Experiment set8IT054 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction, replicate A, timepoint 1

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_2176 -3.2 -4.7 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_952 -2.5 -5.8 Cell division protein MraZ compare
Pf1N1B4_4835 -2.1 -1.9 Carbon starvation protein A compare
Pf1N1B4_1113 -2.0 -6.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_3976 -1.8 -7.1 Transmembrane regulator protein PrtR compare
Pf1N1B4_5735 -1.7 -9.6 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_2880 -1.6 -10.7 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5763 -1.6 -2.4 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_5758 -1.6 -7.5 Nitric oxide reductase activation protein NorD conserved
Pf1N1B4_4834 -1.6 -5.6 Sensor histidine kinase compare
Pf1N1B4_3993 -1.6 -4.3 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_5029 -1.6 -3.7 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_5729 -1.6 -6.4 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_742 -1.5 -8.3 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_5745 -1.5 -3.8 FIG139928: Putative protease compare
Pf1N1B4_284 -1.5 -11.5 Universal stress protein family compare
Pf1N1B4_6 -1.5 -4.2 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_1262 -1.5 -5.2 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_1067 -1.4 -6.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_2545 -1.4 -9.7 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1534 -1.4 -11.9 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_22 -1.4 -7.8 Transcriptional regulator, TetR family compare
Pf1N1B4_345 -1.4 -1.4 Integration host factor beta subunit compare
Pf1N1B4_2280 -1.4 -7.3 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_15 -1.4 -3.2 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1627 -1.4 -4.1 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_5777 -1.4 -3.8 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_5962 -1.3 -4.2 hypothetical protein compare
Pf1N1B4_3907 -1.3 -2.6 FIG00953287: hypothetical protein compare
Pf1N1B4_5746 -1.3 -4.5 FIG139552: Putative protease compare
Pf1N1B4_1626 -1.3 -6.3 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4403 -1.3 -3.1 NADH dehydrogenase (EC 1.6.99.3) compare
Pf1N1B4_2651 -1.3 -3.2 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_875 -1.3 -0.9 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_5030 -1.3 -3.3 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_2338 -1.3 -5.5 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_2322 -1.3 -2.0 FIG015547: peptidase, M16 family compare
Pf1N1B4_5665 -1.3 -4.3 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_3830 -1.2 -2.7 CrfX protein compare
Pf1N1B4_899 -1.2 -2.0 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_4582 -1.2 -2.1 hypothetical protein compare
Pf1N1B4_1749 -1.2 -3.3 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_5734 -1.2 -4.6 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_1725 -1.2 -8.6 Sulfate transport system permease protein CysW compare
Pf1N1B4_3849 -1.2 -3.1 Transcriptional regulator, GntR family compare
Pf1N1B4_3168 -1.2 -2.6 AmpG permease compare
Pf1N1B4_1590 -1.2 -4.5 Histidine utilization repressor compare
Pf1N1B4_1533 -1.2 -6.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_3506 -1.2 -4.7 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_4317 -1.2 -1.7 DNA/RNA non-specific endonuclease compare
Pf1N1B4_12 -1.2 -5.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2549 -1.2 -6.0 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_2272 -1.2 -3.4 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_5756 -1.2 -3.4 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_10 -1.2 -2.5 Aspartate-semialdehyde dehydrogenase (EC 1.2.1.11) compare
Pf1N1B4_2536 -1.2 -6.5 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_4256 -1.1 -2.2 Probable transmembrane protein compare
Pf1N1B4_5751 -1.1 -4.2 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_847 -1.1 -5.3 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1408 -1.1 -4.0 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_3091 -1.1 -2.4 Membrane-associated zinc metalloprotease compare
Pf1N1B4_5720 -1.1 -2.2 hypothetical protein compare
Pf1N1B4_3119 -1.1 -2.4 Holin compare
Pf1N1B4_1624 -1.1 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_262 -1.1 -9.5 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_196 -1.1 -4.1 FIG137594: Putative iron-regulated membrane protein compare
Pf1N1B4_5090 -1.1 -2.1 glycosyl transferase, family 2 compare
Pf1N1B4_5749 -1.1 -3.2 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_3636 -1.1 -1.3 FIG00953562: hypothetical protein compare
Pf1N1B4_5736 -1.1 -4.0 Nitrate/nitrite transporter compare
Pf1N1B4_2958 -1.1 -1.8 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_3868 -1.1 -2.5 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_2695 -1.1 -1.4 Rare lipoprotein A precursor compare
Pf1N1B4_5610 -1.0 -2.8 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
Pf1N1B4_1726 -1.0 -5.1 Sulfate transport system permease protein CysT compare
Pf1N1B4_4857 -1.0 -3.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_4055 -1.0 -4.1 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_5666 -1.0 -2.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2548 -1.0 -3.4 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_3353 -1.0 -3.5 putative cytoplasmic protein compare
Pf1N1B4_4234 -1.0 -4.2 putative transport protein compare
Pf1N1B4_5620 -1.0 -3.1 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_5255 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_4065 -1.0 -3.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_27 -1.0 -2.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_777 -1.0 -6.8 Membrane protein glpM compare
Pf1N1B4_4433 -1.0 -2.1 FIG035246: DoxX family protein compare
Pf1N1B4_629 -1.0 -1.9 Queuosine Biosynthesis QueE Radical SAM compare
Pf1N1B4_5760 -1.0 -2.9 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_4377 -1.0 -3.3 Cell wall hydrolyses involved in spore germination compare
Pf1N1B4_2874 -1.0 -1.8 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_770 -1.0 -3.5 hypothetical protein compare
Pf1N1B4_5511 -1.0 -1.5 hypothetical protein compare
Pf1N1B4_2184 -1.0 -4.4 Autolysis response regulater LytR compare
Pf1N1B4_3766 -1.0 -4.2 Uricase (urate oxidase) (EC 1.7.3.3) compare
Pf1N1B4_1831 -1.0 -4.5 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_1411 -1.0 -2.7 GTP-binding protein HflX compare
Pf1N1B4_4476 -1.0 -2.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_5057 -1.0 -3.5 mandelate racemase family protein Pfl_3283 compare
Pf1N1B4_2936 -0.9 -6.4 Putative sulfate permease conserved
Pf1N1B4_4814 -0.9 -1.7 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_2112 -0.9 -6.2 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_106 -0.9 -2.0 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_3038 -0.9 -1.8 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_2303 -0.9 -5.8 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_5045 -0.9 -1.6 Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone compare
Pf1N1B4_237 -0.9 -1.7 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_1081 -0.9 -2.3 Ribosome hibernation protein YhbH compare
Pf1N1B4_1792 -0.9 -1.8 Taurine transport ATP-binding protein TauB compare
Pf1N1B4_3729 -0.9 -2.8 Quaternary ammonium compound-resistance protein SugE compare
Pf1N1B4_4783 -0.9 -3.3 Transcriptional regulator, AraC family compare
Pf1N1B4_4470 -0.9 -2.1 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_267 -0.9 -1.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_5483 -0.9 -2.8 hypothetical protein compare
Pf1N1B4_3843 -0.9 -1.4 Ribosome modulation factor compare
Pf1N1B4_1110 -0.9 -4.0 5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) (from data) compare
Pf1N1B4_5759 -0.9 -2.8 Nitric-oxide reductase subunit B (EC 1.7.99.7) compare
Pf1N1B4_4473 -0.9 -1.6 Homoserine/homoserine lactone efflux protein compare
Pf1N1B4_3831 -0.9 -3.8 CmpX compare
Pf1N1B4_1328 -0.9 -1.7 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_3697 -0.9 -5.0 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_32 -0.9 -2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_2335 -0.9 -2.4 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_1724 -0.9 -2.5 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_2547 -0.8 -1.5 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_1637 -0.8 -1.3 FIG00954739: hypothetical protein compare
Pf1N1B4_2225 -0.8 -5.8 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_3609 -0.8 -2.2 Anti-sigma F factor antagonist (spoIIAA-2); Anti-sigma B factor antagonist RsbV compare
Pf1N1B4_4667 -0.8 -2.0 Acriflavin resistance plasma membrane protein compare
Pf1N1B4_4617 -0.8 -3.6 hypothetical protein compare
Pf1N1B4_3281 -0.8 -3.3 AidA compare
Pf1N1B4_761 -0.8 -2.6 FIG00954879: hypothetical protein compare
Pf1N1B4_1135 -0.8 -2.3 FIG00960055: hypothetical protein compare
Pf1N1B4_138 -0.8 -2.0 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_5269 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_4030 -0.8 -1.1 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) compare
Pf1N1B4_1313 -0.8 -5.5 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf1N1B4_2807 -0.8 -1.5 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_756 -0.8 -0.9 hypothetical protein compare
Pf1N1B4_2784 -0.8 -0.9 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4678 -0.8 -1.5 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_337 -0.8 -3.4 O-antigen export system permease protein RfbD compare
Pf1N1B4_539 -0.8 -1.5 Transcriptional regulators compare
Pf1N1B4_219 -0.8 -2.2 Acyclic terpenes utilization regulator AtuR, TetR family compare
Pf1N1B4_1358 -0.8 -2.5 DnaJ-class molecular chaperone CbpA compare
Pf1N1B4_1057 -0.8 -1.0 Sulfate adenylyltransferase subunit 1 (EC 2.7.7.4) / Adenylylsulfate kinase (EC 2.7.1.25) compare
Pf1N1B4_1059 -0.8 -1.7 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_5781 -0.8 -4.1 Nitrous-oxide reductase (EC 1.7.99.6) compare
Pf1N1B4_786 -0.8 -3.1 L-lysine permease compare
Pf1N1B4_4636 -0.8 -1.6 TPR domain protein in aerotolerance operon compare
Pf1N1B4_5782 -0.8 -3.7 Nitrous oxide reductase maturation protein NosR compare
Pf1N1B4_3918 -0.8 -2.8 Thiamin biosynthesis lipoprotein ApbE compare
Pf1N1B4_2281 -0.8 -3.1 Predicted integral membrane protein compare
Pf1N1B4_1234 -0.8 -0.9 Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) compare
Pf1N1B4_3583 -0.8 -3.3 Cephalosporin hydroxylase compare
Pf1N1B4_1703 -0.8 -1.8 Methionine ABC transporter permease protein compare
Pf1N1B4_1936 -0.8 -2.7 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_4462 -0.8 -1.7 LysR family transcriptional regulator YbhD compare
Pf1N1B4_2337 -0.8 -3.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_1570 -0.8 -1.2 Ribosomal RNA small subunit methyltransferase E (EC 2.1.1.-) compare
Pf1N1B4_1147 -0.8 -4.5 Fructose repressor FruR, LacI family compare
Pf1N1B4_1469 -0.8 -6.3 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_4041 -0.8 -1.3 NADH ubiquinone oxidoreductase chain A (EC 1.6.5.3) compare
Pf1N1B4_5567 -0.8 -3.8 transcriptional regulator MvaT, P16 subunit, putative compare
Pf1N1B4_1916 -0.8 -1.3 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_3925 -0.8 -4.2 Putative protease compare
Pf1N1B4_662 -0.7 -2.9 FIG00955875: hypothetical protein compare
Pf1N1B4_2282 -0.7 -3.8 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_1781 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_2748 -0.7 -4.4 Transcriptional regulator, TetR family compare
Pf1N1B4_733 -0.7 -0.5 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_3492 -0.7 -2.4 DNA-3-methyladenine glycosylase (EC 3.2.2.20) compare
Pf1N1B4_4299 -0.7 -1.5 sensor histidine kinase compare
Pf1N1B4_257 -0.7 -3.0 sensor histidine kinase/response regulator compare
Pf1N1B4_339 -0.7 -0.9 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_4076 -0.7 -2.1 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_2773 -0.7 -2.0 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_3889 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_1535 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_338 -0.7 -1.9 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_3965 -0.7 -0.7 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_4522 -0.7 -2.1 4-carboxymuconolactone decarboxylase domain/alkylhydroperoxidase AhpD family core domain protein compare
Pf1N1B4_5937 -0.7 -2.7 dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13) compare
Pf1N1B4_5340 -0.7 -2.0 hypothetical protein compare
Pf1N1B4_4739 -0.7 -2.9 Ribosyl nicotinamide transporter, PnuC-like compare
Pf1N1B4_4853 -0.7 -1.0 Glycosyltransferase compare
Pf1N1B4_2273 -0.7 -2.8 hypothetical protein compare
Pf1N1B4_4489 -0.7 -2.4 Transcriptional regulator, LuxR family compare
Pf1N1B4_2783 -0.7 -1.1 Transcription elongation factor GreB-related protein compare
Pf1N1B4_2867 -0.7 -2.7 Hemin ABC transporter, permease protein compare
Pf1N1B4_1211 -0.7 -3.1 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_3936 -0.7 -2.0 Transcriptional regulator, LysR family compare
Pf1N1B4_4518 -0.7 -2.2 Possible pyrimidine permease in reductive pathway compare
Pf1N1B4_2733 -0.7 -1.6 DNA polymerase III alpha subunit (EC 2.7.7.7) compare
Pf1N1B4_5780 -0.7 -3.1 Nitrous oxide reductase maturation protein NosD compare
Pf1N1B4_3546 -0.7 -1.1 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_5576 -0.7 -0.9 hypothetical protein compare
Pf1N1B4_3510 -0.7 -2.8 nucleoprotein/polynucleotide-associated enzyme compare
Pf1N1B4_97 -0.7 -3.5 Selenide,water dikinase (EC 2.7.9.3) compare
Pf1N1B4_4839 -0.7 -2.6 lipoprotein compare


Specific Phenotypes

For 4 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For denitrifying Sodium pyruvate across organisms