Experiment set8IT054 for Phaeobacter inhibens DSM 17395

Compare to:

L-Methionine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PGA1_c07110 +1.6 10.4 putative sodium/alanine symporter compare
PGA1_c07120 +1.5 6.3 putative universal stress protein compare
PGA1_c27900 +1.3 5.2 ligand-binding UTRA domain-containing protein compare
PGA1_c01200 +1.2 7.3 putative phosphocarrier, HPr family compare
PGA1_c07130 +1.1 8.3 putative leucine-responsive regulatory protein compare
PGA1_c29320 +0.9 3.7 putative endoribonuclease L-PSP compare
PGA1_65p00280 +0.8 2.4 Protein of unknown function (DUF2793)./Domain of unknown function (DUF3476). compare
PGA1_c23500 +0.8 6.9 phosphoenolpyruvate-protein phosphotransferase PtsP compare
PGA1_c29060 +0.8 1.1 HTH-type transcriptional regulator PecS compare
PGA1_c11620 +0.8 3.4 Uncharacterized conserved protein compare
PGA1_c33870 +0.8 5.4 putative HTH-type transcriptional regulator GntR compare
PGA1_c23000 +0.7 1.9 hypothetical protein compare
PGA1_65p00180 +0.7 2.3 putative sugar transferase compare
PGA1_c14700 +0.7 3.3 hypothetical protein compare
PGA1_c13370 +0.7 1.2 Methionine synthase component, methyltransferase domain (EC:2.1.1.13) (from data) compare
PGA1_c19050 +0.7 2.3 hypothetical protein compare
PGA1_c36300 +0.7 4.3 HTH-type transcriptional regulator, GntR family compare
PGA1_c03880 +0.6 5.8 putative transcriptional activator protein RaiR compare
PGA1_c05490 +0.6 2.5 ureidoglycolate hydrolase AllA compare
PGA1_c01160 +0.6 5.3 sensor protein ChvG compare
PGA1_262p01510 +0.6 1.9 sarcosine oxidase, delta subunit compare
PGA1_c07720 +0.6 2.8 universal stress protein compare
PGA1_c15240 +0.6 4.7 two-component system histidine kinase / response regulator compare
PGA1_c04790 +0.6 4.3 Clp protease. compare
PGA1_65p00350 +0.6 3.9 hemolysin-like protein compare
PGA1_c19910 +0.6 2.0 Protein of unknown function (DUF1499). compare
PGA1_262p00770 +0.6 1.9 putative lytic murein transglycosylase compare
PGA1_c06280 +0.6 1.2 cytochrome c oxidase assembly protein CtaG compare
PGA1_c15530 +0.6 2.4 Uncharacterized protein conserved in bacteria compare
PGA1_c17170 +0.6 2.2 hypothetical protein compare
PGA1_c09900 +0.6 3.6 malate synthase GlcB compare
PGA1_c32930 +0.5 1.1 ribosome-binding factor A compare
PGA1_c34690 +0.5 3.2 putative HTH-type transcriptional regulator, MarR family compare
PGA1_c16110 +0.5 2.3 putative ion channel compare
PGA1_c11810 +0.5 0.8 hypothetical protein compare
PGA1_c29020 +0.5 2.5 hypothetical protein compare
PGA1_c33200 +0.5 3.3 putative serine-protein kinase (anti-sigma-B factor) compare
PGA1_c20230 +0.5 3.4 hypothetical protein compare
PGA1_c17200 +0.5 2.1 transcriptional regulator, TetR family compare
PGA1_c14720 +0.5 1.3 Oligoketide cyclase/lipid transport protein compare
PGA1_c20500 +0.5 2.9 leucine dehydrogenase Ldh compare
PGA1_c32660 +0.5 1.8 WGR domain. compare
PGA1_c08450 +0.5 1.6 Predicted membrane protein (DUF2061). compare
PGA1_c22240 +0.5 1.2 hypothetical protein compare
PGA1_c36290 +0.5 3.5 putative phenylserine dehydratase compare
PGA1_c01790 +0.5 1.6 hypothetical protein compare
PGA1_c01940 +0.5 2.0 crcB-like protein compare
PGA1_c14360 +0.5 3.4 cell cycle response regulator compare
PGA1_c07510 +0.5 3.8 DNA/RNA helicase-like protein compare
PGA1_c15590 +0.5 4.2 putative transcriptional activator protein compare
PGA1_262p01410 +0.5 1.5 malate/L-lactate dehydrogenase-like protein compare
PGA1_c19740 +0.5 1.9 hypothetical protein compare
PGA1_c10200 +0.5 1.2 molybdenum cofactor biosynthesis protein A compare
PGA1_c16600 +0.5 3.6 methionine gamma-lyase MdeA compare
PGA1_262p00490 +0.4 1.2 hypothetical protein compare
PGA1_c03560 +0.4 3.2 Predicted membrane protein compare
PGA1_c02030 +0.4 1.3 phosphoglycerate mutase-like protein compare
PGA1_262p01490 +0.4 1.6 putative sarcosine oxidase, gamma subunit compare
PGA1_262p01270 +0.4 1.7 Uncharacterized conserved protein compare
PGA1_c16830 +0.4 1.9 xanthine phosphoribosyltransferase Gpt compare
PGA1_c03290 +0.4 1.3 transcription elongation factor GreA compare
PGA1_c14920 +0.4 2.8 transcription-repair-coupling factor Mfd compare
PGA1_262p02000 +0.4 2.1 putative transcriptional regulator, LysR type compare
PGA1_c11610 +0.4 1.9 Uncharacterized protein conserved in bacteria compare
PGA1_c20300 +0.4 3.0 aminotransferase compare
PGA1_c12400 +0.4 2.3 ccdA-like protein SoxV compare
PGA1_c30230 +0.4 3.4 2',3'-cyclic-nucleotide 2'-phosphodiesterase CpdB compare
PGA1_c08690 +0.4 1.8 hypothetical protein compare
PGA1_c05190 +0.4 2.9 ABC transporter, inner membrane component compare
PGA1_c16610 +0.4 3.0 putative transcriptional regulator, AsnC family compare
PGA1_262p01165 +0.4 1.3 hypothetical protein compare
PGA1_262p00960 +0.4 3.8 Prephenate dehydratase. compare
PGA1_c31930 +0.4 3.2 putative transporter, MFS family compare
PGA1_262p01600 +0.4 1.0 putative ABC transporter, ATP binding protein compare
PGA1_c17660 +0.4 1.5 hypothetical protein compare
PGA1_c19400 +0.4 2.9 putative leucine-responsive regulatory protein compare
PGA1_c14140 +0.4 1.3 hypothetical protein compare
PGA1_c06630 +0.4 1.0 hypothetical protein compare
PGA1_c28600 +0.4 1.2 tRNA-Met compare
PGA1_c28360 +0.4 2.5 Putative amidoligase enzyme. compare
PGA1_c22860 +0.4 1.3 hypothetical protein compare
PGA1_c34480 +0.4 1.1 UTP--glucose-1-phosphate uridylyltransferase CelA compare
PGA1_c05200 +0.4 2.5 putative ABC transporter, inner membrane component compare
PGA1_c13460 +0.4 1.8 putative sulfurtransferase compare
PGA1_c03530 +0.4 1.5 pyridoxamine 5'-phosphate oxidase-like protein compare
PGA1_c27110 +0.4 1.7 Protein of unknown function (DUF1328). compare
PGA1_c07650 +0.4 2.5 hypothetical protein compare
PGA1_c04240 +0.4 1.6 protein PhnG compare
PGA1_c15290 +0.4 0.7 Lactoylglutathione lyase and related lyases compare
PGA1_c33610 +0.4 2.2 hypothetical protein compare
PGA1_c12300 +0.4 2.5 glucans biosynthesis glucosyltransferase H compare
PGA1_c00680 +0.4 1.1 transcriptional regulator, arsR family compare
PGA1_c07700 +0.4 2.0 putative sulfopyruvate decarboxylase subunit beta compare
PGA1_c07060 +0.4 1.6 YtoQ family protein compare
PGA1_c17700 +0.4 1.1 hypothetical protein compare
PGA1_c02900 +0.3 0.7 putative molybdopterin-converting factor subunit 1 compare
PGA1_c07350 +0.3 1.4 2-dehydro-3-deoxy-6-phosphogalactonate aldolase DgoA compare
PGA1_c26720 +0.3 1.6 Predicted endonuclease distantly related to archaeal Holliday junction resolvase compare
PGA1_78p00030 +0.3 0.9 putative multicopper oxidase compare
PGA1_c24680 +0.3 2.1 glyoxylate reductase GyaR compare
PGA1_c05180 +0.3 1.5 Predicted small integral membrane protein compare
PGA1_c21270 +0.3 2.0 hypothetical protein compare
PGA1_c02120 +0.3 2.1 hypothetical protein compare
PGA1_c10800 +0.3 1.4 Uncharacterized protein conserved in bacteria (DUF2199). compare
PGA1_c36440 +0.3 1.6 Domain of unknown function (DU1801). compare
PGA1_c25190 +0.3 2.2 hypothetical protein compare
PGA1_c13220 +0.3 2.3 putative transcriptional regulator, lacI family compare
PGA1_c08210 +0.3 2.0 Predicted enzyme related to lactoylglutathione lyase compare
PGA1_c02580 +0.3 2.0 putative HTH-type transcriptional regulator pcaQ compare
PGA1_c15310 +0.3 1.4 multidrug transporter EmrE compare
PGA1_c35740 +0.3 1.7 hypothetical protein compare
PGA1_c21640 +0.3 1.2 hypothetical protein compare
PGA1_c12920 +0.3 0.9 nitrilotriacetate monooxygenase component B-like protein compare
PGA1_c14190 +0.3 2.1 putative transcriptional regulator, AraC family compare
PGA1_65p00430 +0.3 1.4 putative glycosyl transferase compare
PGA1_c23420 +0.3 2.8 Domain of unknown function. compare
PGA1_c13610 +0.3 0.7 ABC-type transport system, involved in lipoprotein release, permease component compare
PGA1_c01990 +0.3 2.3 glutamate/glutamine/aspartate/asparagine transport system permease protein BztB compare
PGA1_c11740 +0.3 1.9 rhomboid protein-like protein compare
PGA1_c24310 +0.3 1.6 putative capsular polysaccharide transport system, ATP-binding protein compare
PGA1_c15100 +0.3 1.4 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ compare
PGA1_c26390 +0.3 2.3 ABC transporter, permease protein compare
PGA1_c04110 +0.3 2.1 putative fatty acid oxidation complex subunit alpha compare
PGA1_c24690 +0.3 1.9 protein CsaA-like protein compare
PGA1_c10060 +0.3 1.2 putative transcriptional regulator, MerR family compare
PGA1_c08250 +0.3 0.8 putative glycerol-3-phosphate regulon repressor glpR compare
PGA1_c10290 +0.3 1.6 outer membrane protein compare
PGA1_c17500 +0.3 1.5 Protein of unknown function (DUF3179). compare
PGA1_c27830 +0.3 1.9 hypothetical protein compare
PGA1_262p00390 +0.3 1.9 aldose 1-epimerase compare
PGA1_c31440 +0.3 2.2 branched-chain amino acid transport system permease protein compare
PGA1_c04050 +0.3 2.0 phenylacetic acid degradation protein PaaD compare
PGA1_c08490 +0.3 0.9 Uncharacterized protein conserved in bacteria compare
PGA1_c32560 +0.3 1.7 high-affinity branched-chain amino acid transport ATP-binding protein compare
PGA1_c05520 +0.3 1.2 hypothetical protein compare
PGA1_c04920 +0.3 1.7 l-lactate dehydrogenase IldD compare
PGA1_c25060 +0.3 1.6 putative glutathione-dependent formaldehyde-activating enzyme, GFA compare
PGA1_c30510 +0.3 1.7 putative leucine-responsive regulatory protein compare
PGA1_65p00150 +0.3 0.9 Protein of unknown function (DUF2886). compare
PGA1_262p01040 +0.3 1.4 periplasmic dipeptide transport protein precursor (dipeptide-binding protein) (DBP) compare
PGA1_c25710 +0.3 2.2 putative N-methylproline demethylase StcD compare
PGA1_c03300 +0.3 1.7 glyoxalase/bleomycin resistance protein domain-containing protein compare
PGA1_c14030 +0.3 0.7 Uncharacterized MobA-related protein compare
PGA1_c08890 +0.3 1.2 putative capsule polysaccharide export outer membrane protein compare
PGA1_c19030 +0.3 2.1 putative efflux transporter, RND family, MFP subunit compare
PGA1_c07465 +0.3 1.5 putative dksA/traR C4-type zinc finger protein compare
PGA1_c23010 +0.3 1.4 hypothetical protein compare
PGA1_262p01290 +0.3 1.4 transcriptional regulator, AraC family compare
PGA1_c02010 +0.3 1.8 glutamate/glutamine/aspartate/asparagine transport ATP-binding protein BztD compare
PGA1_c22050 +0.3 2.0 Protein of unknown function (DUF2927). compare
PGA1_c05210 +0.3 2.0 sn-glycerol-3-phosphate import ATP-binding protein UgbC compare
PGA1_c09310 +0.3 1.6 transcription regulator, AraC family compare
PGA1_c02990 +0.3 1.4 hypothetical protein compare
PGA1_c25980 +0.3 2.3 ferrichrome-iron receptor compare
PGA1_c25180 +0.3 2.1 outer membrane protein-like protein compare
PGA1_c30100 +0.3 0.9 cytochrome c oxidase subunit 4 compare
PGA1_c15040 +0.3 1.2 Uncharacterized conserved protein compare
PGA1_c05730 +0.3 1.2 putative methylated-DNA--protein-cysteine methyltransferase compare
PGA1_262p00420 +0.3 1.6 Transcriptional regulator/sugar kinase compare
PGA1_262p00950 +0.3 1.3 thioesterase superfamily protein TdaD compare
PGA1_262p00990 +0.3 1.0 transcriptional regulator, LysR family compare
PGA1_c17020 +0.3 1.2 Protein of unknown function (DUF3154). compare
PGA1_c32670 +0.3 1.7 putative phosphoglycerate mutase family protein compare
PGA1_c27140 +0.3 1.9 putative N-formylglutamate amidohydrolase compare
PGA1_c33170 +0.3 1.4 putative sensor protein compare
PGA1_c09750 +0.3 1.6 Uncharacterized protein conserved in bacteria compare
PGA1_c19100 +0.3 0.6 hypothetical protein compare
PGA1_c18390 +0.3 1.2 hypothetical protein compare
PGA1_c19410 +0.3 2.3 transketolase-like protein compare
PGA1_c24460 +0.3 1.6 putative nitroreductase compare
PGA1_c11400 +0.3 1.1 ferric uptake regulation protein Fur compare
PGA1_c23670 +0.3 0.8 Putative peptidoglycan binding domain. compare
PGA1_c19090 +0.3 0.8 Protein required for attachment to host cells compare
PGA1_c16790 +0.3 1.0 putative cold shock protein compare
PGA1_c33190 +0.3 1.5 putative anti-sigma-B factor antagonist compare
PGA1_c15150 +0.3 1.6 protein Usg compare
PGA1_c21820 +0.3 1.1 5-formyltetrahydrofolate cycloligase-like protein compare
PGA1_c36380 +0.3 1.4 hypothetical protein compare
PGA1_c08990 +0.3 0.9 hypothetical protein compare
PGA1_c25590 +0.3 1.9 putative glycine betaine/L-proline transport system, ATP binding subunit compare
PGA1_c09210 +0.3 1.4 hypothetical protein compare
PGA1_c24360 +0.3 1.3 hypothetical protein compare
PGA1_c13530 +0.3 1.4 hypothetical protein compare
PGA1_c03250 +0.3 1.3 molybdopterin-guanine dinucleotide biosynthesis protein B compare
PGA1_c03690 +0.3 1.6 putative NnrU protein compare
PGA1_c32390 +0.3 1.4 Predicted membrane protein compare
PGA1_c16390 +0.3 1.1 ornithine cyclodeaminase ArcB compare
PGA1_c12320 +0.3 1.5 Uncharacterized protein conserved in bacteria compare
PGA1_c03920 +0.2 0.6 Putative transmembrane protein (Alph_Pro_TM). compare
PGA1_c20890 +0.2 1.4 Molybdopterin biosynthesis enzyme compare
PGA1_c21090 +0.2 1.6 putative nitrilotriacetate monooxygenase component B compare
PGA1_c13100 +0.2 1.3 aldo / keto reductase compare
PGA1_c13730 +0.2 1.7 3-oxoacyl-[acyl-carrier-protein] synthase III compare
PGA1_c27310 +0.2 1.1 SnoaL-like polyketide cyclase. compare
PGA1_c15460 +0.2 1.8 hypothetical protein compare
PGA1_c24850 +0.2 0.8 Uncharacterized conserved small protein containing a coiled-coil domain compare
PGA1_c07450 +0.2 1.6 putative NAD dependent epimerase/dehydratase compare
PGA1_c11460 +0.2 1.1 hypothetical protein compare
PGA1_c34670 +0.2 1.9 proline iminopeptidase Pip compare
PGA1_c30410 +0.2 0.6 HTH-type transcriptional regulator, AsnC family compare


Specific Phenotypes

For 3 genes in this experiment

For nitrogen source L-Methionine in Phaeobacter inhibens DSM 17395

For nitrogen source L-Methionine across organisms