Experiment set8IT052 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate A

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_6031 -1.8 -3.6 Ribokinase (EC 2.7.1.15) (from data) compare
Pf1N1B4_3445 -1.3 -3.1 Succinylarginine dihydrolase (EC 3.5.3.23) compare
Pf1N1B4_2783 -1.2 -1.4 Transcription elongation factor GreB-related protein compare
Pf1N1B4_5858 -1.2 -5.0 carboxyphosphonoenolpyruvate phosphonomutase, putative compare
Pf1N1B4_3588 -1.2 -2.2 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_5090 -1.2 -2.5 glycosyl transferase, family 2 compare
Pf1N1B4_240 -1.1 -2.7 Transcriptional regulators compare
Pf1N1B4_63 -1.1 -3.1 Phosphonoacetaldehyde phosphonohydrolase-related protein compare
Pf1N1B4_1330 -1.1 -2.8 hypothetical protein compare
Pf1N1B4_339 -1.1 -1.7 UDP-glucose 4-epimerase (EC 5.1.3.2) compare
Pf1N1B4_846 -1.1 -1.8 hypothetical protein compare
Pf1N1B4_2117 -1.0 -6.5 Ribonuclease PH (EC 2.7.7.56) compare
Pf1N1B4_5370 -1.0 -2.2 hypothetical protein compare
Pf1N1B4_2643 -1.0 -1.1 Predicted zinc-binding protein compare
Pf1N1B4_2948 -0.9 -3.4 FIG00954698: hypothetical protein compare
Pf1N1B4_5631 -0.9 -3.0 Sigma-54 dependent transcriptional regulator compare
Pf1N1B4_5299 -0.9 -3.1 hypothetical protein compare
Pf1N1B4_733 -0.9 -0.6 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_138 -0.9 -2.3 Putative dipeptidase, pyoverdin biosynthesis PvdM compare
Pf1N1B4_4318 -0.9 -2.3 hypothetical protein compare
Pf1N1B4_1346 -0.9 -2.5 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_3098 -0.9 -3.1 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_5077 -0.9 -3.0 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) compare
Pf1N1B4_1059 -0.9 -1.7 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_5342 -0.9 -0.9 hypothetical protein compare
Pf1N1B4_2006 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_4181 -0.9 -1.0 FIG00957123: hypothetical protein compare
Pf1N1B4_3405 -0.9 -3.3 Signal transduction histidine kinase compare
Pf1N1B4_241 -0.9 -1.5 Thiol-disulfide isomerase and thioredoxins compare
Pf1N1B4_2364 -0.8 -2.9 Malonate decarboxylase beta subunit compare
Pf1N1B4_5904 -0.8 -2.1 FIG00955320: hypothetical protein compare
Pf1N1B4_888 -0.8 -3.5 Transglycosylase, Slt family compare
Pf1N1B4_2411 -0.8 -1.5 FIG00953568: hypothetical protein compare
Pf1N1B4_5777 -0.8 -2.3 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_1679 -0.8 -1.7 Membrane-fusion protein compare
Pf1N1B4_4990 -0.8 -2.4 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_4429 -0.8 -1.4 No significant database matches compare
Pf1N1B4_4127 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_2507 -0.8 -2.6 hypothetical protein compare
Pf1N1B4_609 -0.8 -2.5 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_5496 -0.8 -2.7 hypothetical protein compare
Pf1N1B4_5722 -0.8 -1.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_4918 -0.8 -2.1 Predicted enzyme of the cupin superfamily compare
Pf1N1B4_2244 -0.8 -3.1 Taurine-binding periplasmic protein TauA compare
Pf1N1B4_358 -0.8 -3.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
Pf1N1B4_3356 -0.8 -2.3 Cyclic nucleotide-binding protein compare
Pf1N1B4_4700 -0.8 -2.5 FIG00956898: hypothetical protein compare
Pf1N1B4_3883 -0.8 -2.7 Cytochrome c oxidase subunit CcoO (EC 1.9.3.1) compare
Pf1N1B4_2761 -0.7 -3.9 putative Cytochrome bd2, subunit II compare
Pf1N1B4_4178 -0.7 -2.7 Cell division protein FtsH (EC 3.4.24.-) compare
Pf1N1B4_2026 -0.7 -1.5 Transcriptional regulator compare
Pf1N1B4_1975 -0.7 -1.8 Transcriptional regulator, AsnC family compare
Pf1N1B4_981 -0.7 -2.6 UPF0246 protein YaaA compare
Pf1N1B4_3526 -0.7 -2.2 Glutathione S-transferase (EC 2.5.1.18) compare
Pf1N1B4_1060 -0.7 -1.3 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_1140 -0.7 -2.4 Iron-uptake factor PiuC compare
Pf1N1B4_13 -0.7 -1.5 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_3591 -0.7 -3.1 3-oxoacyl-[acyl-carrier-protein] synthase, KASIII (EC 2.3.1.41) compare
Pf1N1B4_4433 -0.7 -2.0 FIG035246: DoxX family protein compare
Pf1N1B4_5512 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_4787 -0.7 -2.3 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) compare
Pf1N1B4_4017 -0.7 -1.9 DNA-binding heavy metal response regulator compare
Pf1N1B4_1528 -0.7 -1.1 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_5823 -0.7 -1.3 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_3546 -0.7 -1.1 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein compare
Pf1N1B4_5927 -0.7 -6.1 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_1011 -0.7 -3.0 ribosomal subunit interface protein, putative compare
Pf1N1B4_2706 -0.7 -0.5 FIG00954871: hypothetical protein compare
Pf1N1B4_1872 -0.7 -2.9 Zinc ABC transporter, periplasmic-binding protein ZnuA compare
Pf1N1B4_5089 -0.7 -1.2 Exopolysaccharide production protein ExoQ compare
Pf1N1B4_2335 -0.7 -1.9 Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific) (EC 3.6.1.15) compare
Pf1N1B4_5577 -0.7 -1.4 twitching motility protein PilG compare
Pf1N1B4_3909 -0.7 -0.8 Cell division inhibitor-related protein compare
Pf1N1B4_3142 -0.7 -1.3 C-terminal domain of CinA type S; Protein Implicated in DNA repair function with RecA and MutS compare
Pf1N1B4_3325 -0.7 -1.2 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_3821 -0.7 -1.3 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) compare
Pf1N1B4_1251 -0.7 -2.3 2-Oxobutyrate oxidase, putative compare
Pf1N1B4_3783 -0.7 -1.1 FIG00958237: hypothetical protein compare
Pf1N1B4_5135 -0.6 -2.3 Transcriptional regulator, TetR family compare
Pf1N1B4_4397 -0.6 -1.9 Succinylglutamate desuccinylase/aspartoacylase compare
Pf1N1B4_4392 -0.6 -2.0 MocE compare
Pf1N1B4_4936 -0.6 -2.3 hypothetical protein compare
Pf1N1B4_4803 -0.6 -3.3 ABC-type polar amino acid transport system protein, substrate-binding protein compare
Pf1N1B4_2458 -0.6 -1.6 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_5330 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_5268 -0.6 -3.6 hypothetical protein compare
Pf1N1B4_4257 -0.6 -1.2 L-serine dehydratase, (PLP)-dependent (EC 4.3.1.17) @ Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_691 -0.6 -1.1 Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) compare
Pf1N1B4_5243 -0.6 -1.4 hypothetical protein compare
Pf1N1B4_5433 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_2281 -0.6 -2.5 Predicted integral membrane protein compare
Pf1N1B4_3370 -0.6 -1.4 ATPase associated with various cellular activities, AAA_5 compare
Pf1N1B4_2727 -0.6 -1.4 Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) compare
Pf1N1B4_4929 -0.6 -0.7 Opine oxidase subunit B compare
Pf1N1B4_4427 -0.6 -2.9 Glutamate transport membrane-spanning protein compare
Pf1N1B4_5269 -0.6 -1.1 hypothetical protein compare
Pf1N1B4_4617 -0.6 -2.7 hypothetical protein compare
Pf1N1B4_867 -0.6 -1.3 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_2252 -0.6 -2.2 Organosulfonate utilization protein SsuF compare
Pf1N1B4_4432 -0.6 -3.1 Dienelactone hydrolase family compare
Pf1N1B4_3571 -0.6 -2.6 Flagellar P-ring protein FlgI compare
Pf1N1B4_5224 -0.6 -0.8 tRNA-Arg-CCT compare
Pf1N1B4_1527 -0.6 -1.8 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_6001 -0.6 -3.4 Transporter, MFS superfamily compare
Pf1N1B4_4051 -0.6 -0.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_4460 -0.6 -1.8 Cytochrome b561 compare
Pf1N1B4_1339 -0.6 -1.9 ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component compare
Pf1N1B4_4166 -0.6 -1.9 Transcriptional regulator, LysR family compare
Pf1N1B4_3800 -0.6 -1.3 Enoyl-CoA hydratase/isomerase family protein compare
Pf1N1B4_4455 -0.6 -1.7 FIG00953528: hypothetical protein compare
Pf1N1B4_3722 -0.6 -1.3 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_2709 -0.6 -1.7 Magnesium and cobalt efflux protein CorC compare
Pf1N1B4_3222 -0.6 -0.8 Ferredoxin compare
Pf1N1B4_314 -0.6 -2.8 Potassium-transporting ATPase B chain (EC 3.6.3.12) (TC 3.A.3.7.1) compare
Pf1N1B4_2939 -0.6 -1.2 Malate:quinone oxidoreductase (EC 1.1.5.4) compare
Pf1N1B4_2679 -0.6 -1.9 Nucleoside-diphosphate-sugar epimerases compare
Pf1N1B4_1906 -0.6 -1.6 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) compare
Pf1N1B4_3991 -0.6 -1.6 Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family compare
Pf1N1B4_3972 -0.6 -1.8 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_1891 -0.6 -1.4 ABC-type transport system involved in resistance to organic solvents, periplasmic component USSDB6C compare
Pf1N1B4_1441 -0.6 -3.7 Putative esterase, FIGfam005057 compare
Pf1N1B4_4453 -0.6 -2.8 Sensory histidine kinase QseC compare
Pf1N1B4_5690 -0.6 -2.0 Putative TEGT family carrier/transport protein compare
Pf1N1B4_4957 -0.6 -1.1 Transcriptional regulator, TetR family compare
Pf1N1B4_3382 -0.6 -2.7 4-hydroxythreonine-4-phosphate dehydrogenase (EC 1.1.1.262) compare
Pf1N1B4_1461 -0.6 -0.4 Protein fixF compare
Pf1N1B4_4659 -0.6 -1.4 Putative outer membrane lipoprotein compare
Pf1N1B4_4201 -0.6 -1.0 Transcriptional regulator, LysR family compare
Pf1N1B4_5501 -0.6 -2.0 hypothetical protein compare
Pf1N1B4_5762 -0.6 -1.7 Nitric oxide reductase activation protein NorE compare
Pf1N1B4_2083 -0.6 -1.5 Uncharacterized protein ImpB compare
Pf1N1B4_4303 -0.6 -2.5 DipZ protein compare
Pf1N1B4_3793 -0.6 -1.5 COG2010: Cytochrome c, mono- and diheme variants compare
Pf1N1B4_2036 -0.6 -1.3 Phosphate transport system permease protein PstA (TC 3.A.1.7.1) compare
Pf1N1B4_4102 -0.6 -1.9 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_5483 -0.6 -1.2 hypothetical protein compare
Pf1N1B4_4763 -0.6 -1.9 2-ketogluconate 6-phosphate reductase (EC 1.1.1.43) compare
Pf1N1B4_3580 -0.6 -2.5 methyltransferase, putative compare
Pf1N1B4_3498 -0.5 -2.0 FIG00953240: hypothetical protein compare
Pf1N1B4_1870 -0.5 -1.7 Zinc ABC transporter, ATP-binding protein ZnuC compare
Pf1N1B4_4328 -0.5 -2.3 Agmatine deiminase (EC 3.5.3.12) compare
Pf1N1B4_5340 -0.5 -1.5 hypothetical protein compare
Pf1N1B4_338 -0.5 -1.6 Alpha-L-Rha alpha-1,3-L-rhamnosyltransferase (EC 2.4.1.-) compare
Pf1N1B4_5437 -0.5 -2.4 hypothetical protein compare
Pf1N1B4_1312 -0.5 -1.7 hypothetical protein compare
Pf1N1B4_174 -0.5 -2.4 Lipid A export ATP-binding/permease protein MsbA compare
Pf1N1B4_3448 -0.5 -1.9 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.78) compare
Pf1N1B4_676 -0.5 -1.5 FIG00953991: hypothetical protein compare
Pf1N1B4_473 -0.5 -2.9 DNA internalization-related competence protein ComEC/Rec2 compare
Pf1N1B4_2479 -0.5 -1.3 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_5113 -0.5 -2.3 sucrose ABC transporter, permease component 1 (from data) compare
Pf1N1B4_1627 -0.5 -2.4 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_4035 -0.5 -1.3 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_1351 -0.5 -1.9 Tabtoxin resistance protein compare
Pf1N1B4_2731 -0.5 -1.8 Uncharacterized protein conserved in bacteria compare
Pf1N1B4_4506 -0.5 -1.3 Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) compare
Pf1N1B4_3390 -0.5 -1.8 RNA polymerase sigma factor RpoE compare
Pf1N1B4_1055 -0.5 -2.0 Phosphate acetyltransferase (EC 2.3.1.8) compare
Pf1N1B4_5995 -0.5 -2.3 Transporter, MFS superfamily compare
Pf1N1B4_430 -0.5 -1.5 hypothetical protein compare
Pf1N1B4_3590 -0.5 -1.7 hypothetical protein compare
Pf1N1B4_4054 -0.5 -3.3 ATP-dependent Clp protease adaptor protein ClpS compare
Pf1N1B4_1803 -0.5 -2.8 T1SS associated transglutaminase-like cysteine proteinase LapP compare
Pf1N1B4_228 -0.5 -1.5 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 compare
Pf1N1B4_4402 -0.5 -2.2 SoxH protein, homolog compare
Pf1N1B4_904 -0.5 -1.2 DNA-binding protein HU-beta compare
Pf1N1B4_2489 -0.5 -1.2 Biotin synthesis protein BioH compare
Pf1N1B4_1211 -0.5 -2.3 Hydrogen peroxide-inducible genes activator compare
Pf1N1B4_69 -0.5 -0.9 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_3362 -0.5 -0.9 Multidrug resistance protein B compare
Pf1N1B4_5242 -0.5 -0.7 hypothetical protein compare
Pf1N1B4_3025 -0.5 -1.5 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_3525 -0.5 -1.3 hydrolase, alpha/beta fold family compare
Pf1N1B4_2035 -0.5 -2.0 Phosphate transport system permease protein PstC (TC 3.A.1.7.1) compare
Pf1N1B4_32 -0.5 -1.8 Transcriptional regulator, TetR family compare
Pf1N1B4_429 -0.5 -1.4 FIG00964214: hypothetical protein compare
Pf1N1B4_1675 -0.5 -1.2 Transcriptional regulator compare
Pf1N1B4_135 -0.5 -2.1 Pyoverdine efflux carrier and ATP binding protein compare
Pf1N1B4_2054 -0.5 -1.6 FIG00964469: hypothetical protein compare
Pf1N1B4_5219 -0.5 -1.0 tRNA-Gly-CCC compare
Pf1N1B4_159 -0.5 -0.9 Putative threonine efflux protein compare
Pf1N1B4_3196 -0.5 -2.7 Esterase A compare
Pf1N1B4_3364 -0.5 -1.4 Cyn operon transcriptional activator compare
Pf1N1B4_5634 -0.5 -1.5 Acetoacetyl-CoA synthetase (EC 6.2.1.16) compare
Pf1N1B4_2801 -0.5 -2.3 Conserved uncharacterized protein CreA compare
Pf1N1B4_5684 -0.5 -2.0 Glyceraldehyde-3-phosphate dehydrogenase, putative compare
Pf1N1B4_1261 -0.5 -1.7 FIG00953575: hypothetical protein compare
Pf1N1B4_5407 -0.5 -2.3 hypothetical protein compare
Pf1N1B4_4613 -0.5 -2.4 FIG00953934: hypothetical protein compare
Pf1N1B4_2189 -0.5 -1.0 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_3130 -0.5 -0.9 Bacteriophage protein GP46 compare
Pf1N1B4_236 -0.5 -1.8 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_232 -0.5 -0.6 DNA-binding response regulator, LuxR family compare
Pf1N1B4_5456 -0.5 -2.2 hypothetical protein compare
Pf1N1B4_152 -0.5 -2.1 ABC transporter, permease protein compare
Pf1N1B4_4972 -0.5 -0.8 CELL PROCESSES; Adaptation; adaptations, atypical conditions compare
Pf1N1B4_5751 -0.5 -2.2 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_5514 -0.5 -2.5 RecA protein compare
Pf1N1B4_3881 -0.5 -2.6 Cytochrome c oxidase subunit CcoP (EC 1.9.3.1) compare
Pf1N1B4_3786 -0.5 -1.2 FIG00955145: hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For denitrifying Sodium pyruvate across organisms