Experiment set8IT050 for Pseudomonas fluorescens FW300-N1B4

Compare to:

Nitrate reduction, replicate B, timepoint 2

200 most important genes:

  gene name fitness t score description  
Pf1N1B4_5611 -2.8 -1.6 L-carnitine dehydratase/bile acid-inducible protein F (EC 2.8.3.16) compare
Pf1N1B4_345 -2.2 -1.6 Integration host factor beta subunit compare
Pf1N1B4_2880 -2.2 -10.6 Ketol-acid reductoisomerase (EC 1.1.1.86) compare
Pf1N1B4_952 -2.1 -4.4 Cell division protein MraZ compare
Pf1N1B4_5312 -2.1 -6.6 Putative activity regulator of membrane protease YbbK compare
Pf1N1B4_5735 -2.1 -10.5 Respiratory nitrate reductase alpha chain (EC 1.7.99.4) compare
Pf1N1B4_742 -2.0 -8.0 Argininosuccinate synthase (EC 6.3.4.5) compare
Pf1N1B4_4476 -2.0 -4.0 Branched-chain amino acid aminotransferase (EC 2.6.1.42) compare
Pf1N1B4_3697 -2.0 -5.9 Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2) compare
Pf1N1B4_2545 -1.9 -11.4 Anthranilate synthase, aminase component (EC 4.1.3.27) compare
Pf1N1B4_1434 -1.9 -5.2 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_2021 -1.8 -2.4 hypothetical protein compare
Pf1N1B4_1534 -1.8 -12.2 Glutamate synthase [NADPH] large chain (EC 1.4.1.13) compare
Pf1N1B4_1627 -1.8 -5.3 Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19) compare
Pf1N1B4_15 -1.8 -4.7 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) compare
Pf1N1B4_1067 -1.8 -4.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
Pf1N1B4_5729 -1.8 -7.0 Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2) compare
Pf1N1B4_5734 -1.7 -5.9 Respiratory nitrate reductase beta chain (EC 1.7.99.4) compare
Pf1N1B4_3976 -1.7 -6.3 Transmembrane regulator protein PrtR compare
Pf1N1B4_2549 -1.6 -6.2 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) compare
Pf1N1B4_4833 -1.6 -3.0 DNA-binding response regulator, LuxR family compare
Pf1N1B4_1725 -1.6 -9.2 Sulfate transport system permease protein CysW compare
Pf1N1B4_4834 -1.6 -4.9 Sensor histidine kinase compare
Pf1N1B4_2338 -1.6 -5.9 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5665 -1.5 -3.4 Sulfite reductase [NADPH] hemoprotein beta-component (EC 1.8.1.2) compare
Pf1N1B4_2280 -1.5 -7.1 Threonine dehydratase biosynthetic (EC 4.3.1.19) compare
Pf1N1B4_5751 -1.5 -4.8 Functional role page for Anaerobic nitric oxide reductase transcription regulator NorR compare
Pf1N1B4_267 -1.5 -2.6 Enoyl-CoA hydratase (EC 4.2.1.17) compare
Pf1N1B4_2773 -1.5 -3.0 COG0523: Putative GTPases (G3E family) compare
Pf1N1B4_2674 -1.5 -2.3 hypothetical protein compare
Pf1N1B4_5666 -1.5 -2.0 Oxidoreductase probably involved in sulfite reduction compare
Pf1N1B4_2337 -1.4 -4.0 Homoserine O-acetyltransferase (EC 2.3.1.31) compare
Pf1N1B4_5736 -1.4 -3.2 Nitrate/nitrite transporter compare
Pf1N1B4_3091 -1.4 -3.8 Membrane-associated zinc metalloprotease compare
Pf1N1B4_5030 -1.4 -4.1 Molybdenum transport system permease protein ModB (TC 3.A.1.8.1) compare
Pf1N1B4_27 -1.4 -2.5 Biosynthetic Aromatic amino acid aminotransferase alpha (EC 2.6.1.57) @ Aromatic-amino-acid aminotransferase (EC 2.6.1.57) compare
Pf1N1B4_4172 -1.4 -2.0 hypothetical protein compare
Pf1N1B4_2272 -1.4 -2.9 D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95) compare
Pf1N1B4_1535 -1.4 -3.0 hypothetical protein compare
Pf1N1B4_2209 -1.3 -2.9 Exopolyphosphatase (EC 3.6.1.11) compare
Pf1N1B4_2112 -1.3 -7.9 Bona fide RidA/YjgF/TdcF/RutC subgroup compare
Pf1N1B4_1626 -1.3 -5.5 Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-) compare
Pf1N1B4_1533 -1.3 -5.3 Glutamate synthase [NADPH] small chain (EC 1.4.1.13) compare
Pf1N1B4_1113 -1.3 -5.0 Predicted D-glucarate or D-galactorate regulator, GntR family compare
Pf1N1B4_1726 -1.3 -4.7 Sulfate transport system permease protein CysT compare
Pf1N1B4_4517 -1.3 -1.6 Dihydropyrimidinase (EC 3.5.2.2) compare
Pf1N1B4_6 -1.3 -2.4 Phosphoribosylanthranilate isomerase (EC 5.3.1.24) compare
Pf1N1B4_3130 -1.3 -1.1 Bacteriophage protein GP46 compare
Pf1N1B4_3620 -1.3 -2.4 Flagellar biosynthesis protein FliR compare
Pf1N1B4_4835 -1.3 -2.0 Carbon starvation protein A compare
Pf1N1B4_4103 -1.3 -1.5 Flagellar synthesis regulator FleN compare
Pf1N1B4_929 -1.3 -2.2 FIG00964214: hypothetical protein compare
Pf1N1B4_97 -1.3 -5.0 Selenide,water dikinase (EC 2.7.9.3) compare
Pf1N1B4_654 -1.3 -5.3 Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-) / Thiamin-phosphate pyrophosphorylase-like protein compare
Pf1N1B4_3443 -1.2 -2.3 Arginine N-succinyltransferase (EC 2.3.1.109) compare
Pf1N1B4_3594 -1.2 -2.9 Flagellin protein FlaA compare
Pf1N1B4_3665 -1.2 -1.9 Transcriptional regulator, TetR family compare
Pf1N1B4_12 -1.2 -4.0 3-isopropylmalate dehydrogenase (EC 1.1.1.85) compare
Pf1N1B4_2651 -1.2 -3.1 3,4-dihydroxy-2-butanone 4-phosphate synthase (EC 4.1.99.12) / GTP cyclohydrolase II (EC 3.5.4.25) compare
Pf1N1B4_5645 -1.2 -2.3 Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2) compare
Pf1N1B4_13 -1.2 -1.2 SAM-dependent methyltransferase YafE (UbiE paralog) compare
Pf1N1B4_2303 -1.2 -6.9 Dihydroxy-acid dehydratase (EC 4.2.1.9) compare
Pf1N1B4_2536 -1.2 -6.3 Probable two-component sensor, near polyamine transporter compare
Pf1N1B4_3281 -1.2 -3.4 AidA compare
Pf1N1B4_5519 -1.2 -1.7 hypothetical protein compare
Pf1N1B4_847 -1.2 -4.4 2-isopropylmalate synthase (EC 2.3.3.13) compare
Pf1N1B4_1624 -1.2 -4.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
Pf1N1B4_3119 -1.2 -2.4 Holin compare
Pf1N1B4_1 -1.2 -1.1 Colicin V production protein compare
Pf1N1B4_2695 -1.1 -0.8 Rare lipoprotein A precursor compare
Pf1N1B4_2548 -1.1 -3.0 Anthranilate phosphoribosyltransferase (EC 2.4.2.18) compare
Pf1N1B4_1724 -1.1 -2.8 Sulfate and thiosulfate import ATP-binding protein CysA (EC 3.6.3.25) compare
Pf1N1B4_3168 -1.1 -2.6 AmpG permease compare
Pf1N1B4_4225 -1.1 -3.6 transcriptional regulator, AraC family compare
Pf1N1B4_1262 -1.1 -4.5 Lead, cadmium, zinc and mercury transporting ATPase (EC 3.6.3.3) (EC 3.6.3.5); Copper-translocating P-type ATPase (EC 3.6.3.4) compare
Pf1N1B4_5476 -1.1 -2.0 hypothetical protein compare
Pf1N1B4_4299 -1.1 -1.3 sensor histidine kinase compare
Pf1N1B4_5760 -1.1 -2.6 Nitric-oxide reductase subunit C (EC 1.7.99.7) compare
Pf1N1B4_230 -1.1 -1.9 FIG00953472: hypothetical protein compare
Pf1N1B4_1312 -1.0 -2.7 hypothetical protein compare
Pf1N1B4_5293 -1.0 -2.3 hypothetical protein compare
Pf1N1B4_2807 -1.0 -1.7 FKBP-type peptidyl-prolyl cis-trans isomerase SlpA (EC 5.2.1.8) compare
Pf1N1B4_3222 -1.0 -0.9 Ferredoxin compare
Pf1N1B4_5904 -1.0 -2.3 FIG00955320: hypothetical protein compare
Pf1N1B4_3506 -1.0 -4.3 Cysteine synthase B (EC 2.5.1.47) compare
Pf1N1B4_2282 -1.0 -4.1 Phosphoserine phosphatase (EC 3.1.3.3) compare
Pf1N1B4_5777 -1.0 -3.2 Nitrous oxide reductase maturation protein, outer-membrane lipoprotein NosL compare
Pf1N1B4_1831 -1.0 -4.2 Tryptophan synthase beta chain (EC 4.2.1.20) compare
Pf1N1B4_3849 -1.0 -2.6 Transcriptional regulator, GntR family compare
Pf1N1B4_4678 -1.0 -1.0 1,4-alpha-glucan (glycogen) branching enzyme, GH-13-type (EC 2.4.1.18) compare
Pf1N1B4_5136 -1.0 -4.2 Carboxynorspermidine dehydrogenase compare
Pf1N1B4_558 -1.0 -7.3 Gluconate utilization system Gnt-I transcriptional repressor compare
Pf1N1B4_5720 -1.0 -1.6 hypothetical protein compare
Pf1N1B4_5610 -1.0 -2.9 Probable acyl-CoA dehydrogenase (EC 1.3.99.3) compare
Pf1N1B4_2458 -1.0 -1.9 Sarcosine oxidase gamma subunit (EC 1.5.3.1) compare
Pf1N1B4_284 -1.0 -7.1 Universal stress protein family compare
Pf1N1B4_3907 -1.0 -2.2 FIG00953287: hypothetical protein compare
Pf1N1B4_5137 -1.0 -4.1 Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) compare
Pf1N1B4_3573 -1.0 -4.6 Flagellar hook-associated protein FlgK compare
Pf1N1B4_2783 -1.0 -1.1 Transcription elongation factor GreB-related protein compare
Pf1N1B4_1632 -1.0 -2.8 FIG001341: Probable Fe(2+)-trafficking protein YggX compare
Pf1N1B4_1052 -1.0 -2.0 FKBP-type peptidyl-prolyl cis-trans isomerase SlyD (EC 5.2.1.8) compare
Pf1N1B4_5768 -1.0 -2.3 Heme d1 biosynthesis protein NirD compare
Pf1N1B4_2718 -1.0 -3.5 Hydroxymethylpyrimidine phosphate kinase ThiD (EC 2.7.4.7) compare
Pf1N1B4_2547 -1.0 -0.9 Anthranilate synthase, amidotransferase component (EC 4.1.3.27) @ Para-aminobenzoate synthase, amidotransferase component (EC 2.6.1.85) compare
Pf1N1B4_106 -1.0 -1.5 Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1) compare
Pf1N1B4_4836 -1.0 -4.1 COG2879, Hypothetical small protein yjiX compare
Pf1N1B4_977 -1.0 -2.2 Molybdenum cofactor biosynthesis protein MoaC compare
Pf1N1B4_5949 -1.0 -3.0 Phosphomannomutase (EC 5.4.2.8) compare
Pf1N1B4_777 -1.0 -5.4 Membrane protein glpM compare
Pf1N1B4_3598 -0.9 -3.7 FIG00953167: hypothetical protein compare
Pf1N1B4_4952 -0.9 -2.4 L-seryl-tRNA(Sec) selenium transferase (EC 2.9.1.1) compare
Pf1N1B4_4857 -0.9 -3.2 Chemotaxis protein methyltransferase CheR (EC 2.1.1.80) compare
Pf1N1B4_3531 -0.9 -1.6 FIG039061: hypothetical protein related to heme utilization compare
Pf1N1B4_1147 -0.9 -4.4 Fructose repressor FruR, LacI family compare
Pf1N1B4_3334 -0.9 -3.0 Metal-dependent hydrolases of the beta-lactamase superfamily I compare
Pf1N1B4_5763 -0.9 -1.9 Nitric oxide reductase activation protein NorQ compare
Pf1N1B4_1590 -0.9 -3.3 Histidine utilization repressor compare
Pf1N1B4_1613 -0.9 -2.1 tRNA (cytidine(34)-2'-O)-methyltransferase (EC 2.1.1.207) compare
Pf1N1B4_7 -0.9 -2.2 tRNA pseudouridine synthase A (EC 4.2.1.70) compare
Pf1N1B4_237 -0.9 -1.6 Molybdopterin-guanine dinucleotide biosynthesis protein MobA compare
Pf1N1B4_5923 -0.9 -1.6 PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein compare
Pf1N1B4_5620 -0.9 -1.7 Protein export cytoplasm protein SecA ATPase RNA helicase (TC 3.A.5.1.1) compare
Pf1N1B4_2857 -0.9 -1.2 Poly(A) polymerase (EC 2.7.7.19) compare
Pf1N1B4_1313 -0.9 -5.4 tRNA dihydrouridine synthase B (EC 1.-.-.-) compare
Pf1N1B4_3993 -0.9 -2.4 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) compare
Pf1N1B4_1962 -0.9 -5.1 Teichoic acid export ATP-binding protein TagH (EC 3.6.3.40) compare
Pf1N1B4_4459 -0.9 -2.2 Thermostable hemolysin delta-VPH compare
Pf1N1B4_2225 -0.9 -5.7 5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) compare
Pf1N1B4_3002 -0.9 -1.7 hypothetical protein compare
Pf1N1B4_2010 -0.9 -3.0 Pyruvate carboxyl transferase subunit A (EC 6.4.1.1) compare
Pf1N1B4_2331 -0.9 -2.0 Thiazole biosynthesis protein ThiG compare
Pf1N1B4_3636 -0.9 -1.0 FIG00953562: hypothetical protein compare
Pf1N1B4_4159 -0.9 -2.0 FIG00955149: hypothetical protein compare
Pf1N1B4_2011 -0.9 -4.0 Pyruvate carboxyl transferase subunit B (EC 6.4.1.1) compare
Pf1N1B4_4957 -0.9 -1.2 Transcriptional regulator, TetR family compare
Pf1N1B4_257 -0.9 -2.7 sensor histidine kinase/response regulator compare
Pf1N1B4_1916 -0.9 -1.2 Chaperone protein YscY (Yop proteins translocation protein Y) compare
Pf1N1B4_2850 -0.8 -3.2 Glucose-6-phosphate isomerase (EC 5.3.1.9) compare
Pf1N1B4_3627 -0.8 -1.9 Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY compare
Pf1N1B4_5269 -0.8 -1.4 hypothetical protein compare
Pf1N1B4_3472 -0.8 -3.9 Flagellar basal-body rod protein FlgB compare
Pf1N1B4_5973 -0.8 -2.5 Probable permease of ABC transporter compare
Pf1N1B4_3570 -0.8 -3.6 Flagellar L-ring protein FlgH compare
Pf1N1B4_4669 -0.8 -1.5 Heavy metal RND efflux outer membrane protein, CzcC family compare
Pf1N1B4_3696 -0.8 -6.8 FIG00955360: hypothetical protein compare
Pf1N1B4_4570 -0.8 -2.8 Probable carboxyvinyl-carboxyphosphonate phosphorylmutase (EC 2.7.8.23) compare
Pf1N1B4_3997 -0.8 -3.0 Uncharacterized protein YtfM precursor compare
Pf1N1B4_3831 -0.8 -3.4 CmpX compare
Pf1N1B4_3624 -0.8 -3.6 Flagellar biosynthesis protein FlhF compare
Pf1N1B4_3025 -0.8 -1.8 Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) compare
Pf1N1B4_3353 -0.8 -2.7 putative cytoplasmic protein compare
Pf1N1B4_5738 -0.8 -3.8 Nitrate/nitrite transporter compare
Pf1N1B4_1625 -0.8 -2.0 FIG00956267: hypothetical protein compare
Pf1N1B4_5567 -0.8 -3.8 transcriptional regulator MvaT, P16 subunit, putative compare
Pf1N1B4_5082 -0.8 -2.9 Capsular polysaccharide synthesis enzyme CpsB compare
Pf1N1B4_1691 -0.8 -1.1 hypothetical protein compare
Pf1N1B4_3715 -0.8 -2.9 Cobalamin synthase compare
Pf1N1B4_1890 -0.8 -2.8 Membrane lipoprotein lipid attachment site containing protein USSDB6D compare
Pf1N1B4_1500 -0.8 -3.0 Chromosome (plasmid) partitioning protein ParA compare
Pf1N1B4_616 -0.8 -2.4 Ornithine carbamoyltransferase (EC 2.1.3.3) compare
Pf1N1B4_4065 -0.8 -2.7 Siroheme synthase / Precorrin-2 oxidase (EC 1.3.1.76) / Sirohydrochlorin ferrochelatase (EC 4.99.1.4) / Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) compare
Pf1N1B4_4359 -0.8 -1.2 PvcA protein, related to known isonitrile synthases compare
Pf1N1B4_4372 -0.8 -2.2 Galactitol utilization operon repressor compare
Pf1N1B4_6040 -0.8 -3.3 FIG00956858: hypothetical protein compare
Pf1N1B4_5386 -0.8 -2.2 hypothetical protein compare
Pf1N1B4_236 -0.8 -2.7 Molybdenum cofactor biosynthesis protein MoaB compare
Pf1N1B4_5710 -0.8 -2.2 Transcriptional regulator, TetR family compare
Pf1N1B4_5389 -0.8 -3.6 hypothetical protein compare
Pf1N1B4_3779 -0.8 -1.6 Hydrolase, alpha/beta fold family functionally coupled to Phosphoribulokinase compare
Pf1N1B4_733 -0.8 -0.4 Methionyl-tRNA synthetase (EC 6.1.1.10) compare
Pf1N1B4_1749 -0.8 -2.1 Prevent host death protein, Phd antitoxin compare
Pf1N1B4_1695 -0.8 -1.6 Cystine ABC transporter, ATP-binding protein compare
Pf1N1B4_5984 -0.8 -3.4 FIG005548: transport protein compare
Pf1N1B4_5089 -0.8 -1.0 Exopolysaccharide production protein ExoQ compare
Pf1N1B4_3868 -0.8 -2.1 Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) compare
Pf1N1B4_115 -0.8 -1.8 Membrane protein mosC compare
Pf1N1B4_3574 -0.8 -4.4 Flagellar hook-associated protein FlgL compare
Pf1N1B4_1093 -0.7 -3.0 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) compare
Pf1N1B4_2290 -0.7 -2.0 Cd(II)/Pb(II)-responsive transcriptional regulator compare
Pf1N1B4_3630 -0.7 -3.0 Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61) compare
Pf1N1B4_5823 -0.7 -1.3 Na(+) H(+) antiporter subunit C compare
Pf1N1B4_1975 -0.7 -2.5 Transcriptional regulator, AsnC family compare
Pf1N1B4_3622 -0.7 -3.0 Flagellar biosynthesis protein FlhA compare
Pf1N1B4_2840 -0.7 -2.8 Leader peptidase (Prepilin peptidase) (EC 3.4.23.43) / N-methyltransferase (EC 2.1.1.-) compare
Pf1N1B4_3098 -0.7 -2.7 Ribonuclease HII (EC 3.1.26.4) compare
Pf1N1B4_4617 -0.7 -3.0 hypothetical protein compare
Pf1N1B4_899 -0.7 -1.6 DNA polymerase III chi subunit (EC 2.7.7.7) compare
Pf1N1B4_5242 -0.7 -1.4 hypothetical protein compare
Pf1N1B4_3599 -0.7 -2.8 Flagellar regulatory protein FleQ compare
Pf1N1B4_208 -0.7 -1.9 Two-component system response regulator QseB compare
Pf1N1B4_3972 -0.7 -2.1 ABC-type spermidine/putrescine transport system, permease component II compare
Pf1N1B4_47 -0.7 -1.1 Copper resistance protein D compare
Pf1N1B4_5495 -0.7 -3.7 Cyclic AMP receptor protein compare
Pf1N1B4_1667 -0.7 -2.7 Histone acetyltransferase HPA2 and related acetyltransferases compare
Pf1N1B4_724 -0.7 -1.9 DNA-binding response regulator ColR compare
Pf1N1B4_1636 -0.7 -0.7 FIG00954739: hypothetical protein compare
Pf1N1B4_1830 -0.7 -2.1 Tryptophan synthase alpha chain (EC 4.2.1.20) compare
Pf1N1B4_3612 -0.7 -2.7 Flagellar hook-length control protein FliK compare
Pf1N1B4_3065 -0.7 -2.6 FIG00954412: hypothetical protein compare


Specific Phenotypes

For 2 genes in this experiment

For denitrifying Sodium pyruvate in Pseudomonas fluorescens FW300-N1B4

For denitrifying Sodium pyruvate across organisms