maturation protein NosD compare
Pf1N1B4_4433 -1.2 -2.0 FIG035246: DoxX family protein compare
Pf1N1B4_1328 -1.2 -1.4 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_3831 -1.2 -2.9 CmpX compare
Pf1N1B4_236 -1.2 -4.1 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_1590 -1.2 -2.5 Histidine utilization repressor compare
Pf1N1B4_1726 -1.2 -3.4 Sulfate transport system permease protein CysT compare
Pf1N1B4_196 -1.2 -3.6 FIG137594: Putative iron-regulated membrane protein compare
Pf1N1B4_2112 -1.2 -6.1 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_2651 -1.2 -1.6 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_5749 -1.2 -3.9 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_27 -1.2 -2.0 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_2958 -1.2 -1.0 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_4297 -1.2 -1.5 FIG00966599: hypothetical protein compare
Pf1N1B4_4797 -1.2 -2.5 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_5759 -1.1 -2.6 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_1147 -1.1 -5.6 Fructose repressor FruR, LacI family compare
Pf1N1B4_396 -1.1 -4.5 D-galactonate regulator, IclR family compare
Pf1N1B4_2936 -1.1 -5.9 Putative sulfate permease conserved
Pf1N1B4_5768 -1.1 -2.0 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_4590 -1.1 -3.0 Oligopeptide transport system permease protein OppB (TC 3.A.1.5.1) compare
Pf1N1B4_5747 -1.1 -2.6 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_2840 -1.1 -3.0 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_4740 -1.1 -1.8 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) compare
Pf1N1B4_3078 -1.1 -1.3 FIG138056: a glutathione-dependent thiol reductase compare
Pf1N1B4_1411 -1.1 -3.2 GTP-binding protein HflX compare
Pf1N1B4_1831 -1.1 -3.1 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1059 -1.1 -1.7 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_5243 -1.1 -2.9 hypothetical protein compare
Pf1N1B4_4494 -1.1 -1.0 hypothetical protein compare
Pf1N1B4_3351 -1.1 -1.7 FIG00954302: hypothetical protein compare
Pf1N1B4_3510 -1.1 -2.7 nucleoprotein/polynucleotide-associated enzyme compare
Pf1N1B4_875 -1.1 -0.7 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1527 -1.1 -3.0 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_5812 -1.0 -2.9 FIG00955248: hypothetical protein compare
Pf1N1B4_1 -1.0 -0.7 Colicin V production protein compare
Pf1N1B4_5552 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_2303 -1.0 -5.4 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_4700 -1.0 -2.7 FIG00956898: hypothetical protein compare
Pf1N1B4_1535 -1.0 -2.8 hypothetical protein compare
Pf1N1B4_5255 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_77 -1.0 -2.4 FIG00956064: hypothetical protein compare
Pf1N1B4_2282 -1.0 -3.6 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2411 -1.0 -1.1 FIG00953568: hypothetical protein compare
Pf1N1B4_1624 -1.0 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_2225 -1.0 -5.6 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_4739 -1.0 -4.7 Ribosyl nicotinamide transporter, PnuC-like compare
Pf1N1B4_126 -1.0 -2.1 Pirin compare
Pf1N1B4_777 -1.0 -5.4 Membrane protein glpM compare
Pf1N1B4_2184 -1.0 -3.7 Autolysis response regulater LytR compare
Pf1N1B4_4065 -1.0 -2.8 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_846 -1.0 -1.4 hypothetical protein compare
Pf1N1B4_1469 -1.0 -6.6 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_4522 -1.0 -2.5 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf1N1B4_1724 -1.0 -2.2 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_3119 -1.0 -2.0 Holin compare
Pf1N1B4_5937 -1.0 -3.2 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
Pf1N1B4_3141 -1.0 -1.2 FIG00959768: hypothetical protein compare
Pf1N1B4_1812 -0.9 -3.5 Iron siderophore sensor protein compare
Pf1N1B4_3372 -0.9 -1.5 FIG00962464: hypothetical protein compare
Pf1N1B4_1792 -0.9 -1.1 Taurine transport ATP-binding protein TauB compare
Pf1N1B4_3843 -0.9 -1.1 Ribosome modulation factor compare
Pf1N1B4_629 -0.9 -1.8 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_5498 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_1916 -0.9 -0.8 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_2975 -0.9 -1.3 Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12) compare
Pf1N1B4_4761 -0.9 -2.5 hypothetical protein compare
Pf1N1B4_237 -0.9 -0.6 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_5505 -0.9 -3.3 hypothetical protein compare
Pf1N1B4_16 -0.9 -2.3 Cys regulon transcriptional activator CysB compare
Pf1N1B4_5620 -0.9 -2.4 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_5779 -0.9 -1.2 Nitrous oxide reductase maturation protein NosF (ATPase) compare
Pf1N1B4_2054 -0.9 -2.2 FIG00964469: hypothetical protein compare
Pf1N1B4_5274 -0.9 -3.1 hypothetical protein compare
Pf1N1B4_3868 -0.9 -2.0 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_5242 -0.9 -2.0 hypothetical protein compare
Pf1N1B4_4860 -0.9 -1.4 Sensory box sensor histidine kinase/response regulator (EC 2.7.3.-) compare
Pf1N1B4_4055 -0.9 -3.3 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_574 -0.9 -2.1 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_1691 -0.9 -0.9 hypothetical protein compare
Pf1N1B4_76 -0.9 -1.2 ATP binding protein compare
Pf1N1B4_5590 -0.9 -2.2 Trans-feruloyl-CoA synthase (EC 6.2.1.34) compare
Pf1N1B4_239 -0.9 -3.0 Similar to ribosomal large subunit pseudouridine synthase A compare
Pf1N1B4_2337 -0.9 -2.3 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_4234 -0.9 -3.3 putative transport protein compare
Pf1N1B4_448 -0.9 -0.9 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_3887 -0.9 -2.5 CAAX amino terminal protease family protein compare
Pf1N1B4_3126 -0.9 -2.5 Phage tail length tape-measure protein compare
Pf1N1B4_5764 -0.9 -3.8 Cytochrome cd1 nitrite reductase (EC:1.7.2.1) compare
Pf1N1B4_4303 -0.8 -2.9 DipZ protein compare
Pf1N1B4_4320 -0.8 -2.0 Phosphonate ABC transporter permease protein phnE2 (TC 3.A.1.9.1) compare
Pf1N1B4_4931 -0.8 -1.4 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_1081 -0.8 -1.1 Ribosome hibernation protein YhbH compare
Pf1N1B4_1637 -0.8 -0.9 FIG00954739: hypothetical protein compare
Pf1N1B4_2872 -0.8 -4.8 FIG00955330: hypothetical protein compare
Pf1N1B4_5138 -0.8 -3.0 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain compare
Pf1N1B4_3799 -0.8 -2.7 1-acyl-sn-glycerol-3-phosphate acyltransferase (EC 2.3.1.51) compare
Pf1N1B4_4594 -0.8 -1.3 Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) compare
Pf1N1B4_558 -0.8 -4.9 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf1N1B4_2047 -0.8 -1.6 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_1366 -0.8 -1.2 FMN-dependent NADH-azoreductase compare
Pf1N1B4_784 -0.8 -4.8 Transcriptional activator MetR compare
Pf1N1B4_5738 -0.8 -2.2 Nitrate/nitrite transporter compare
Pf1N1B4_1804 -0.8 -4.4 Predicted regulator PutR for proline utilization, GntR family compare
Pf1N1B4_4857 -0.8 -2.7 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_2776 -0.8 -1.3 Transcriptional regulator, GntR family compare
Pf1N1B4_117 -0.8 -3.3 Iron siderophore sensor protein compare
Pf1N1B4_4052 -0.8 -3.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_128 -0.8 -2.2 Methylglyoxal reductase, acetol producing (EC 1.1.1.-) / 2,5-diketo-D-gluconic acid reductase B (EC 1.1.1.274) compare
Pf1N1B4_2688 -0.8 -1.6 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_5433 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_2867 -0.8 -2.6 Hemin ABC transporter, permease protein compare
Pf1N1B4_770 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_5506 -0.8 -2.9 hypothetical protein compare
Pf1N1B4_5772 -0.8 -3.2 Heme d1 biosynthesis protein NirJ compare
Pf1N1B4_3547 -0.8 -1.3 DNA-binding response regulator compare
Pf1N1B4_2748 -0.8 -3.4 Transcriptional regulator, TetR family compare
Pf1N1B4_5340 -0.8 -1.8 hypothetical protein compare
Pf1N1B4_97 -0.8 -3.5 Selenide,water dikinase (EC 2.7.9.3) compare
Pf1N1B4_2273 -0.8 -2.8 hypothetical protein compare
Pf1N1B4_5781 -0.8 -4.2 Nitrous-oxide reductase (EC 1.7.99.6) compare
Pf1N1B4_2548 -0.8 -2.2 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1159 -0.8 -0.9 tRNA pseudouridine synthase B (EC 4.2.1.70) compare
Pf1N1B4_35 -0.8 -1.2 hypothetical protein compare
Pf1N1B4_5560 -0.8 -0.8 hypothetical protein compare
Pf1N1B4_5057 -0.8 -2.8 mandelate racemase family protein Pfl_3283 compare
Pf1N1B4_1975 -0.8 -1.9 Transcriptional regulator, AsnC family compare


Specific Phenotypes

For 15 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For denitrifying Sodium pyruvate across organisms