Experiment set8IT052 for Caulobacter crescentus NA1000

Compare to:

48 hours of 100ug/mL streptomycin treatment after 3 hour phosphate starvation in M5G

200 most detrimental genes:

  gene name fitness t score description  
CCNA_03635 +1.2 3.5 hypothetical protein compare
CCNA_01851 +1.0 8.4 quinol cytochrome oxidase polypeptide II compare
CCNA_00147 +1.0 2.7 hypothetical protein compare
CCNA_01712 +1.0 7.9 CopY/TcrY family transcriptional repressor compare
CCNA_01780 +1.0 7.5 exopolyphosphatase compare
CCNA_01849 +1.0 5.9 quinol cytochrome oxidase polypeptide III compare
CCNA_02000 +1.0 2.1 SSU ribosomal protein S2P compare
CCNA_01848 +0.9 8.0 quinol cytochrome oxidase polypeptide IV compare
CCNA_02646 +0.9 2.2 cell division protein MraZ compare
CCNA_01850 +0.9 7.7 quinol cytochrome oxidase polypeptide I compare
CCNA_02063 +0.9 4.5 beta-barrel assembly machine (BAM) protein BamD compare
CCNA_01913 +0.9 6.2 MarR-family transcriptional regulator compare
CCNA_03913 +0.8 1.4 hypothetical protein compare
CCNA_03918 +0.8 1.8 hypothetical protein compare
CCNA_01801 +0.8 3.8 hypothetical protein compare
CCNA_00020 +0.8 2.4 hypothetical protein compare
CCNA_02534 +0.8 2.0 hypothetical protein compare
CCNA_02644 +0.8 2.2 cell division protein FtsL compare
CCNA_01526 +0.8 3.6 flagellar biosynthesis regulatory protein flaF compare
CCNA_01949 +0.8 3.7 bactofilin A BacA compare
CCNA_01393 +0.8 7.2 soluble lytic murein transglycosylase compare
CCNA_01840 +0.8 6.3 MerR-family transcriptional regulator compare
CCNA_01420 +0.8 3.8 NrdR family transcriptional regulator compare
CCNA_01979 +0.8 5.8 LexA repressor compare
CCNA_01181 +0.7 5.2 hypothetical protein compare
CCNA_02732 +0.7 4.9 hypothetical protein compare
CCNA_01059 +0.7 6.6 S-layer protein rsaA compare
CCNA_03951 +0.7 4.6 hypothetical protein compare
CCNA_03992 +0.7 1.1 UDP-glucose 6-dehydrogenase-related protein compare
CCNA_02760 +0.7 2.5 hypothetical protein compare
CCNA_02103 +0.7 5.6 hypothetical protein compare
CCNA_03964 +0.7 2.6 hypothetical protein compare
CCNA_01573 +0.7 4.2 ArsR-family transcriptional regulator compare
CCNA_01531 +0.7 5.3 acetyltransferase compare
CCNA_02010 +0.7 0.9 hypothetical protein compare
CCNA_01074 +0.7 3.2 entericidin B-like protein compare
CCNA_01333 +0.7 3.9 hypothetical protein compare
CCNA_00769 +0.7 4.7 TetR family transcriptional regulator compare
CCNA_03064 +0.7 4.3 PadR-family transcriptional regulator compare
CCNA_03643 +0.7 1.1 succinate dehydrogenase membrane anchor subunit compare
CCNA_01790 +0.6 3.0 protein translocase subunit secG compare
CCNA_00031 +0.6 4.5 toxin protein VapC compare
CCNA_01684 +0.6 4.2 phenylalanine-4-hydroxylase compare
CCNA_02036 +0.6 3.2 DNA-binding protein HU compare
CCNA_00807 +0.6 1.0 ribonuclease P protein component compare
CCNA_02330 +0.6 4.6 hypothetical protein compare
CCNA_02957 +0.6 2.9 ArsR-family transcriptional regulator compare
CCNA_00998 +0.6 4.0 ROS/MUCR transcriptional regulator compare
CCNA_03325 +0.6 3.6 hypothetical protein compare
CCNA_03944 +0.6 0.6 hypothetical protein compare
CCNA_02551 +0.6 3.6 hypothetical protein compare
CCNA_02387 +0.6 5.1 glutathione reductase compare
CCNA_01681 +0.6 3.4 RimI-like acetyltransferase compare
CCNA_01690 +0.6 1.9 MAPEG family membrane protein compare
CCNA_03952 +0.6 4.0 hypothetical protein compare
CCNA_03612 +0.6 3.6 HTH XRE-family transcriptional regulator compare
CCNA_03021 +0.6 2.5 hypothetical protein compare
CCNA_03070 +0.6 1.7 4-oxalocrotonate tautomerase compare
CCNA_01252 +0.6 5.6 soluble lytic murein transglycosylase compare
CCNA_02447 +0.6 5.2 PspA/IM30 family regulatory protein compare
CCNA_01413 +0.6 3.7 phosphoglycerate mutase family protein compare
CCNA_02249 +0.6 2.1 conserved hypothetical cytosolic protein compare
CCNA_02448 +0.6 5.1 hypothetical protein compare
CCNA_01847 +0.6 4.3 cytochrome c oxidase assembly protein Surf1 compare
CCNA_01931 +0.6 3.8 TetR-family transcriptional regulator compare
CCNA_02878 +0.6 1.0 hypothetical protein compare
CCNA_R0037 +0.6 2.6 tRNA-Glu compare
CCNA_01235 +0.6 4.4 AcrR-family transcriptional regulator compare
CCNA_01528 +0.6 4.3 flagellin fljK compare
CCNA_03622 +0.6 4.2 beta-lactamase repressor compare
CCNA_01008 +0.6 5.0 urocanate hydratase compare
CCNA_02728 +0.6 3.6 hypothetical protein compare
CCNA_01009 +0.6 4.2 N-formylglutamate deformylase compare
CCNA_00114 +0.6 2.9 MarR/EmrR-family transcriptional regulator compare
CCNA_01745 +0.6 3.4 thioredoxin peroxidase compare
CCNA_00153 +0.6 3.2 adenine nucleotide exchange factor GrpE compare
CCNA_01742 +0.6 2.8 hypothetical protein compare
CCNA_02324 +0.6 4.3 heat shock protein 33 hsp33 compare
CCNA_01963 +0.6 3.6 hypothetical protein compare
CCNA_01677 +0.6 3.4 carboxypeptidase G2 precursor compare
CCNA_01655 +0.6 4.0 cyclophilin-type peptidylprolyl cis-trans isomerase compare
CCNA_00919 +0.6 2.9 hypothetical protein compare
CCNA_03936 +0.6 2.9 hypothetical protein compare
CCNA_00939 +0.6 4.0 MarR-family transcriptional regulator compare
CCNA_03618 +0.6 4.2 SCO1/SenC family protein compare
CCNA_R0054 +0.6 1.9 tRNA-Gly compare
CCNA_01367 +0.6 4.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
CCNA_01923 +0.5 4.2 ATP-dependent RNA helicase compare
CCNA_02243 +0.5 5.1 D-alanyl-D-alanine serine-type carboxypeptidase compare
CCNA_01011 +0.5 3.6 imidazolonepropionase compare
CCNA_00790 +0.5 2.6 hypoxia negative feedback regulator FixT compare
CCNA_01072 +0.5 3.2 hypothetical protein compare
CCNA_01006 +0.5 3.4 flagellar hook-basal body complex protein FliE compare
CCNA_02004 +0.5 1.6 SOS-induced inhibitor of cell division SidA compare
CCNA_03252 +0.5 4.2 CopY/TcrY-family transcriptional regulator compare
CCNA_01339 +0.5 3.0 ArsR-family transcriptional regulator compare
CCNA_02272 +0.5 3.0 hypothetical protein compare
CCNA_01541 +0.5 4.1 LysR-family transcriptional regulator compare
CCNA_01501 +0.5 1.6 protein kinase C-like superfamily protein compare
CCNA_01412 +0.5 4.2 acyl-CoA dehydrogenase, short-chain specific compare
CCNA_02124 +0.5 3.2 hypothetical protein compare
CCNA_01405 +0.5 3.1 GIY-YIG domain protein compare
CCNA_01024 +0.5 4.2 hypothetical protein compare
CCNA_03281 +0.5 3.5 AsnC-family transcriptional regulator compare
CCNA_01580 +0.5 2.9 M15 superfamily membrane peptidase compare
CCNA_01005 +0.5 3.6 flagellar basal-body rod protein flgC compare
CCNA_00047 +0.5 3.7 tRNA m7-G46 methyltransferase compare
CCNA_03280 +0.5 4.9 pyruvate ferredoxin/flavodoxin oxidoreductase family protein compare
CCNA_02580 +0.5 1.8 rubredoxin compare
CCNA_03123 +0.5 4.0 ArsR-family transcriptional regulator compare
CCNA_01406 +0.5 3.7 metal-dependent hydrolase compare
CCNA_01820 +0.5 3.8 GTP-binding protein hflX compare
CCNA_03039 +0.5 3.5 pilus assembly protein CpaD compare
CCNA_00053 +0.5 3.8 phosphate starvation-inducible protein PhoH compare
CCNA_01914 +0.5 3.8 16S rRNA m(2)G 1207 methyltransferase RsmC compare
CCNA_00999 +0.5 2.6 PAS-family motility and cell cycle regulatory protein MopJ compare
CCNA_01748 +0.5 3.7 methyltransferase compare
CCNA_01007 +0.5 2.9 hypothetical protein compare
CCNA_01445 +0.5 2.4 hypothetical protein compare
CCNA_01933 +0.5 2.1 hypothetical protein compare
CCNA_01680 +0.5 3.7 succinylarginine dihydrolase compare
CCNA_01679 +0.5 3.9 succinylglutamic semialdehyde dehydrogenase compare
CCNA_00162 +0.5 2.5 hypothetical protein compare
CCNA_01013 +0.5 2.9 histidine utilization repressor compare
CCNA_03616 +0.5 4.4 PiuB-related membrane protein compare
CCNA_01415 +0.5 4.0 methyltransferase compare
CCNA_02339 +0.5 4.1 methyltransferase compare
CCNA_02334 +0.5 3.6 transcriptional regulator of stalk biogenesis staR compare
CCNA_01818 +0.5 2.8 D-alanine aminotransferase compare
CCNA_02040 +0.5 1.4 phosphoserine phosphatase compare
CCNA_00860 +0.5 2.4 holdfast inhibitor protein HfiA compare
CCNA_03583 +0.5 2.5 hypothetical protein compare
CCNA_01804 +0.5 2.9 glutathione peroxidase compare
CCNA_03954 +0.5 1.0 hypothetical protein compare
CCNA_01977 +0.5 1.3 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
CCNA_00352 +0.5 3.9 integral membrane protein compare
CCNA_01767 +0.5 2.2 cytochrome C family protein compare
CCNA_03321 +0.5 3.1 VanZ superfamily protein compare
CCNA_03632 +0.5 2.1 hypothetical protein compare
CCNA_01926 +0.5 3.2 GGDEF diguanylate cyclase DgcB compare
CCNA_02297 +0.5 3.0 hypoxanthine-guanine phosphoribosyltransferase compare
CCNA_03601 +0.5 3.8 hemolysin III-related membrane protein compare
CCNA_01338 +0.5 2.8 glyoxalase family protein compare
CCNA_01014 +0.5 2.8 cysteinyl-tRNA(Pro) deacylase compare
CCNA_01694 +0.5 3.4 CocE/NonD family hydrolase compare
CCNA_02067 +0.5 2.8 conserved membrane spanning protein compare
CCNA_03518 +0.5 3.6 cytochrome c oxidase polypeptide II coxB compare
CCNA_00705 +0.5 2.6 hypothetical protein compare
CCNA_03912 +0.5 3.0 hypothetical protein compare
CCNA_01414 +0.5 3.5 3-hydroxyisobutyryl-CoA hydrolase compare
CCNA_00527 +0.5 3.3 hypothetical protein compare
CCNA_02467 +0.5 3.6 polyisoprenylphosphate hexose-1-phosphotransferase pssZ compare
CCNA_03479 +0.5 3.2 MarR-family transcriptional regulator compare
CCNA_01779 +0.5 2.2 hypothetical protein compare
CCNA_00326 +0.5 3.9 vegetatible incompatibility protein HET-E-1 compare
CCNA_03938 +0.5 3.1 hypothetical protein compare
CCNA_00440 +0.5 2.4 STAS domain protein compare
CCNA_01939 +0.5 1.6 ADP-ribosylglycohydrolase compare
CCNA_03287 +0.5 3.5 PadR-family transcriptional regulator compare
CCNA_00046 +0.5 2.5 hypothetical protein compare
CCNA_01951 +0.5 3.7 multimodular transpeptidase-transglycosylase PbpY compare
CCNA_03963 +0.5 2.5 hypothetical protein compare
CCNA_01968 +0.5 1.2 pentapeptide repeats containing protein compare
CCNA_03368 +0.5 3.1 hypothetical protein compare
CCNA_02601 +0.5 3.9 glutathione-dependent formaldehyde dehydrogenase compare
CCNA_03129 +0.5 4.0 peptidoglycan-specific endopeptidase, M23 family compare
CCNA_03989 +0.5 3.6 MarR-family HTH transcriptional regulator / N-acyltransferase compare
CCNA_01035 +0.5 3.8 gamma-glutamyltranspeptidase compare
CCNA_01443 +0.5 1.9 hypothetical protein compare
CCNA_02997 +0.5 2.1 cold shock protein CspA compare
CCNA_00662 +0.5 2.9 hypothetical protein compare
CCNA_01094 +0.5 1.5 hypothetical protein compare
CCNA_00946 +0.4 2.8 Basal-body rod modification protein FlgD compare
CCNA_01956 +0.4 3.3 outer membrane protein compare
CCNA_01016 +0.4 3.6 copper resistance protein B compare
CCNA_03033 +0.4 3.4 Flp pilus assembly protein TadD compare
CCNA_02858 +0.4 3.3 hipA-family phosphatidylinositol 3/4-kinase compare
CCNA_01186 +0.4 1.6 hypothetical protein compare
CCNA_02254 +0.4 1.7 isovaleryl-CoA dehydrogenase compare
CCNA_01617 +0.4 2.7 acetyltransferase compare
CCNA_03012 +0.4 3.0 peroxiredoxin compare
CCNA_01768 +0.4 2.2 hypothetical protein compare
CCNA_01944 +0.4 2.7 McrA-family restriction endonuclease compare
CCNA_03614 +0.4 2.7 hypothetical protein compare
CCNA_02177 +0.4 1.4 hypothetical protein compare
CCNA_01778 +0.4 3.5 penicillin-binding protein compare
CCNA_00950 +0.4 3.3 flagellar M-ring protein FliF compare
CCNA_01575 +0.4 3.5 glucose / sorbosone dehydrogenase compare
CCNA_01533 +0.4 2.8 hypothetical protein compare
CCNA_01756 +0.4 0.5 hypothetical protein compare
CCNA_03041 +0.4 3.5 pilus assembly protein CpaB compare
CCNA_01919 +0.4 2.7 FrnE protein compare
CCNA_03961 +0.4 1.3 hypothetical protein compare
CCNA_00780 +0.4 3.4 N-formylglutamate deformylase compare
CCNA_02171 +0.4 3.4 nucleoside permease nupC compare
CCNA_03024 +0.4 3.2 branched-chain amino acid aminotransferase compare
CCNA_01341 +0.4 3.2 DegP/HtrA-family serine protease compare
CCNA_03259 +0.4 3.1 mannose-6-phosphate isomerase compare
CCNA_02475 +0.4 3.2 transcriptional regulator vanR compare
CCNA_01619 +0.4 3.1 NYN domain protein compare


Specific Phenotypes

None in this experiment

For Caulobacter crescentus NA1000 in stress experiments

For stress Streptomycin sulfate salt across organisms