Experiment set8IT051 for Dinoroseobacter shibae DFL-12

Compare to:

Dino_ML3_MIT diversity barseq

200 most detrimental genes:

  gene name fitness t score description  
Dshi_3472 +3.2 3.5 Argininosuccinate synthase (RefSeq) compare
Dshi_3366 +2.7 3.5 hypothetical protein (RefSeq) compare
Dshi_1683 +2.0 4.6 6-phosphogluconolactonase (RefSeq) compare
Dshi_2986 +2.0 2.8 protein of unknown function DUF45 (RefSeq) compare
Dshi_0722 +1.9 4.3 hypothetical protein (RefSeq) compare
Dshi_2639 +1.8 3.6 carbamoyl-phosphate synthase, large subunit (RefSeq) compare
Dshi_2768 +1.8 4.7 hypothetical protein (RefSeq) compare
Dshi_0796 +1.6 6.0 ornithine carbamoyltransferase (RefSeq) compare
Dshi_2092 +1.6 2.5 glycine cleavage T protein (aminomethyl transferase) (RefSeq) compare
Dshi_0345 +1.3 1.8 hypothetical protein (RefSeq) compare
Dshi_3295 +1.3 2.7 Polyprenyl synthetase (RefSeq) compare
Dshi_0739 +1.3 5.0 Ppx/GppA phosphatase (RefSeq) compare
Dshi_3291 +1.2 4.6 NAD-dependent epimerase/dehydratase (RefSeq) compare
Dshi_1537 +1.1 1.4 phosphate uptake regulator, PhoU (RefSeq) compare
Dshi_0653 +1.0 2.8 Prephenate dehydratase (RefSeq) compare
Dshi_2136 +1.0 1.3 stationary-phase survival protein SurE (RefSeq) compare
Dshi_2926 +0.9 2.6 MaoC domain protein dehydratase (RefSeq) compare
Dshi_3041 +0.9 1.1 ribosome-binding factor A (RefSeq) compare
Dshi_1304 +0.9 2.6 Enoyl-CoA hydratase/isomerase (RefSeq) compare
Dshi_1887 +0.9 3.0 ribonuclease D (RefSeq) compare
Dshi_0733 +0.9 1.2 multiple resistance and pH regulation protein F (RefSeq) compare
Dshi_3340 +0.9 2.6 hypothetical protein (RefSeq) compare
Dshi_0756 +0.9 2.9 hypothetical protein (RefSeq) compare
Dshi_2430 +0.9 3.9 L-rhamnose 1-epimerase (RefSeq) compare
Dshi_1443 +0.9 1.6 TRAP transporter solute receptor, TAXI family (RefSeq) compare
Dshi_1018 +0.8 1.9 hypothetical protein (RefSeq) compare
Dshi_1142 +0.8 2.4 hypothetical protein (RefSeq) compare
Dshi_2975 +0.8 2.6 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut (RefSeq) compare
Dshi_1707 +0.8 2.2 putative hemolysin (RefSeq) compare
Dshi_3745 +0.8 2.1 RC102 (RefSeq) compare
Dshi_3062 +0.8 2.2 argininosuccinate lyase (RefSeq) compare
Dshi_0628 +0.8 3.1 extracellular solute-binding protein family 1 (RefSeq) compare
Dshi_0337 +0.8 2.2 ATPase MipZ (RefSeq) compare
Dshi_4186 +0.8 1.6 ABC transporter related (RefSeq) compare
Dshi_1368 +0.8 2.2 hypothetical protein (RefSeq) compare
Dshi_3531 +0.8 1.0 transcriptional regulator, Fis family (RefSeq) compare
Dshi_3318 +0.8 1.5 D-3-phosphoglycerate dehydrogenase (RefSeq) compare
Dshi_1629 +0.7 2.7 hypothetical protein (RefSeq) compare
Dshi_3092 +0.7 1.9 hypothetical protein (RefSeq) compare
Dshi_1333 +0.7 2.9 DEAD/DEAH box helicase domain protein (RefSeq) compare
Dshi_3417 +0.7 2.9 hypothetical protein (RefSeq) compare
Dshi_2079 +0.7 2.8 transcriptional regulator, LysR family (RefSeq) compare
Dshi_1387 +0.7 1.6 ATP-dependent Clp protease, ATP-binding subunit ClpX (RefSeq) compare
Dshi_0365 +0.7 2.1 anti-ECFsigma factor, ChrR (RefSeq) compare
Dshi_4154 +0.7 2.0 beta-lactamase domain protein (RefSeq) compare
Dshi_0001 +0.7 2.4 glutamate synthase, small subunit (RefSeq) compare
Dshi_0002 +0.7 4.8 Glutamate synthase (ferredoxin) (RefSeq) compare
Dshi_1620 +0.7 2.4 protein of unknown function DUF882 (RefSeq) compare
Dshi_0596 +0.7 1.2 2-isopropylmalate synthase (RefSeq) compare
Dshi_3447 +0.7 3.6 protein-export protein SecB (RefSeq) compare
Dshi_2641 +0.7 1.7 Thymidine kinase (RefSeq) compare
Dshi_5001 +0.7 1.0 hypothtical protein (RefSeq) compare
Dshi_0933 +0.7 1.5 DNA binding domain, excisionase family (RefSeq) compare
Dshi_1532 +0.7 5.6 PAS/PAC sensor signal transduction histidine kinase (RefSeq) compare
Dshi_0372 +0.7 2.7 hypothetical protein (RefSeq) compare
Dshi_3032 +0.7 1.9 Heparinase II/III family protein (RefSeq) compare
Dshi_0346 +0.6 1.8 protein of unknown function DUF55 (RefSeq) compare
Dshi_2475 +0.6 1.5 protein of unknown function UPF0040 (RefSeq) compare
Dshi_1777 +0.6 1.1 ATP-dependent protease La (RefSeq) compare
Dshi_4213 +0.6 2.2 Cobyrinic acid ac-diamide synthase (RefSeq) compare
Dshi_3150 +0.6 4.1 aminotransferase class IV (RefSeq) compare
Dshi_1202 +0.6 0.9 heat shock protein DnaJ domain protein (RefSeq) compare
Dshi_1673 +0.6 3.7 Ppx/GppA phosphatase (RefSeq) compare
Dshi_0852 +0.6 2.1 lipid A ABC exporter family, fused ATPase and inner membrane subunits (RefSeq) compare
Dshi_3071 +0.6 1.8 Beta tubulin, autoregulation binding site (RefSeq) compare
Dshi_3637 +0.6 2.4 hypothetical protein (RefSeq) compare
Dshi_3070 +0.6 2.7 methyltransferase small (RefSeq) compare
Dshi_0101 +0.6 2.1 hypothetical protein (RefSeq) compare
Dshi_1513 +0.6 1.6 tRNA/rRNA methyltransferase (SpoU) (RefSeq) compare
Dshi_4105 +0.6 1.3 Resolvase domain (RefSeq) compare
Dshi_3056 +0.6 1.9 ABC transporter related (RefSeq) compare
Dshi_3055 +0.6 1.2 protein of unknown function DUF214 (RefSeq) compare
Dshi_3977 +0.6 0.7 hypothetical protein (RefSeq) compare
Dshi_0809 +0.6 2.0 GTP-binding protein LepA (RefSeq) compare
Dshi_2190 +0.6 1.6 trigger factor (RefSeq) compare
Dshi_3530 +0.6 3.0 bacteriochlorophyll/chlorophyll synthetase (RefSeq) compare
Dshi_1948 +0.6 1.5 basic membrane lipoprotein (RefSeq) compare
Dshi_1708 +0.6 2.2 NERD domain protein (RefSeq) compare
Dshi_0377 +0.6 2.0 hypothetical protein (RefSeq) compare
Dshi_0222 +0.6 0.9 hypothetical protein (RefSeq) compare
Dshi_0238 +0.6 1.6 hypothetical protein (RefSeq) compare
Dshi_0975 +0.6 2.1 transcriptional regulator, LacI family (RefSeq) compare
Dshi_0660 +0.6 1.7 transcriptional regulator, Crp/Fnr family (RefSeq) compare
Dshi_2535 +0.5 1.7 permease (RefSeq) compare
Dshi_1375 +0.5 1.7 Ornithine decarboxylase (RefSeq) compare
Dshi_3521 +0.5 1.8 antenna complex, alpha/beta subunit (RefSeq) compare
Dshi_0790 +0.5 2.7 hypothetical protein (RefSeq) compare
Dshi_1676 +0.5 2.7 HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq) compare
Dshi_3431 +0.5 3.6 electron transport protein SCO1/SenC (RefSeq) compare
Dshi_2632 +0.5 1.7 hypothetical protein (RefSeq) compare
Dshi_3279 +0.5 2.6 Glutathione S-transferase domain (RefSeq) compare
Dshi_3456 +0.5 0.8 methyltransferase GidB (RefSeq) compare
Dshi_1169 +0.5 2.8 N-acetylmuramoyl-L-alanine amidase (RefSeq) compare
Dshi_0854 +0.5 1.2 hypothetical protein (RefSeq) compare
Dshi_1180 +0.5 1.7 Queuosine biosynthesis protein (RefSeq) compare
Dshi_1131 +0.5 1.4 hypothetical protein (RefSeq) compare
Dshi_2056 +0.5 1.5 NUDIX hydrolase (RefSeq) compare
Dshi_2474 +0.5 1.4 S-adenosyl-methyltransferase MraW (RefSeq) compare
Dshi_0073 +0.5 1.3 anti-sigma-factor antagonist (RefSeq) compare
Dshi_2461 +0.5 1.8 PAAR repeat-containing protein (RefSeq) compare
Dshi_3418 +0.5 1.4 HemY domain protein (RefSeq) compare
Dshi_3076 +0.5 2.3 transcription elongation factor GreA (RefSeq) compare
Dshi_1075 +0.5 1.5 protein of unknown function DUF1476 (RefSeq) compare
Dshi_2060 +0.5 2.5 Aconitate hydratase (EC 4.2.1.3) (from data) compare
Dshi_3383 +0.5 1.2 Rhomboid family protein (RefSeq) compare
Dshi_1766 +0.5 0.8 peptidoglycan-binding LysM (RefSeq) compare
Dshi_0085 +0.5 1.4 3-isopropylmalate dehydratase, large subunit (RefSeq) compare
Dshi_1024 +0.5 4.5 histone family protein nucleoid-structuring protein H-NS (RefSeq) compare
Dshi_0163 +0.5 2.6 chromosome segregation protein SMC (RefSeq) compare
Dshi_2129 +0.5 2.4 DNA repair protein RadA (RefSeq) compare
Dshi_4177 +0.5 2.2 Acetamidase/Formamidase (RefSeq) compare
Dshi_3241 +0.5 2.5 glycosyl transferase group 1 (RefSeq) compare
Dshi_3286 +0.5 2.5 cytochrome c biogenesis protein transmembrane region (RefSeq) compare
Dshi_1016 +0.5 1.1 PhoH family protein (RefSeq) compare
Dshi_2688 +0.5 2.5 cytochrome bd ubiquinol oxidase subunit I (RefSeq) compare
Dshi_0723 +0.5 2.6 Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) (from data) compare
Dshi_3522 +0.5 2.2 antenna complex alpha/beta subunit (RefSeq) compare
Dshi_0724 +0.5 2.1 hypothetical protein (RefSeq) compare
Dshi_0956 +0.5 2.3 TRAP dicarboxylate transporter, DctM subunit (RefSeq) compare
Dshi_0320 +0.5 2.3 polar amino acid ABC transporter, inner membrane subunit (RefSeq) compare
Dshi_3094 +0.5 0.5 dihydroorotase, multifunctional complex type (RefSeq) compare
Dshi_4166 +0.5 1.6 hypothetical protein (RefSeq) compare
Dshi_2870 +0.5 1.0 hypothetical protein (RefSeq) compare
Dshi_0385 +0.5 2.7 DNA-directed DNA polymerase (RefSeq) compare
Dshi_0386 +0.5 2.8 N-formylglutamate amidohydrolase (RefSeq) compare
Dshi_1699 +0.5 1.9 hypothetical protein (RefSeq) compare
Dshi_2717 +0.5 1.0 hypothetical protein (RefSeq) compare
Dshi_2745 +0.5 1.5 phenazine biosynthesis protein PhzF family (RefSeq) compare
Dshi_1160 +0.4 1.7 MazG family protein (RefSeq) compare
Dshi_1062 +0.4 1.6 Isoprenylcysteine carboxyl methyltransferase (RefSeq) compare
Dshi_3746 +0.4 0.6 hypothetical protein (RefSeq) compare
Dshi_2159 +0.4 2.6 Transketolase central region (RefSeq) compare
Dshi_2160 +0.4 3.2 pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase (RefSeq) compare
Dshi_1478 +0.4 1.3 Disulphide bond formation protein DsbB (RefSeq) compare
Dshi_4012 +0.4 1.2 transcriptional regulator, AbrB family (RefSeq) compare
Dshi_2779 +0.4 1.5 protein of unknown function UPF0005 (RefSeq) compare
Dshi_2330 +0.4 2.7 protein of unknown function DUF1194 (RefSeq) compare
Dshi_0080 +0.4 1.0 protein of unknown function DUF6 transmembrane (RefSeq) compare
Dshi_1297 +0.4 2.4 acyl-CoA dehydrogenase domain protein (RefSeq) compare
Dshi_3819 +0.4 1.0 phenylacetate-CoA oxygenase, PaaH subunit (RefSeq) compare
Dshi_1349 +0.4 2.5 ABC transporter related (RefSeq) compare
Dshi_0725 +0.4 1.6 hypothetical protein (RefSeq) compare
Dshi_3519 +0.4 2.1 chlorophyllide reductase subunit Z (RefSeq) compare
Dshi_0368 +0.4 2.5 protein of unknown function DUF1365 (RefSeq) compare
Dshi_0407 +0.4 1.7 transcriptional regulator, XRE family (RefSeq) compare
Dshi_2226 +0.4 1.7 Glutamate--putrescine ligase (RefSeq) compare
Dshi_4176 +0.4 2.1 oxidoreductase FAD/NAD(P)-binding domain protein (RefSeq) compare
Dshi_2412 +0.4 1.6 Chloride channel core (RefSeq) compare
Dshi_0614 +0.4 0.8 hypothetical protein (RefSeq) compare
Dshi_1781 +0.4 1.7 acetolactate synthase, small subunit (RefSeq) compare
Dshi_4174 +0.4 1.4 hypothetical protein (RefSeq) compare
Dshi_0416 +0.4 2.0 protein of unknown function DUF1127 (RefSeq) compare
Dshi_1290 +0.4 1.5 molybdenum cofactor biosynthesis protein A (RefSeq) compare
Dshi_3102 +0.4 0.6 hypothetical protein (RefSeq) compare
Dshi_0375 +0.4 2.4 ABC transporter related (RefSeq) compare
Dshi_2168 +0.4 1.6 hypothetical protein (RefSeq) compare
Dshi_2939 +0.4 2.0 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) compare
Dshi_2647 +0.4 1.8 hypothetical protein (RefSeq) compare
Dshi_1788 +0.4 1.3 cold-shock DNA-binding domain protein (RefSeq) compare
Dshi_2175 +0.4 1.9 phage prohead protease, HK97 family (RefSeq) compare
Dshi_2627 +0.4 1.7 nitroreductase (RefSeq) compare
Dshi_0600 +0.4 1.5 MORN repeat-containing protein (RefSeq) compare
Dshi_3523 +0.4 2.1 photosynthetic reaction center L subunit (RefSeq) compare
Dshi_3336 +0.4 1.5 hypothetical protein (RefSeq) compare
Dshi_2319 +0.4 2.3 Quinone oxidoreductase putative YhdH/YhfP (RefSeq) compare
Dshi_0161 +0.4 1.3 cobalt transporter, subunit CbtA (RefSeq) compare
Dshi_4209 +0.4 2.1 glycerophosphoryl diester phosphodiesterase (RefSeq) compare
Dshi_3484 +0.4 1.8 Hpt domain protein (RefSeq) compare
Dshi_1579 +0.4 1.0 CinA domain protein (RefSeq) compare
Dshi_1201 +0.4 1.7 Tetratricopeptide TPR_2 repeat protein (RefSeq) compare
Dshi_1224 +0.4 1.7 hypothetical protein (RefSeq) compare
Dshi_3861 +0.4 1.4 UDP-glucose 6-dehydrogenase (RefSeq) compare
Dshi_2126 +0.4 2.8 peptidase M24 (RefSeq) compare
Dshi_2219 +0.4 0.9 cold-shock DNA-binding domain protein (RefSeq) compare
Dshi_0784 +0.4 1.0 RNA-binding S4 (RefSeq) compare
Dshi_0831 +0.4 1.9 uracil phosphoribosyltransferase (RefSeq) compare
Dshi_1147 +0.4 2.2 processing peptidase (RefSeq) compare
Dshi_2207 +0.4 1.0 hypothetical protein (RefSeq) compare
Dshi_0167 +0.4 0.9 protein of unknown function DUF1636 (RefSeq) compare
Dshi_1061 +0.4 1.8 hypothetical protein (RefSeq) compare
Dshi_2229 +0.4 1.4 transcriptional regulator, LysR family (RefSeq) compare
Dshi_2670 +0.4 1.9 ABC transporter related (RefSeq) compare
Dshi_2669 +0.4 1.1 Sel1 domain protein repeat-containing protein (RefSeq) compare
Dshi_2703 +0.4 1.0 hypothetical protein (RefSeq) compare
Dshi_2662 +0.4 2.3 extracellular solute-binding protein family 3 (RefSeq) compare
Dshi_0364 +0.4 2.0 protein of unknown function DUF195 (RefSeq) compare
Dshi_4218 +0.4 2.0 hypothetical protein (RefSeq) compare
Dshi_4001 +0.4 1.7 hypothetical protein (RefSeq) compare
Dshi_1561 +0.4 2.0 transcription-repair coupling factor (RefSeq) compare
Dshi_2800 +0.4 1.8 cytochrome c class I (RefSeq) compare
Dshi_2274 +0.4 0.8 fructose-1,6-bisphosphatase, class II (RefSeq) compare
Dshi_0652 +0.4 2.0 hypothetical protein (RefSeq) compare
Dshi_3539 +0.4 2.1 PUCC protein (RefSeq) compare
Dshi_0740 +0.4 2.3 Polyphosphate kinase (RefSeq) compare
Dshi_1643 +0.4 1.2 recA protein (RefSeq) compare
Dshi_2233 +0.4 0.5 poly(R)-hydroxyalkanoic acid synthase, class I (RefSeq) compare
Dshi_1484 +0.4 0.9 hypothetical protein (RefSeq) compare
Dshi_0619 +0.4 1.8 hypothetical protein (RefSeq) compare
Dshi_1300 +0.4 1.7 Propionyl-CoA carboxylase (RefSeq) compare
Dshi_0626 +0.4 1.5 binding-protein-dependent transport systems inner membrane component (RefSeq) compare


Specific Phenotypes

None in this experiment