Experiment set8IT053 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction, replicate C, timepoint 1

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1749 -2.4 -3.9 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_952 -2.2 -6.0 Cell division protein MraZ compare
Pf1N1B4_2048 -2.0 -3.9 hypothetical protein compare
Pf1N1B4_5763 -2.0 -1.6 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_5242 -1.9 -2.8 hypothetical protein compare
Pf1N1B4_1818 -1.9 -7.1 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_345 -1.7 -1.5 Integration host factor beta subunit compare
Pf1N1B4_5735 -1.7 -8.9 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_4458 -1.7 -2.5 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_1993 -1.6 -0.8 C4-type zinc finger protein, DksA/TraR family compare
Pf1N1B4_2176 -1.6 -3.0 Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly compare
Pf1N1B4_4476 -1.6 -3.5 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_3281 -1.6 -5.6 AidA compare
Pf1N1B4_5758 -1.5 -5.7 Nitric oxide reductase activation protein NorD conserved
Pf1N1B4_2940 -1.5 -5.0 hypothetical protein compare
Pf1N1B4_5751 -1.5 -3.3 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_5729 -1.5 -5.7 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_22 -1.5 -7.5 Transcriptional regulator, TetR family compare
Pf1N1B4_5756 -1.4 -3.1 Nitric oxide -responding transcriptional regulator Dnr (Crp/Fnr family) compare
Pf1N1B4_4822 -1.3 -3.7 Paraquat-inducible protein A compare
Pf1N1B4_1067 -1.3 -4.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_3907 -1.3 -2.1 FIG00953287: hypothetical protein compare
Pf1N1B4_2545 -1.3 -8.8 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_5371 -1.3 -1.3 hypothetical protein compare
Pf1N1B4_5665 -1.3 -4.1 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_1781 -1.3 -1.3 hypothetical protein compare
Pf1N1B4_322 -1.2 -2.5 nucleotide sugar epimerase/dehydratase WbpM compare
Pf1N1B4_5777 -1.2 -1.9 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_1534 -1.2 -9.7 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2880 -1.2 -7.5 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_5760 -1.2 -2.4 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_4834 -1.2 -4.5 Sensor histidine kinase compare
Pf1N1B4_3976 -1.2 -4.6 Transmembrane regulator protein PrtR compare
Pf1N1B4_5425 -1.2 -2.2 DNA-binding protein HU-beta compare
Pf1N1B4_3546 -1.2 -1.0 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_5312 -1.2 -4.4 Putative activity regulator of membrane protease YbbK compare
Pf1N1B4_5734 -1.2 -4.2 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_5745 -1.2 -1.8 FIG139928: Putative protease compare
Pf1N1B4_5666 -1.1 -1.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_3779 -1.1 -2.1 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_339 -1.1 -1.5 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_1627 -1.1 -3.8 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_742 -1.1 -5.5 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_3789 -1.1 -1.5 Superfamily II DNA/RNA helicases, SNF2 family compare
Pf1N1B4_5749 -1.1 -4.6 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_3583 -1.1 -3.6 Cephalosporin hydroxylase compare
Pf1N1B4_1636 -1.1 -0.8 FIG00954739: hypothetical protein compare
Pf1N1B4_2338 -1.1 -4.6 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_3775 -1.1 -2.1 FIG00956876: hypothetical protein compare
Pf1N1B4_4814 -1.0 -1.3 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_4027 -1.0 -2.0 hypothetical protein compare
Pf1N1B4_5030 -1.0 -3.0 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_1147 -1.0 -5.5 Fructose repressor FruR, LacI family compare
Pf1N1B4_5109 -1.0 -1.6 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases compare
Pf1N1B4_4567 -1.0 -4.5 tRNA-(ms[2]io[6]A)-hydroxylase (EC 1.-.-.-) compare
Pf1N1B4_1113 -1.0 -3.5 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_2112 -1.0 -6.2 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_5243 -1.0 -2.8 hypothetical protein compare
Pf1N1B4_1135 -1.0 -2.1 FIG00960055: hypothetical protein compare
Pf1N1B4_12 -1.0 -3.9 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_662 -1.0 -3.7 FIG00955875: hypothetical protein compare
Pf1N1B4_5738 -1.0 -3.7 Nitrate/nitrite transporter compare
Pf1N1B4_27 -1.0 -1.3 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_564 -1.0 -3.2 ABC-type phosphate/phosphonate transport system, periplasmic component compare
Pf1N1B4_4470 -1.0 -2.4 Cobalt-zinc-cadmium resistance protein CzcD compare
Pf1N1B4_2280 -1.0 -5.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_847 -1.0 -4.7 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_5029 -1.0 -2.1 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_2269 -1.0 -1.8 Purine nucleoside phosphorylase (EC 2.4.2.1) compare
Pf1N1B4_1593 -1.0 -2.3 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1533 -1.0 -4.4 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_787 -1.0 -2.2 Nudix hydrolase family protein PA3470 compare
Pf1N1B4_1837 -0.9 -0.8 Osmotically inducible protein C compare
Pf1N1B4_5746 -0.9 -3.1 FIG139552: Putative protease compare
Pf1N1B4_2339 -0.9 -1.3 COG1872 compare
Pf1N1B4_1340 -0.9 -1.7 ABC transporter (iron.B12.siderophore.hemin) , periplasmic substrate-binding component compare
Pf1N1B4_3918 -0.9 -3.5 Thiamin biosynthesis lipoprotein ApbE compare
Pf1N1B4_3506 -0.9 -4.1 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_1820 -0.9 -6.4 NAD(P) transhydrogenase subunit beta (EC 1.6.1.2) compare
Pf1N1B4_3690 -0.9 -3.3 FIG00956080: hypothetical protein compare
Pf1N1B4_2549 -0.9 -4.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_4295 -0.9 -2.1 FIG00954434: hypothetical protein compare
Pf1N1B4_1624 -0.9 -3.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_304 -0.9 -1.9 Deoxyribonuclease TatD compare
Pf1N1B4_2536 -0.9 -5.1 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_126 -0.9 -1.4 Pirin compare
Pf1N1B4_1626 -0.9 -3.9 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_4494 -0.9 -1.0 hypothetical protein compare
Pf1N1B4_1408 -0.9 -2.7 ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17) compare
Pf1N1B4_1334 -0.9 -1.3 FIG00955840: hypothetical protein compare
Pf1N1B4_196 -0.9 -2.9 FIG137594: Putative iron-regulated membrane protein compare
Pf1N1B4_5753 -0.9 -1.9 putative membrane protein compare
Pf1N1B4_1819 -0.9 -1.5 NAD(P) transhydrogenase alpha subunit (EC 1.6.1.2) compare
Pf1N1B4_284 -0.9 -6.9 Universal stress protein family compare
Pf1N1B4_1328 -0.9 -1.2 Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) compare
Pf1N1B4_3590 -0.9 -3.3 hypothetical protein compare
Pf1N1B4_5567 -0.9 -3.4 transcriptional regulator MvaT, P16 subunit, putative compare
Pf1N1B4_1153 -0.9 -1.7 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_4835 -0.9 -1.5 Carbon starvation protein A compare
Pf1N1B4_977 -0.9 -1.6 Molybdenum cofactor biosynthesis protein MoaC compare
Pf1N1B4_2272 -0.9 -2.3 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_5829 -0.9 -2.0 FIG005107: hypothetical protein compare
Pf1N1B4_6 -0.8 -2.6 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_5736 -0.8 -2.5 Nitrate/nitrite transporter compare
Pf1N1B4_15 -0.8 -1.8 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_2958 -0.8 -1.2 Medium-chain-fatty-acid--CoA ligase (EC 6.2.1.-) compare
Pf1N1B4_4857 -0.8 -2.6 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3965 -0.8 -0.9 FIG033889: YebC paralog in Betaproteobacteria compare
Pf1N1B4_3091 -0.8 -3.8 Membrane-associated zinc metalloprotease compare
Pf1N1B4_5293 -0.8 -1.5 hypothetical protein compare
Pf1N1B4_5747 -0.8 -2.7 Molybdopterin biosynthesis protein MoeA compare
Pf1N1B4_5962 -0.8 -2.7 hypothetical protein compare
Pf1N1B4_1434 -0.8 -3.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_4739 -0.8 -3.5 Ribosyl nicotinamide transporter, PnuC-like compare
Pf1N1B4_5781 -0.8 -4.0 Nitrous-oxide reductase (EC 1.7.99.6) compare
Pf1N1B4_582 -0.8 -2.6 FIG00959696: hypothetical protein compare
Pf1N1B4_1411 -0.8 -2.9 GTP-binding protein HflX compare
Pf1N1B4_4879 -0.8 -1.9 Chromosome segregation ATPases compare
Pf1N1B4_5311 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_5483 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_133 -0.8 -2.5 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis compare
Pf1N1B4_5031 -0.8 -2.3 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_2303 -0.8 -4.7 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2868 -0.8 -2.7 ABC-type hemin transport system, ATPase component compare
Pf1N1B4_606 -0.8 -1.9 Iron siderophore sensor protein compare
Pf1N1B4_4931 -0.8 -1.4 Glutarate-semialdehyde dehydrogenase (EC 1.2.1.20); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.79) compare
Pf1N1B4_2651 -0.8 -2.0 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_563 -0.8 -2.9 RNA polymerase sigma-70 factor compare
Pf1N1B4_4076 -0.8 -1.6 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_16 -0.8 -1.9 Cys regulon transcriptional activator CysB compare
Pf1N1B4_2195 -0.8 -1.0 Small-conductance mechanosensitive channel compare
Pf1N1B4_2635 -0.8 -1.0 hypothetical protein compare
Pf1N1B4_4462 -0.8 -1.3 LysR family transcriptional regulator YbhD compare
Pf1N1B4_262 -0.7 -6.3 Probable protease htpX homolog (EC 3.4.24.-) compare
Pf1N1B4_1535 -0.7 -2.2 hypothetical protein compare
Pf1N1B4_3038 -0.7 -2.2 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_1901 -0.7 -2.0 Putative NADH-flavin reductase compare
Pf1N1B4_5507 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_4953 -0.7 -1.6 Selenocysteine-specific translation elongation factor compare
Pf1N1B4_2464 -0.7 -2.0 Ribosomal protein S6 glutaminyl transferase compare
Pf1N1B4_4605 -0.7 -3.4 FIG00953564: hypothetical protein compare
Pf1N1B4_5780 -0.7 -3.0 Nitrous oxide reductase maturation protein NosD compare
Pf1N1B4_3831 -0.7 -2.5 CmpX compare
Pf1N1B4_2695 -0.7 -0.8 Rare lipoprotein A precursor compare
Pf1N1B4_4414 -0.7 -1.8 Bll6261 protein compare
Pf1N1B4_101 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_3636 -0.7 -0.9 FIG00953562: hypothetical protein compare
Pf1N1B4_5740 -0.7 -2.0 Nitrate/nitrite sensor protein (EC 2.7.3.-) compare
Pf1N1B4_4509 -0.7 -2.1 Aldose 1-epimerase compare
Pf1N1B4_3356 -0.7 -1.2 Cyclic nucleotide-binding protein compare
Pf1N1B4_4516 -0.7 -2.3 Pyridine nucleotide-disulphide oxidoreductase associated with reductive pyrimidine catabolism compare
Pf1N1B4_3980 -0.7 -1.9 Transcriptional regulator, HxlR family compare
Pf1N1B4_1262 -0.7 -2.7 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_4700 -0.7 -1.1 FIG00956898: hypothetical protein compare
Pf1N1B4_2828 -0.7 -2.0 FIG00953333: hypothetical protein compare
Pf1N1B4_1608 -0.7 -2.4 FIG00956533: hypothetical protein compare
Pf1N1B4_2807 -0.7 -1.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_1248 -0.7 -2.7 Probable short-chain dehydrogenase compare
Pf1N1B4_1936 -0.7 -1.8 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_4055 -0.7 -2.5 ATP-dependent Clp protease ATP-binding subunit ClpA compare
Pf1N1B4_5013 -0.7 -1.0 Cointegrate resolution protein T compare
Pf1N1B4_4803 -0.7 -2.4 ABC-type polar amino acid transport system protein, substrate-binding protein compare
Pf1N1B4_448 -0.7 -0.9 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_4952 -0.7 -1.6 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_5299 -0.7 -3.0 hypothetical protein compare
Pf1N1B4_4132 -0.7 -1.5 Mobile element protein compare
Pf1N1B4_2548 -0.7 -2.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_4657 -0.7 -1.9 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_4801 -0.7 -2.7 Polysaccharide deacetylase compare
Pf1N1B4_4659 -0.7 -1.2 Putative outer membrane lipoprotein compare
Pf1N1B4_4542 -0.7 -2.4 IcmF-related protein compare
Pf1N1B4_4376 -0.7 -2.7 probable transmembrane protein compare
Pf1N1B4_4299 -0.7 -0.9 sensor histidine kinase compare
Pf1N1B4_1725 -0.7 -4.8 Sulfate transport system permease protein CysW compare
Pf1N1B4_4540 -0.7 -1.8 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_2776 -0.7 -1.6 Transcriptional regulator, GntR family compare
Pf1N1B4_5365 -0.7 -1.2 hypothetical protein compare
Pf1N1B4_1294 -0.7 -1.2 VgrG protein compare
Pf1N1B4_3657 -0.7 -1.9 Pyruvate kinase (EC 2.7.1.40) compare
Pf1N1B4_106 -0.7 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_1313 -0.7 -3.8 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf1N1B4_4570 -0.7 -2.0 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_479 -0.7 -1.6 Butyryl-CoA dehydrogenase (EC 1.3.99.2) compare
Pf1N1B4_2773 -0.7 -1.9 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_786 -0.7 -2.3 L-lysine permease compare
Pf1N1B4_2791 -0.7 -1.7 Putative inner membrane protein (Fragment) compare
Pf1N1B4_693 -0.7 -2.5 ABC spermidine/putrescine transporter, inner membrane subunit compare
Pf1N1B4_2534 -0.7 -2.0 DnaJ-like protein DjlA compare
Pf1N1B4_620 -0.7 -1.9 Glycine cleavage system H protein compare
Pf1N1B4_3830 -0.6 -1.6 CrfX protein compare
Pf1N1B4_701 -0.6 -2.9 FIG00954094: hypothetical protein compare
Pf1N1B4_150 -0.6 -2.1 SyrP-like protein compare
Pf1N1B4_516 -0.6 -1.6 Sensor histidine kinase compare
Pf1N1B4_237 -0.6 -0.9 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_3547 -0.6 -1.1 DNA-binding response regulator compare
Pf1N1B4_5036 -0.6 -2.3 hypothetical protein compare
Pf1N1B4_4621 -0.6 -1.6 L-arabonate dehydratase (EC 4.2.1.25) compare
Pf1N1B4_1527 -0.6 -2.5 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_3975 -0.6 -1.7 Transcriptional regulator, IclR family compare
Pf1N1B4_5791 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For denitrifying Sodium pyruvate across organisms