Experiment set8IT051 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction in presence of wild-type Pseudomonas N2-E2; replicate B

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_1472 -3.4 -1.5 Lipopolysaccharide heptosyltransferase I (EC 2.4.1.-) compare
Pf1N1B4_4544 -1.6 -3.7 Uncharacterized protein ImpA compare
Pf1N1B4_4297 -1.6 -2.1 FIG00966599: hypothetical protein compare
Pf1N1B4_4540 -1.6 -3.4 Uncharacterized protein ImpJ/VasE compare
Pf1N1B4_345 -1.5 -1.5 Integration host factor beta subunit compare
Pf1N1B4_232 -1.5 -0.9 DNA-binding response regulator, LuxR family compare
Pf1N1B4_448 -1.4 -1.4 Aminodeoxychorismate lyase (EC 4.1.3.38) compare
Pf1N1B4_4814 -1.4 -1.5 Iron(III) dicitrate transport system permease protein FecD (TC 3.A.1.14.1) compare
Pf1N1B4_904 -1.3 -1.7 DNA-binding protein HU-beta compare
Pf1N1B4_4669 -1.3 -1.9 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_4990 -1.3 -3.3 FIG018171: hypothetical protein of Cupin superfamily compare
Pf1N1B4_958 -1.3 -2.1 Stringent starvation protein B compare
Pf1N1B4_5924 -1.3 -6.5 hypothetical protein compare
Pf1N1B4_2912 -1.2 -2.4 GTP-binding and nucleic acid-binding protein YchF compare
Pf1N1B4_952 -1.2 -3.0 Cell division protein MraZ compare
Pf1N1B4_1059 -1.2 -2.0 FIG137478: Hypothetical protein YbgI compare
Pf1N1B4_2117 -1.2 -7.3 Ribonuclease PH (EC 2.7.7.56) compare
Pf1N1B4_608 -1.2 -1.8 Heme oxygenase HemO, associated with heme uptake compare
Pf1N1B4_13 -1.1 -1.5 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_124 -1.1 -2.2 Mechanosensitive ion channel compare
Pf1N1B4_2411 -1.1 -1.6 FIG00953568: hypothetical protein compare
Pf1N1B4_2736 -1.1 -1.3 ATP-dependent RNA helicase PA3950 compare
Pf1N1B4_1153 -1.1 -2.4 Quinolinate phosphoribosyltransferase [decarboxylating] (EC 2.4.2.19) compare
Pf1N1B4_5311 -1.1 -1.6 hypothetical protein compare
Pf1N1B4_2823 -1.1 -1.8 COG1496: Uncharacterized conserved protein compare
Pf1N1B4_3119 -1.1 -2.6 Holin compare
Pf1N1B4_3184 -1.1 -2.6 Isochorismatase (EC 3.3.2.1) compare
Pf1N1B4_126 -1.0 -2.8 Pirin compare
Pf1N1B4_5552 -1.0 -2.5 hypothetical protein compare
Pf1N1B4_1975 -1.0 -3.2 Transcriptional regulator, AsnC family compare
Pf1N1B4_4358 -1.0 -1.7 Acetyltransferase, GNAT family compare
Pf1N1B4_5926 -1.0 -5.4 hypothetical protein compare
Pf1N1B4_2949 -1.0 -1.1 FIG00956396: hypothetical protein compare
Pf1N1B4_1389 -1.0 -1.5 Lysine decarboxylase family compare
Pf1N1B4_4872 -1.0 -0.9 Short-chain dehydrogenase/reductase SDR compare
Pf1N1B4_4523 -1.0 -1.9 RNA polymerase sigma-70 factor, ECF subfamily compare
Pf1N1B4_3153 -1.0 -1.3 hypothetical protein compare
Pf1N1B4_2381 -0.9 -6.8 Protein yceI precursor compare
Pf1N1B4_3840 -0.9 -1.9 Response regulator NasT compare
Pf1N1B4_4179 -0.9 -3.7 phosphoribosyltransferase compare
Pf1N1B4_5927 -0.9 -8.1 Capsular polysaccharide biosynthesis protein compare
Pf1N1B4_1792 -0.9 -1.8 Taurine transport ATP-binding protein TauB compare
Pf1N1B4_69 -0.9 -1.2 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_5519 -0.9 -1.6 hypothetical protein compare
Pf1N1B4_5976 -0.9 -0.6 1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) compare
Pf1N1B4_5745 -0.9 -3.4 FIG139928: Putative protease compare
Pf1N1B4_4192 -0.9 -2.0 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_867 -0.9 -2.9 Serine acetyltransferase (EC 2.3.1.30) compare
Pf1N1B4_4201 -0.9 -1.3 Transcriptional regulator, LysR family compare
Pf1N1B4_3091 -0.9 -3.7 Membrane-associated zinc metalloprotease compare
Pf1N1B4_1691 -0.9 -1.3 hypothetical protein compare
Pf1N1B4_5013 -0.9 -1.5 Cointegrate resolution protein T compare
Pf1N1B4_1780 -0.9 -2.1 FIG00961586: hypothetical protein compare
Pf1N1B4_625 -0.9 -1.4 FIG023103: Predicted transmembrane protein compare
Pf1N1B4_4920 -0.9 -3.8 Aldehyde dehydrogenase (EC 1.2.1.3) compare
Pf1N1B4_5061 -0.9 -1.9 Valyl-tRNA synthetase compare
Pf1N1B4_4304 -0.9 -0.6 hypothetical protein compare
Pf1N1B4_4566 -0.9 -1.9 Universal stress protein family 7 compare
Pf1N1B4_2281 -0.9 -3.0 Predicted integral membrane protein compare
Pf1N1B4_3372 -0.9 -1.6 FIG00962464: hypothetical protein compare
Pf1N1B4_756 -0.9 -1.0 hypothetical protein compare
Pf1N1B4_1346 -0.8 -2.2 Urea ABC transporter, ATPase protein UrtD compare
Pf1N1B4_2479 -0.8 -2.8 Glycine cleavage system transcriptional antiactivator GcvR compare
Pf1N1B4_3325 -0.8 -1.3 Sigma factor RpoE negative regulatory protein RseB precursor compare
Pf1N1B4_3467 -0.8 -1.5 Flagellar biosynthesis protein FlgN compare
Pf1N1B4_5925 -0.8 -5.8 hypothetical protein compare
Pf1N1B4_68 -0.8 -1.2 Osmosensitive K+ channel histidine kinase KdpD (EC 2.7.3.-) compare
Pf1N1B4_5127 -0.8 -3.5 ABC-type protease/lipase transport system, ATPase and permease components compare
Pf1N1B4_4255 -0.8 -3.0 Putative phosphatase YfbT compare
Pf1N1B4_2517 -0.8 -3.2 Acyl-phosphate:glycerol-3-phosphate O-acyltransferase PlsY compare
Pf1N1B4_5722 -0.8 -1.4 Periplasmic protein p19 involved in high-affinity Fe2+ transport compare
Pf1N1B4_5736 -0.8 -3.3 Nitrate/nitrite transporter compare
Pf1N1B4_5512 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_4404 -0.8 -3.4 Transcriptional regulator, LysR family compare
Pf1N1B4_2971 -0.8 -3.0 hypothetical protein compare
Pf1N1B4_4952 -0.8 -2.2 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_5265 -0.8 -2.4 hypothetical protein compare
Pf1N1B4_5777 -0.8 -1.8 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_1135 -0.8 -2.3 FIG00960055: hypothetical protein compare
Pf1N1B4_4939 -0.8 -1.8 sodium/hydrogen exchanger family protein compare
Pf1N1B4_4102 -0.8 -1.0 Mannose-6-phosphate isomerase (EC 5.3.1.8) compare
Pf1N1B4_1388 -0.8 -1.4 Azurin compare
Pf1N1B4_1610 -0.8 -2.9 Nitrogen regulation protein NtrB (EC 2.7.13.3) compare
Pf1N1B4_3802 -0.7 -1.6 PlcB, ORFX, ORFP, ORFB, ORFA, ldh gene compare
Pf1N1B4_3547 -0.7 -1.5 DNA-binding response regulator compare
Pf1N1B4_1704 -0.7 -1.6 hypothetical protein compare
Pf1N1B4_5763 -0.7 -1.9 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_5055 -0.7 -2.4 (R)-3-hydroxydecanoyl-ACP:CoA transacylase PhaG (3-hydroxyacyl-CoA-acyl carrier protein transferase) (EC 2.4.1.-) compare
Pf1N1B4_4700 -0.7 -1.5 FIG00956898: hypothetical protein compare
Pf1N1B4_2874 -0.7 -1.5 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) compare
Pf1N1B4_2750 -0.7 -1.3 3-dehydroquinate dehydratase II (EC 4.2.1.10) compare
Pf1N1B4_2739 -0.7 -2.3 acetyltransferase, GNAT family compare
Pf1N1B4_4305 -0.7 -1.7 PUTATIVE METHYLTRANSFERASE compare
Pf1N1B4_381 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_4377 -0.7 -2.3 Cell wall hydrolyses involved in spore germination compare
Pf1N1B4_4812 -0.7 -2.8 Site-specific recombinase, phage integrase family compare
Pf1N1B4_1339 -0.7 -1.6 ABC transporter (iron.B12.siderophore.hemin) , ATP-binding component compare
Pf1N1B4_298 -0.7 -1.7 Transcription elongation factor GreB compare
Pf1N1B4_1627 -0.7 -3.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_2471 -0.7 -2.6 putative iron-regulated membrane protein compare
Pf1N1B4_4051 -0.7 -0.9 Isocitrate dehydrogenase [NADP] (EC 1.1.1.42); Monomeric isocitrate dehydrogenase [NADP] (EC 1.1.1.42) compare
Pf1N1B4_2189 -0.7 -1.3 Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation compare
Pf1N1B4_4436 -0.7 -2.3 Glutaminase (EC 3.5.1.2) compare
Pf1N1B4_4181 -0.7 -0.9 FIG00957123: hypothetical protein compare
Pf1N1B4_2674 -0.7 -1.7 hypothetical protein compare
Pf1N1B4_4755 -0.7 -1.1 ribosomal protein S6 glutaminyl transferase related protein compare
Pf1N1B4_3134 -0.7 -1.6 probable tail fiber assembly-like protein compare
Pf1N1B4_5292 -0.7 -1.5 hypothetical protein compare
Pf1N1B4_5159 -0.7 -2.3 Cellulose synthase operon protein C compare
Pf1N1B4_2380 -0.7 -4.7 Cytochrome B561 compare
Pf1N1B4_2213 -0.7 -2.1 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain compare
Pf1N1B4_5340 -0.7 -1.9 hypothetical protein compare
Pf1N1B4_1441 -0.7 -4.6 Putative esterase, FIGfam005057 compare
Pf1N1B4_430 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_3023 -0.7 -0.6 hypothetical protein compare
Pf1N1B4_104 -0.7 -2.4 Sensor protein PhoQ (EC 2.7.13.3) compare
Pf1N1B4_5029 -0.7 -1.4 Molybdenum ABC transporter, periplasmic molybdenum-binding protein ModA (TC 3.A.1.8.1) compare
Pf1N1B4_4132 -0.7 -1.8 Mobile element protein compare
Pf1N1B4_5507 -0.7 -1.8 hypothetical protein compare
Pf1N1B4_5031 -0.7 -2.6 Molybdenum transport ATP-binding protein ModC (TC 3.A.1.8.1) compare
Pf1N1B4_2635 -0.7 -1.3 hypothetical protein compare
Pf1N1B4_3936 -0.7 -1.8 Transcriptional regulator, LysR family compare
Pf1N1B4_4485 -0.7 -1.6 membrane protein, putative compare
Pf1N1B4_1675 -0.7 -1.4 Transcriptional regulator compare
Pf1N1B4_5224 -0.7 -1.3 tRNA-Arg-CCT compare
Pf1N1B4_4603 -0.7 -2.1 hypothetical protein compare
Pf1N1B4_4657 -0.7 -2.3 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2407 -0.7 -2.8 FIG00953367: hypothetical protein compare
Pf1N1B4_4049 -0.7 -2.9 Nudix-like NDP and NTP phosphohydrolase YmfB compare
Pf1N1B4_1527 -0.7 -2.3 Queuosine Biosynthesis QueC ATPase compare
Pf1N1B4_412 -0.7 -0.9 L-arabinose 1-dehydrogenase / D-galactose 1-dehydrogenase (EC 1.1.1.46; EC 1.1.1.48) (from data) compare
Pf1N1B4_3966 -0.6 -1.8 serine/threonine protein kinase compare
Pf1N1B4_4489 -0.6 -2.2 Transcriptional regulator, LuxR family compare
Pf1N1B4_4035 -0.6 -1.1 NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) compare
Pf1N1B4_5853 -0.6 -1.8 Glutamine synthetase (EC 6.3.1.2), putative compare
Pf1N1B4_4727 -0.6 -1.5 HMP-PP hydrolase (pyridoxal phosphatase) Cof, detected in genetic screen for thiamin metabolic genes (PMID:15292217) compare
Pf1N1B4_2987 -0.6 -2.3 NAD-dependent formate dehydrogenase delta subunit compare
Pf1N1B4_229 -0.6 -3.3 Chemotaxis protein CheV (EC 2.7.3.-) compare
Pf1N1B4_675 -0.6 -1.7 hypothetical protein compare
Pf1N1B4_350 -0.6 -2.1 Chorismate mutase I (EC 5.4.99.5) / Prephenate dehydratase (EC 4.2.1.51) compare
Pf1N1B4_1287 -0.6 -2.7 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_2866 -0.6 -1.0 Periplasmic hemin-binding protein compare
Pf1N1B4_4458 -0.6 -2.0 Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) compare
Pf1N1B4_4561 -0.6 -2.5 Flavohemoprotein (Hemoglobin-like protein) (Flavohemoglobin) (Nitric oxide dioxygenase) (EC 1.14.12.17) compare
Pf1N1B4_4670 -0.6 -2.4 Sensory box/GGDEF family protein compare
Pf1N1B4_5239 -0.6 -2.2 hypothetical protein compare
Pf1N1B4_1781 -0.6 -1.2 hypothetical protein compare
Pf1N1B4_2096 -0.6 -2.3 Protein serine/threonine phosphatase PrpC, regulation of stationary phase compare
Pf1N1B4_662 -0.6 -2.6 FIG00955875: hypothetical protein compare
Pf1N1B4_5917 -0.6 -1.2 Multimeric flavodoxin WrbA compare
Pf1N1B4_3588 -0.6 -1.4 N-Acetylneuraminate cytidylyltransferase (EC 2.7.7.43) compare
Pf1N1B4_1501 -0.6 -2.4 3-oxoacyl-[ACP] synthase compare
Pf1N1B4_2021 -0.6 -0.8 hypothetical protein compare
Pf1N1B4_1558 -0.6 -2.5 Transcriptional regulator PhaD compare
Pf1N1B4_4551 -0.6 -1.7 3-oxoacyl-[acyl-carrier-protein] synthase, KASII (EC 2.3.1.179) compare
Pf1N1B4_2688 -0.6 -1.7 Gamma-glutamyl phosphate reductase (EC 1.2.1.41) compare
Pf1N1B4_1118 -0.6 -1.3 Tryptophan synthase beta chain like (EC 4.2.1.20) compare
Pf1N1B4_835 -0.6 -0.6 Trehalose-6-phosphate hydrolase (EC 3.2.1.93) compare
Pf1N1B4_5768 -0.6 -1.7 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_4857 -0.6 -1.8 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_1214 -0.6 -2.6 Chorismate--pyruvate lyase (EC 4.1.3.40) compare
Pf1N1B4_3874 -0.6 -1.0 Type cbb3 cytochrome oxidase biogenesis protein CcoG, involved in Cu oxidation compare
Pf1N1B4_3783 -0.6 -1.5 FIG00958237: hypothetical protein compare
Pf1N1B4_5835 -0.6 -0.9 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9) compare
Pf1N1B4_2632 -0.6 -1.7 FIG003003: hypothetical protein compare
Pf1N1B4_1469 -0.6 -4.7 Heptose kinase WapQ, eukaryotic type compare
Pf1N1B4_5389 -0.6 -2.8 hypothetical protein compare
Pf1N1B4_3843 -0.6 -1.1 Ribosome modulation factor compare
Pf1N1B4_4847 -0.6 -1.7 Various polyols ABC transporter, ATP-binding component compare
Pf1N1B4_4243 -0.6 -2.8 Alcohol dehydrogenase (EC 1.1.1.1) compare
Pf1N1B4_5274 -0.6 -2.3 hypothetical protein compare
Pf1N1B4_2142 -0.6 -2.4 FIG00954130: hypothetical protein compare
Pf1N1B4_5738 -0.6 -3.5 Nitrate/nitrite transporter compare
Pf1N1B4_4866 -0.6 -1.5 hypothetical protein compare
Pf1N1B4_3713 -0.6 -1.1 Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) compare
Pf1N1B4_3506 -0.6 -3.4 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_4736 -0.6 -1.7 Fap amyloid fibril minor component compare
Pf1N1B4_3145 -0.6 -1.5 Decarboxylase family protein compare
Pf1N1B4_2484 -0.6 -1.9 hypothetical protein compare
Pf1N1B4_3632 -0.6 -2.1 Flagellar motor rotation protein MotB compare
Pf1N1B4_2430 -0.6 -2.5 FIG004891: hypothetical protein in carnitine cluster compare
Pf1N1B4_373 -0.6 -1.0 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC compare
Pf1N1B4_4299 -0.6 -1.3 sensor histidine kinase compare
Pf1N1B4_4026 -0.6 -3.2 Outer membrane porin, OprD family compare
Pf1N1B4_4640 -0.6 -2.3 MoxR-like ATPase in aerotolerance operon compare
Pf1N1B4_4043 -0.6 -1.3 Type II and III secretion system family protein compare
Pf1N1B4_3224 -0.6 -2.6 RNA polymerase associated protein RapA (EC 3.6.1.-) compare
Pf1N1B4_4054 -0.6 -2.9 ATP-dependent Clp protease adaptor protein ClpS compare
Pf1N1B4_4651 -0.6 -2.1 Transcriptional regulator, AraC family compare
Pf1N1B4_4301 -0.6 -2.3 hypothetical protein compare
Pf1N1B4_3070 -0.6 -2.5 Ribosomal RNA large subunit methyltransferase A (EC 2.1.1.51) compare
Pf1N1B4_516 -0.6 -1.7 Sensor histidine kinase compare
Pf1N1B4_4491 -0.6 -1.7 ABC transporter permease protein compare
Pf1N1B4_149 -0.6 -1.5 Pyoverdine sidechain non-ribosomal peptide synthetase PvdD compare
Pf1N1B4_141 -0.5 -2.9 PvdE, pyoverdine ABC export system, fused ATPase and permease components compare
Pf1N1B4_96 -0.5 -2.0 Selenophosphate-dependent tRNA 2-selenouridine synthase compare
Pf1N1B4_3872 -0.5 -2.3 Putative analog of CcoH, COG3198 compare
Pf1N1B4_4568 -0.5 -1.0 FIG00793915: hypothetical protein compare
Pf1N1B4_110 -0.5 -1.5 Queuosine biosynthesis QueD, PTPS-I compare
Pf1N1B4_4956 -0.5 -2.9 Thioredoxin reductase (EC 1.8.1.9) compare


Specific Phenotypes

None in this experiment

For Pseudomonas fluorescens FW300-N1B4 in denitrifying experiments

For denitrifying Sodium pyruvate across organisms